Wall clock time and date at job start Tue Mar 31 2020 04:43:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34256 * 125.74901 * 2 1 4 4 C 1.38056 * 107.41526 * 180.02562 * 3 2 1 5 5 C 1.47424 * 126.41648 * 179.97438 * 4 3 2 6 6 O 1.21609 * 119.99832 * 0.02562 * 5 4 3 7 7 N 1.34774 * 119.99786 * 179.97438 * 5 4 3 8 8 C 1.46504 * 119.99658 * 179.97438 * 7 5 4 9 9 C 1.52997 * 109.47126 * 179.97438 * 8 7 5 10 10 H 1.09005 * 109.50925 * 60.10149 * 9 8 7 11 11 C 1.53711 * 109.48951 * 180.36200 * 9 8 7 12 12 N 1.47146 * 108.16509 * 172.39691 * 11 9 8 13 13 C 1.36937 * 120.97935 * 129.43371 * 12 11 9 14 14 H 1.08003 * 120.00119 * 333.87097 * 13 12 11 15 15 C 1.38818 * 120.00012 * 153.87103 * 13 12 11 16 16 N 1.31616 * 119.99804 * 159.44782 * 15 13 12 17 17 Si 1.86798 * 119.99907 * 339.17353 * 15 13 12 18 18 H 1.48496 * 109.46963 * 94.51933 * 17 15 13 19 19 H 1.48502 * 109.46941 * 214.52256 * 17 15 13 20 20 H 1.48502 * 109.46975 * 334.52054 * 17 15 13 21 21 C 1.47149 * 118.03987 * 309.16579 * 12 11 9 22 22 C 1.53298 * 108.38351 * 50.78081 * 21 12 11 23 23 O 1.42956 * 109.22418 * 307.70003 * 22 21 12 24 24 C 1.41292 * 107.16430 * 0.24283 * 4 3 2 25 25 N 1.30449 * 108.02751 * 359.58972 * 24 4 3 26 26 H 1.09002 * 109.47827 * 89.99930 * 1 2 3 27 27 H 1.09005 * 109.47043 * 209.99862 * 1 2 3 28 28 H 1.09003 * 109.47576 * 329.99858 * 1 2 3 29 29 H 1.07996 * 126.29991 * 0.02628 * 3 2 1 30 30 H 0.96995 * 120.00115 * 0.02562 * 7 5 4 31 31 H 1.08999 * 109.47248 * 60.00466 * 8 7 5 32 32 H 1.08995 * 109.47648 * 300.00278 * 8 7 5 33 33 H 1.09004 * 109.83038 * 52.72085 * 11 9 8 34 34 H 1.08994 * 109.74690 * 292.03139 * 11 9 8 35 35 H 0.97004 * 119.99619 * 179.97438 * 16 15 13 36 36 H 1.09003 * 109.68718 * 170.50603 * 21 12 11 37 37 H 1.09000 * 109.68352 * 291.02167 * 21 12 11 38 38 H 1.09002 * 109.50955 * 67.62852 * 22 21 12 39 39 H 1.09000 * 109.50991 * 187.72749 * 22 21 12 40 40 H 1.08005 * 125.98188 * 179.73421 * 24 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2493 1.0896 0.0000 4 6 3.5598 0.6553 -0.0006 5 6 4.7638 1.5062 -0.0013 6 8 4.6524 2.7172 -0.0010 7 7 5.9877 0.9419 -0.0013 8 6 7.1841 1.7875 -0.0026 9 6 8.4331 0.9038 -0.0017 10 1 8.4343 0.2743 -0.8916 11 6 9.6886 1.7906 0.0061 12 7 10.8621 0.9225 0.1918 13 6 11.9426 1.0093 -0.6451 14 1 11.8159 1.3713 -1.6547 15 6 13.2007 0.6321 -0.1957 16 7 14.1437 0.3249 -1.0610 17 14 13.5574 0.5678 1.6367 18 1 13.3435 -0.8148 2.1345 19 1 14.9660 0.9697 1.8811 20 1 12.6463 1.4977 2.3513 21 6 10.8430 -0.0373 1.3069 22 6 9.5335 -0.8314 1.2389 23 8 8.4340 0.0794 1.1663 24 6 3.5310 -0.7573 -0.0067 25 7 2.2826 -1.1356 -0.0006 26 1 -0.3635 0.0000 -1.0276 27 1 -0.3633 -0.8900 0.5138 28 1 -0.3634 0.8900 0.5139 29 1 1.9165 2.1170 0.0004 30 1 6.0764 -0.0240 -0.0012 31 1 7.1847 2.4175 0.8868 32 1 7.1839 2.4160 -0.8931 33 1 9.6295 2.5081 0.8245 34 1 9.7707 2.3210 -0.9426 35 1 15.0229 0.0616 -0.7470 36 1 11.6900 -0.7180 1.2201 37 1 10.8989 0.4992 2.2541 38 1 9.5388 -1.4672 0.3536 39 1 9.4362 -1.4502 2.1310 40 1 4.3918 -1.4095 -0.0127 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035278573.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:43:17 Heat of formation + Delta-G solvation = 30.565351 kcal Electronic energy + Delta-G solvation = -23267.646330 eV Core-core repulsion = 19699.538049 eV Total energy + Delta-G solvation = -3568.108280 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.148 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.59340 -39.37234 -38.50121 -35.02677 -34.40289 -33.73926 -31.71060 -31.26943 -30.47603 -28.07179 -27.26402 -25.68389 -23.17062 -23.01797 -21.86488 -21.17198 -20.44121 -19.79126 -18.15999 -16.97554 -16.32267 -16.03993 -15.95922 -15.83080 -15.49666 -14.84928 -14.70107 -14.24305 -14.22149 -14.05036 -13.60028 -13.41592 -13.16398 -13.11846 -12.96608 -12.47046 -12.36857 -11.88065 -11.71387 -11.36300 -11.21922 -10.85806 -10.43743 -10.28934 -9.91901 -9.90539 -9.79517 -9.55661 -9.42977 -9.11244 -8.78955 -8.61032 -7.06213 -6.01144 -3.38053 1.29972 1.95995 2.02232 3.26636 3.30176 3.45011 3.45305 3.48199 4.03640 4.14480 4.46195 4.46766 4.65016 4.68218 4.76194 4.93313 4.95387 5.17474 5.22005 5.31004 5.37887 5.48767 5.59984 5.77156 5.81997 5.88345 6.02384 6.10915 6.14688 6.19233 6.42955 6.47364 6.49455 6.54182 6.69690 7.22269 7.58763 7.63144 7.82416 8.24289 8.33304 8.82438 9.63193 9.99021 11.14349 Molecular weight = 294.15amu Principal moments of inertia in cm(-1) A = 0.039763 B = 0.002891 C = 0.002815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 704.003733 B = 9683.139419 C = 9942.572848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.097 3.903 2 N -0.367 5.367 3 C 0.126 3.874 4 C -0.290 4.290 5 C 0.593 3.407 6 O -0.556 6.556 7 N -0.716 5.716 8 C 0.133 3.867 9 C 0.062 3.938 10 H 0.065 0.935 11 C 0.125 3.875 12 N -0.607 5.607 13 C -0.263 4.263 14 H 0.089 0.911 15 C 0.024 3.976 16 N -0.906 5.906 17 Si 0.883 3.117 18 H -0.289 1.289 19 H -0.302 1.302 20 H -0.269 1.269 21 C 0.090 3.910 22 C 0.050 3.950 23 O -0.385 6.385 24 C 0.084 3.916 25 N -0.300 5.300 26 H 0.079 0.921 27 H 0.093 0.907 28 H 0.091 0.909 29 H 0.189 0.811 30 H 0.402 0.598 31 H 0.075 0.925 32 H 0.083 0.917 33 H 0.035 0.965 34 H 0.074 0.926 35 H 0.264 0.736 36 H 0.080 0.920 37 H 0.035 0.965 38 H 0.052 0.948 39 H 0.086 0.914 40 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.283 -1.949 2.807 25.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 N -0.146 5.146 3 C -0.026 4.026 4 C -0.305 4.305 5 C 0.380 3.620 6 O -0.435 6.435 7 N -0.366 5.366 8 C 0.009 3.991 9 C 0.002 3.998 10 H 0.083 0.917 11 C -0.002 4.002 12 N -0.332 5.332 13 C -0.390 4.390 14 H 0.106 0.894 15 C -0.176 4.176 16 N -0.549 5.549 17 Si 0.713 3.287 18 H -0.216 1.216 19 H -0.230 1.230 20 H -0.194 1.194 21 C -0.036 4.036 22 C -0.028 4.028 23 O -0.305 6.305 24 C -0.104 4.104 25 N -0.119 5.119 26 H 0.098 0.902 27 H 0.111 0.889 28 H 0.110 0.890 29 H 0.205 0.795 30 H 0.237 0.763 31 H 0.093 0.907 32 H 0.101 0.899 33 H 0.053 0.947 34 H 0.093 0.907 35 H 0.073 0.927 36 H 0.098 0.902 37 H 0.053 0.947 38 H 0.070 0.930 39 H 0.104 0.896 40 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges -26.254 -2.106 2.898 26.498 hybrid contribution 1.242 0.064 0.862 1.513 sum -25.012 -2.042 3.760 25.375 Atomic orbital electron populations 1.21987 0.73504 1.04986 1.03908 1.48426 1.07242 1.03915 1.55022 1.22976 0.90125 0.93711 0.95750 1.20312 0.93569 0.93563 1.23023 1.17196 0.82221 0.86839 0.75717 1.90766 1.86966 1.14166 1.51646 1.45657 1.05132 1.10700 1.75119 1.21398 0.81802 0.92838 1.03062 1.22950 0.94885 0.93150 0.88785 0.91687 1.21561 0.85880 0.92008 1.00738 1.44365 1.16578 1.38786 1.33493 1.18918 0.84628 1.42010 0.93490 0.89359 1.25243 0.95502 0.99442 0.97382 1.69828 1.04439 1.47117 1.33487 0.86964 0.76634 0.77636 0.87463 1.21623 1.22987 1.19414 1.22012 0.96990 0.93033 0.91562 1.23056 0.87341 0.91295 1.01135 1.87806 1.46982 1.52621 1.43045 1.24129 0.95341 0.94020 0.96906 1.77193 1.01974 1.07760 1.25021 0.90205 0.88863 0.89011 0.79454 0.76315 0.90659 0.89905 0.94673 0.90726 0.92655 0.90201 0.94701 0.92983 0.89558 0.79192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.38 11.44 59.85 0.68 1.07 16 2 N -0.37 -3.18 3.98 -67.59 -0.27 -3.45 16 3 C 0.13 1.18 11.30 -16.56 -0.19 0.99 16 4 C -0.29 -3.29 6.13 -105.06 -0.64 -3.94 16 5 C 0.59 8.14 7.81 -12.52 -0.10 8.04 16 6 O -0.56 -9.38 16.90 5.27 0.09 -9.29 16 7 N -0.72 -9.12 5.44 -61.38 -0.33 -9.45 16 8 C 0.13 1.88 5.37 -4.04 -0.02 1.85 16 9 C 0.06 0.99 2.88 -26.36 -0.08 0.92 16 10 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 11 C 0.12 2.40 6.05 -3.32 -0.02 2.38 16 12 N -0.61 -14.23 2.83 -171.57 -0.49 -14.71 16 13 C -0.26 -7.21 10.09 -15.06 -0.15 -7.36 16 14 H 0.09 2.57 8.06 -52.48 -0.42 2.15 16 15 C 0.02 0.67 5.24 -17.43 -0.09 0.58 16 16 N -0.91 -27.39 13.97 55.49 0.78 -26.62 16 17 Si 0.88 22.11 24.32 -169.99 -4.13 17.97 16 18 H -0.29 -6.90 6.69 56.52 0.38 -6.53 16 19 H -0.30 -7.71 7.11 56.52 0.40 -7.31 16 20 H -0.27 -6.69 6.42 56.52 0.36 -6.32 16 21 C 0.09 1.92 4.38 -3.53 -0.02 1.90 16 22 C 0.05 0.86 6.98 37.31 0.26 1.12 16 23 O -0.39 -6.49 10.13 -35.23 -0.36 -6.85 16 24 C 0.08 0.86 11.50 -16.98 -0.20 0.66 16 25 N -0.30 -3.25 12.50 30.86 0.39 -2.87 16 26 H 0.08 0.22 8.14 -51.93 -0.42 -0.20 16 27 H 0.09 0.32 8.14 -51.93 -0.42 -0.10 16 28 H 0.09 0.15 8.14 -51.93 -0.42 -0.28 16 29 H 0.19 1.32 8.06 -52.49 -0.42 0.89 16 30 H 0.40 4.39 7.30 -40.82 -0.30 4.10 16 31 H 0.08 1.14 8.14 -51.93 -0.42 0.71 16 32 H 0.08 1.13 8.14 -51.93 -0.42 0.70 16 33 H 0.04 0.68 8.14 -51.93 -0.42 0.25 16 34 H 0.07 1.38 7.96 -51.93 -0.41 0.97 16 35 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 36 H 0.08 1.84 4.68 -51.93 -0.24 1.59 16 37 H 0.04 0.76 6.81 -51.93 -0.35 0.41 16 38 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 39 H 0.09 1.26 8.14 -51.93 -0.42 0.84 16 40 H 0.19 1.43 7.50 -52.48 -0.39 1.04 16 LS Contribution 331.43 15.07 4.99 4.99 Total: -1.00 -35.39 331.43 -5.44 -40.83 By element: Atomic # 1 Polarization: 6.78 SS G_CDS: -5.55 Total: 1.23 kcal Atomic # 6 Polarization: 8.77 SS G_CDS: -0.56 Total: 8.22 kcal Atomic # 7 Polarization: -57.18 SS G_CDS: 0.07 Total: -57.10 kcal Atomic # 8 Polarization: -15.87 SS G_CDS: -0.27 Total: -16.14 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -4.13 Total: 17.97 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -35.39 -5.44 -40.83 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035278573.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.394 kcal (2) G-P(sol) polarization free energy of solvation -35.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.829 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds