Wall clock time and date at job start Tue Mar 31 2020 04:42:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35349 * 117.00182 * 2 1 4 4 C 1.38994 * 126.40481 * 93.39921 * 3 2 1 5 5 C 1.46922 * 126.49896 * 0.02562 * 4 3 2 6 6 O 1.21672 * 119.99903 * 0.02562 * 5 4 3 7 7 N 1.34772 * 120.00488 * 180.02562 * 5 4 3 8 8 C 1.46498 * 120.00218 * 180.02562 * 7 5 4 9 9 C 1.53004 * 109.46918 * 179.97438 * 8 7 5 10 10 H 1.08997 * 112.96781 * 306.67467 * 9 8 7 11 11 C 1.53950 * 113.76544 * 174.99567 * 9 8 7 12 12 C 1.53948 * 86.29075 * 222.09258 * 11 9 8 13 13 N 1.47576 * 86.11542 * 23.60761 * 12 11 9 14 14 C 1.36939 * 134.49140 * 155.35690 * 13 12 11 15 15 H 1.08007 * 120.00293 * 176.54499 * 14 13 12 16 16 C 1.38812 * 120.00023 * 356.54296 * 14 13 12 17 17 N 1.31622 * 119.99792 * 7.30132 * 16 14 13 18 18 Si 1.86807 * 120.00051 * 187.29807 * 16 14 13 19 19 H 1.48499 * 109.46820 * 94.97942 * 18 16 14 20 20 H 1.48490 * 109.46901 * 214.97814 * 18 16 14 21 21 H 1.48498 * 109.46886 * 334.98136 * 18 16 14 22 22 C 1.41464 * 107.00654 * 180.02562 * 4 3 2 23 23 N 1.30315 * 108.13722 * 0.25878 * 22 4 3 24 24 N 1.34655 * 126.40585 * 273.41811 * 3 2 1 25 25 C 1.46496 * 125.74424 * 0.02562 * 24 3 2 26 26 H 1.09006 * 109.47284 * 64.93227 * 1 2 3 27 27 H 1.08996 * 109.47808 * 184.93019 * 1 2 3 28 28 H 1.09000 * 109.47480 * 304.93431 * 1 2 3 29 29 H 0.97000 * 119.99765 * 359.97438 * 7 5 4 30 30 H 1.08999 * 109.46752 * 299.99682 * 8 7 5 31 31 H 1.08993 * 109.47354 * 59.99665 * 8 7 5 32 32 H 1.09003 * 113.74504 * 336.43856 * 11 9 8 33 33 H 1.09006 * 113.73819 * 107.64169 * 11 9 8 34 34 H 1.09000 * 113.76776 * 137.90945 * 12 11 9 35 35 H 1.09001 * 113.77070 * 269.19827 * 12 11 9 36 36 H 0.97007 * 119.99287 * 179.97438 * 17 16 14 37 37 H 1.07997 * 125.93107 * 179.97438 * 22 4 3 38 38 H 1.09003 * 109.47199 * 94.56850 * 25 24 3 39 39 H 1.08996 * 109.47635 * 214.57306 * 25 24 3 40 40 H 1.09006 * 109.47086 * 334.57497 * 25 24 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0435 1.2060 0.0000 4 6 2.4771 1.9108 1.1167 5 6 2.3556 1.4879 2.5185 6 8 1.8324 0.4235 2.7897 7 7 2.8238 2.2790 3.5041 8 6 2.7032 1.8571 4.9018 9 6 3.3090 2.9276 5.8118 10 1 4.3297 3.1922 5.5360 11 6 3.1262 2.6413 7.3133 12 6 2.7985 4.1386 7.4568 13 7 2.4281 4.0916 6.0291 14 6 1.5997 4.8310 5.2277 15 1 1.5421 4.6203 4.1699 16 6 0.8339 5.8514 5.7747 17 7 1.0081 6.2039 7.0308 18 14 -0.4437 6.7243 4.7281 19 1 -1.7715 6.0940 4.9401 20 1 -0.5077 8.1560 5.1169 21 1 -0.0676 6.6165 3.2956 22 6 3.0575 3.1126 0.6477 23 7 2.9704 3.1248 -0.6524 24 7 2.3487 1.9473 -1.0818 25 6 2.0703 1.5852 -2.4737 26 1 -0.3634 0.4354 -0.9309 27 1 -0.3634 -1.0238 0.0883 28 1 -0.3634 0.5885 0.8425 29 1 3.2413 3.1275 3.2879 30 1 1.6507 1.7212 5.1507 31 1 3.2346 0.9162 5.0445 32 1 2.2851 1.9847 7.5358 33 1 4.0447 2.3411 7.8178 34 1 1.9594 4.3429 8.1219 35 1 3.6687 4.7607 7.6664 36 1 0.4732 6.9173 7.4129 37 1 3.4928 3.8877 1.2610 38 1 1.1244 2.0301 -2.7827 39 1 2.8718 1.9555 -3.1129 40 1 2.0074 0.5005 -2.5614 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001038969605.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:42:18 Heat of formation + Delta-G solvation = 69.647242 kcal Electronic energy + Delta-G solvation = -23894.937717 eV Core-core repulsion = 20328.524154 eV Total energy + Delta-G solvation = -3566.413562 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.148 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.59410 -38.92013 -38.22296 -37.71934 -33.94477 -33.44105 -32.14107 -30.10244 -28.40230 -27.84210 -27.01958 -26.66576 -23.33259 -22.97029 -21.86045 -20.98209 -20.02392 -19.12372 -18.31068 -16.97422 -16.58680 -16.30439 -15.96417 -15.18246 -15.13703 -14.84169 -14.68521 -14.35706 -13.98085 -13.76642 -13.62101 -13.14990 -13.02414 -12.89532 -12.69165 -12.08490 -11.79418 -11.41222 -11.36170 -11.10353 -10.99434 -10.71633 -10.51688 -10.37240 -9.95964 -9.71843 -9.59210 -9.57045 -9.29803 -8.76428 -8.71614 -8.37066 -6.87200 -5.74760 -3.05335 1.17567 1.99856 2.15649 3.35946 3.39828 3.45199 3.46882 3.68483 3.79676 4.29924 4.46342 4.82340 4.83399 4.90349 5.06990 5.09898 5.12944 5.16349 5.27000 5.43093 5.45302 5.61489 5.69367 5.82814 5.94592 5.97112 6.17409 6.29098 6.39465 6.45061 6.66419 6.78180 7.00430 7.22278 7.27805 7.38552 7.46286 7.61617 8.01197 8.04653 8.72726 9.07129 9.74186 10.62876 11.42518 Molecular weight = 294.15amu Principal moments of inertia in cm(-1) A = 0.015747 B = 0.004631 C = 0.004035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1777.648700 B = 6045.406097 C = 6938.395720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 O -0.297 6.297 3 C 0.315 3.685 4 C -0.288 4.288 5 C 0.590 3.410 6 O -0.551 6.551 7 N -0.710 5.710 8 C 0.127 3.873 9 C 0.126 3.874 10 H 0.050 0.950 11 C -0.156 4.156 12 C 0.158 3.842 13 N -0.602 5.602 14 C -0.217 4.217 15 H 0.079 0.921 16 C -0.006 4.006 17 N -0.919 5.919 18 Si 0.904 3.096 19 H -0.290 1.290 20 H -0.292 1.292 21 H -0.281 1.281 22 C 0.095 3.905 23 N -0.280 5.280 24 N -0.374 5.374 25 C 0.095 3.905 26 H 0.045 0.955 27 H 0.106 0.894 28 H 0.062 0.938 29 H 0.400 0.600 30 H 0.072 0.928 31 H 0.060 0.940 32 H 0.076 0.924 33 H 0.053 0.947 34 H 0.072 0.928 35 H 0.026 0.974 36 H 0.252 0.748 37 H 0.197 0.803 38 H 0.077 0.923 39 H 0.094 0.906 40 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.037 -10.119 -14.477 17.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.206 6.206 3 C 0.142 3.858 4 C -0.304 4.304 5 C 0.377 3.623 6 O -0.430 6.430 7 N -0.359 5.359 8 C 0.003 3.997 9 C 0.018 3.982 10 H 0.067 0.933 11 C -0.194 4.194 12 C 0.033 3.967 13 N -0.328 5.328 14 C -0.345 4.345 15 H 0.097 0.903 16 C -0.203 4.203 17 N -0.566 5.566 18 Si 0.735 3.265 19 H -0.217 1.217 20 H -0.218 1.218 21 H -0.207 1.207 22 C -0.092 4.092 23 N -0.103 5.103 24 N -0.163 5.163 25 C -0.046 4.046 26 H 0.063 0.937 27 H 0.124 0.876 28 H 0.081 0.919 29 H 0.234 0.766 30 H 0.090 0.910 31 H 0.078 0.922 32 H 0.095 0.905 33 H 0.072 0.928 34 H 0.090 0.910 35 H 0.044 0.956 36 H 0.062 0.938 37 H 0.214 0.786 38 H 0.096 0.904 39 H 0.112 0.888 40 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 2.691 -10.262 -15.501 18.783 hybrid contribution -0.831 0.820 -0.113 1.173 sum 1.860 -9.442 -15.614 18.341 Atomic orbital electron populations 1.23125 0.76773 1.04542 1.01070 1.85994 1.21322 1.20364 1.92895 1.19291 0.95355 0.84812 0.86374 1.20176 1.17897 0.98653 0.93635 1.16940 0.78192 0.83827 0.83338 1.90764 1.45028 1.23115 1.84101 1.45698 1.60956 1.22790 1.06499 1.21722 1.01887 0.97070 0.79066 1.22513 0.93862 0.88276 0.93513 0.93267 1.23757 1.00206 1.00275 0.95207 1.22204 0.97569 0.89324 0.87590 1.46119 1.47187 1.32692 1.06851 1.18959 1.14350 1.10435 0.90712 0.90306 1.24736 1.00101 0.99030 0.96399 1.69839 1.42220 1.31877 1.12679 0.86217 0.82155 0.78789 0.79319 1.21721 1.21830 1.20665 1.24019 0.96764 0.96592 0.91825 1.77222 1.19189 1.00371 1.13530 1.48932 1.46263 1.14491 1.06659 1.21951 1.03054 1.02028 0.77590 0.93681 0.87619 0.91946 0.76567 0.91002 0.92191 0.90525 0.92811 0.91012 0.95589 0.93765 0.78596 0.90436 0.88754 0.89008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.42 11.13 101.05 1.12 1.55 16 2 O -0.30 -4.15 9.74 -24.99 -0.24 -4.40 16 3 C 0.31 4.63 6.98 -16.03 -0.11 4.51 16 4 C -0.29 -4.61 6.15 -104.87 -0.64 -5.26 16 5 C 0.59 10.78 7.80 -12.75 -0.10 10.68 16 6 O -0.55 -11.55 16.38 -2.04 -0.03 -11.58 16 7 N -0.71 -12.38 5.55 -61.54 -0.34 -12.72 16 8 C 0.13 2.33 5.54 -4.04 -0.02 2.31 16 9 C 0.13 2.41 4.33 -66.86 -0.29 2.12 16 10 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 11 C -0.16 -2.83 7.86 -25.80 -0.20 -3.03 16 12 C 0.16 3.61 7.53 -2.98 -0.02 3.59 16 13 N -0.60 -14.55 3.57 -170.76 -0.61 -15.16 16 14 C -0.22 -5.79 10.50 -15.06 -0.16 -5.94 16 15 H 0.08 2.02 7.84 -52.48 -0.41 1.61 16 16 C -0.01 -0.17 5.50 -17.43 -0.10 -0.27 16 17 N -0.92 -26.90 11.42 55.49 0.63 -26.27 16 18 Si 0.90 22.11 29.56 -169.99 -5.02 17.09 16 19 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 20 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 21 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 22 C 0.09 1.33 11.50 -16.97 -0.20 1.14 16 23 N -0.28 -3.94 12.48 30.88 0.39 -3.56 16 24 N -0.37 -4.73 3.99 -67.67 -0.27 -5.00 16 25 C 0.09 0.72 11.41 59.84 0.68 1.40 16 26 H 0.04 0.37 8.14 -51.93 -0.42 -0.06 16 27 H 0.11 0.89 8.14 -51.93 -0.42 0.46 16 28 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.40 6.46 7.42 -40.82 -0.30 6.16 16 30 H 0.07 1.50 8.14 -51.93 -0.42 1.08 16 31 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 32 H 0.08 1.38 8.10 -51.93 -0.42 0.96 16 33 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 34 H 0.07 1.83 7.18 -51.93 -0.37 1.45 16 35 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 37 H 0.20 2.25 7.50 -52.49 -0.39 1.86 16 38 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.09 0.56 8.02 -51.93 -0.42 0.14 16 LS Contribution 346.01 15.07 5.21 5.21 Total: -1.00 -34.65 346.01 -6.00 -40.66 By element: Atomic # 1 Polarization: 8.61 SS G_CDS: -5.68 Total: 2.93 kcal Atomic # 6 Polarization: 12.84 SS G_CDS: -0.04 Total: 12.80 kcal Atomic # 7 Polarization: -62.51 SS G_CDS: -0.20 Total: -62.71 kcal Atomic # 8 Polarization: -15.70 SS G_CDS: -0.28 Total: -15.98 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.09 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -34.65 -6.00 -40.66 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038969605.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.305 kcal (2) G-P(sol) polarization free energy of solvation -34.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.658 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds