Wall clock time and date at job start Tue Mar 31 2020 04:43:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34256 * 125.74901 * 2 1 4 4 C 1.38056 * 107.41526 * 180.02562 * 3 2 1 5 5 C 1.47424 * 126.41648 * 179.97438 * 4 3 2 6 6 O 1.21609 * 119.99832 * 0.02562 * 5 4 3 7 7 N 1.34774 * 119.99786 * 179.97438 * 5 4 3 8 8 C 1.46504 * 119.99658 * 179.97438 * 7 5 4 9 9 C 1.52997 * 109.47126 * 179.97438 * 8 7 5 10 10 H 1.09005 * 109.50925 * 60.10149 * 9 8 7 11 11 C 1.53711 * 109.48951 * 180.36200 * 9 8 7 12 12 N 1.47146 * 108.16509 * 172.39691 * 11 9 8 13 13 C 1.36937 * 120.97935 * 129.43371 * 12 11 9 14 14 H 1.08003 * 120.00119 * 333.87097 * 13 12 11 15 15 C 1.38818 * 120.00012 * 153.87103 * 13 12 11 16 16 N 1.31616 * 119.99804 * 159.44782 * 15 13 12 17 17 Si 1.86798 * 119.99907 * 339.17353 * 15 13 12 18 18 H 1.48496 * 109.46963 * 94.51933 * 17 15 13 19 19 H 1.48502 * 109.46941 * 214.52256 * 17 15 13 20 20 H 1.48502 * 109.46975 * 334.52054 * 17 15 13 21 21 C 1.47149 * 118.03987 * 309.16579 * 12 11 9 22 22 C 1.53298 * 108.38351 * 50.78081 * 21 12 11 23 23 O 1.42956 * 109.22418 * 307.70003 * 22 21 12 24 24 C 1.41292 * 107.16430 * 0.24283 * 4 3 2 25 25 N 1.30449 * 108.02751 * 359.58972 * 24 4 3 26 26 H 1.09002 * 109.47827 * 89.99930 * 1 2 3 27 27 H 1.09005 * 109.47043 * 209.99862 * 1 2 3 28 28 H 1.09003 * 109.47576 * 329.99858 * 1 2 3 29 29 H 1.07996 * 126.29991 * 0.02628 * 3 2 1 30 30 H 0.96995 * 120.00115 * 0.02562 * 7 5 4 31 31 H 1.08999 * 109.47248 * 60.00466 * 8 7 5 32 32 H 1.08995 * 109.47648 * 300.00278 * 8 7 5 33 33 H 1.09004 * 109.83038 * 52.72085 * 11 9 8 34 34 H 1.08994 * 109.74690 * 292.03139 * 11 9 8 35 35 H 0.97004 * 119.99619 * 179.97438 * 16 15 13 36 36 H 1.09003 * 109.68718 * 170.50603 * 21 12 11 37 37 H 1.09000 * 109.68352 * 291.02167 * 21 12 11 38 38 H 1.09002 * 109.50955 * 67.62852 * 22 21 12 39 39 H 1.09000 * 109.50991 * 187.72749 * 22 21 12 40 40 H 1.08005 * 125.98188 * 179.73421 * 24 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2493 1.0896 0.0000 4 6 3.5598 0.6553 -0.0006 5 6 4.7638 1.5062 -0.0013 6 8 4.6524 2.7172 -0.0010 7 7 5.9877 0.9419 -0.0013 8 6 7.1841 1.7875 -0.0026 9 6 8.4331 0.9038 -0.0017 10 1 8.4343 0.2743 -0.8916 11 6 9.6886 1.7906 0.0061 12 7 10.8621 0.9225 0.1918 13 6 11.9426 1.0093 -0.6451 14 1 11.8159 1.3713 -1.6547 15 6 13.2007 0.6321 -0.1957 16 7 14.1437 0.3249 -1.0610 17 14 13.5574 0.5678 1.6367 18 1 13.3435 -0.8148 2.1345 19 1 14.9660 0.9697 1.8811 20 1 12.6463 1.4977 2.3513 21 6 10.8430 -0.0373 1.3069 22 6 9.5335 -0.8314 1.2389 23 8 8.4340 0.0794 1.1663 24 6 3.5310 -0.7573 -0.0067 25 7 2.2826 -1.1356 -0.0006 26 1 -0.3635 0.0000 -1.0276 27 1 -0.3633 -0.8900 0.5138 28 1 -0.3634 0.8900 0.5139 29 1 1.9165 2.1170 0.0004 30 1 6.0764 -0.0240 -0.0012 31 1 7.1847 2.4175 0.8868 32 1 7.1839 2.4160 -0.8931 33 1 9.6295 2.5081 0.8245 34 1 9.7707 2.3210 -0.9426 35 1 15.0229 0.0616 -0.7470 36 1 11.6900 -0.7180 1.2201 37 1 10.8989 0.4992 2.2541 38 1 9.5388 -1.4672 0.3536 39 1 9.4362 -1.4502 2.1310 40 1 4.3918 -1.4095 -0.0127 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001035278573.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:43:16 Heat of formation + Delta-G solvation = 2.730749 kcal Electronic energy + Delta-G solvation = -23268.853329 eV Core-core repulsion = 19699.538049 eV Total energy + Delta-G solvation = -3569.315279 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.148 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.32274 -40.60910 -39.78897 -36.62527 -35.72686 -34.36676 -33.65508 -32.65572 -31.31355 -29.42781 -28.25889 -27.01243 -24.82393 -24.17614 -23.06769 -21.90457 -21.81842 -20.91542 -19.08999 -18.85236 -17.69671 -17.27801 -17.05435 -16.81086 -16.59733 -15.92204 -15.86533 -15.64152 -15.57070 -15.35880 -15.28100 -14.58147 -14.16806 -13.94888 -13.86770 -13.58218 -13.49159 -13.42558 -13.31964 -12.93063 -12.38304 -12.30684 -12.09622 -12.06791 -11.55435 -11.37317 -11.14028 -10.94665 -10.57801 -10.50646 -10.13863 -9.62166 -8.97850 -8.19369 -5.52485 0.55201 1.16206 1.27482 1.41308 1.46361 1.49486 2.27736 2.38401 2.49407 2.72859 3.01632 3.22582 3.54268 3.83037 3.94411 4.00602 4.13589 4.18241 4.20177 4.29403 4.36679 4.43894 4.50605 4.58763 4.61256 4.70206 4.71662 4.74768 4.86130 4.90258 4.96594 5.16290 5.38231 5.47829 5.77830 5.88532 6.08308 6.21417 6.49195 6.66864 6.81914 7.31675 7.54220 7.94512 8.99878 Molecular weight = 294.15amu Principal moments of inertia in cm(-1) A = 0.039763 B = 0.002891 C = 0.002815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 704.003733 B = 9683.139419 C = 9942.572848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.363 5.363 3 C 0.134 3.866 4 C -0.317 4.317 5 C 0.594 3.406 6 O -0.594 6.594 7 N -0.709 5.709 8 C 0.142 3.858 9 C 0.077 3.923 10 H 0.069 0.931 11 C 0.118 3.882 12 N -0.623 5.623 13 C -0.251 4.251 14 H 0.059 0.941 15 C -0.033 4.033 16 N -0.954 5.954 17 Si 0.945 3.055 18 H -0.269 1.269 19 H -0.311 1.311 20 H -0.266 1.266 21 C 0.081 3.919 22 C 0.059 3.941 23 O -0.382 6.382 24 C 0.085 3.915 25 N -0.326 5.326 26 H 0.094 0.906 27 H 0.097 0.903 28 H 0.119 0.881 29 H 0.210 0.790 30 H 0.412 0.588 31 H 0.067 0.933 32 H 0.088 0.912 33 H 0.038 0.962 34 H 0.074 0.926 35 H 0.263 0.737 36 H 0.063 0.937 37 H 0.035 0.965 38 H 0.055 0.945 39 H 0.122 0.878 40 H 0.210 0.790 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.844 -2.657 4.180 28.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.141 5.141 3 C -0.020 4.020 4 C -0.332 4.332 5 C 0.384 3.616 6 O -0.476 6.476 7 N -0.360 5.360 8 C 0.018 3.982 9 C 0.017 3.983 10 H 0.087 0.913 11 C -0.007 4.007 12 N -0.348 5.348 13 C -0.380 4.380 14 H 0.076 0.924 15 C -0.229 4.229 16 N -0.599 5.599 17 Si 0.774 3.226 18 H -0.195 1.195 19 H -0.240 1.240 20 H -0.190 1.190 21 C -0.044 4.044 22 C -0.019 4.019 23 O -0.301 6.301 24 C -0.102 4.102 25 N -0.147 5.147 26 H 0.112 0.888 27 H 0.116 0.884 28 H 0.137 0.863 29 H 0.226 0.774 30 H 0.249 0.751 31 H 0.085 0.915 32 H 0.106 0.894 33 H 0.056 0.944 34 H 0.092 0.908 35 H 0.072 0.928 36 H 0.081 0.919 37 H 0.053 0.947 38 H 0.074 0.926 39 H 0.139 0.861 40 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges -28.886 -2.859 4.294 29.343 hybrid contribution 1.899 0.325 0.368 1.962 sum -26.986 -2.534 4.662 27.503 Atomic orbital electron populations 1.22399 0.70926 1.06628 1.05368 1.48800 1.08659 1.03115 1.53484 1.23340 0.89757 0.94769 0.94101 1.20231 0.93392 0.93914 1.25686 1.17486 0.82845 0.86559 0.74751 1.90741 1.87472 1.15772 1.53606 1.45539 1.04536 1.11090 1.74804 1.21194 0.81569 0.92461 1.02985 1.22751 0.94009 0.92637 0.88861 0.91272 1.21742 0.85817 0.92317 1.00861 1.44493 1.16510 1.40356 1.33485 1.18870 0.86045 1.40101 0.92983 0.92371 1.25854 0.95476 1.00213 1.01313 1.69951 1.04962 1.49591 1.35430 0.85945 0.75616 0.78565 0.82448 1.19548 1.24009 1.19031 1.22132 0.98946 0.92783 0.90555 1.23020 0.84992 0.90798 1.03087 1.87831 1.46489 1.52526 1.43209 1.24435 0.95883 0.93795 0.96084 1.77151 1.02442 1.09108 1.25963 0.88803 0.88385 0.86297 0.77380 0.75124 0.91467 0.89411 0.94355 0.90762 0.92822 0.91852 0.94687 0.92621 0.86055 0.77334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.44 11.44 127.77 1.46 1.90 16 2 N -0.36 -5.46 3.98 -367.77 -1.46 -6.92 16 3 C 0.13 2.23 11.30 84.28 0.95 3.18 16 4 C -0.32 -6.71 6.13 -20.15 -0.12 -6.83 16 5 C 0.59 15.57 7.81 86.66 0.68 16.25 16 6 O -0.59 -19.56 16.90 -4.06 -0.07 -19.63 16 7 N -0.71 -16.84 5.44 -466.38 -2.54 -19.38 16 8 C 0.14 3.80 5.37 86.38 0.46 4.27 16 9 C 0.08 2.32 2.88 30.83 0.09 2.41 16 10 H 0.07 2.08 8.14 -2.38 -0.02 2.06 16 11 C 0.12 4.45 6.05 86.50 0.52 4.97 16 12 N -0.62 -28.77 2.83 -696.74 -1.97 -30.74 16 13 C -0.25 -13.98 10.09 84.03 0.85 -13.13 16 14 H 0.06 3.52 8.06 -2.91 -0.02 3.49 16 15 C -0.03 -1.93 5.24 84.86 0.45 -1.48 16 16 N -0.95 -59.10 13.97 21.65 0.30 -58.80 16 17 Si 0.95 45.93 24.32 68.60 1.67 47.60 16 18 H -0.27 -12.10 6.69 99.48 0.67 -11.44 16 19 H -0.31 -15.47 7.11 99.48 0.71 -14.76 16 20 H -0.27 -12.58 6.42 99.48 0.64 -11.94 16 21 C 0.08 3.30 4.38 86.36 0.38 3.68 16 22 C 0.06 1.85 6.98 72.08 0.50 2.35 16 23 O -0.38 -11.75 10.13 -148.98 -1.51 -13.25 16 24 C 0.09 1.59 11.50 85.65 0.99 2.58 16 25 N -0.33 -6.49 12.50 -56.27 -0.70 -7.19 16 26 H 0.09 0.26 8.14 -2.39 -0.02 0.24 16 27 H 0.10 0.44 8.14 -2.38 -0.02 0.42 16 28 H 0.12 -0.02 8.14 -2.39 -0.02 -0.04 16 29 H 0.21 2.43 8.06 -2.91 -0.02 2.40 16 30 H 0.41 8.08 7.30 -92.71 -0.68 7.40 16 31 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 32 H 0.09 2.28 8.14 -2.39 -0.02 2.26 16 33 H 0.04 1.43 8.14 -2.38 -0.02 1.41 16 34 H 0.07 2.75 7.96 -2.39 -0.02 2.73 16 35 H 0.26 15.47 8.31 -92.71 -0.77 14.70 16 36 H 0.06 2.80 4.68 -2.39 -0.01 2.79 16 37 H 0.04 1.44 6.81 -2.39 -0.02 1.43 16 38 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 39 H 0.12 3.01 8.14 -2.39 -0.02 2.99 16 40 H 0.21 2.71 7.50 -2.91 -0.02 2.68 16 Total: -1.00 -76.89 331.43 1.19 -75.70 By element: Atomic # 1 Polarization: 12.20 SS G_CDS: 0.27 Total: 12.47 kcal Atomic # 6 Polarization: 12.94 SS G_CDS: 7.20 Total: 20.14 kcal Atomic # 7 Polarization: -116.66 SS G_CDS: -6.37 Total: -123.03 kcal Atomic # 8 Polarization: -31.30 SS G_CDS: -1.58 Total: -32.88 kcal Atomic # 14 Polarization: 45.93 SS G_CDS: 1.67 Total: 47.60 kcal Total: -76.89 1.19 -75.70 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035278573.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.432 kcal (2) G-P(sol) polarization free energy of solvation -76.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.701 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds