Wall clock time and date at job start Tue Mar 31 2020 04:42:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35349 * 117.00182 * 2 1 4 4 C 1.38994 * 126.40481 * 93.39921 * 3 2 1 5 5 C 1.46922 * 126.49896 * 0.02562 * 4 3 2 6 6 O 1.21672 * 119.99903 * 0.02562 * 5 4 3 7 7 N 1.34772 * 120.00488 * 180.02562 * 5 4 3 8 8 C 1.46498 * 120.00218 * 180.02562 * 7 5 4 9 9 C 1.53004 * 109.46918 * 179.97438 * 8 7 5 10 10 H 1.08997 * 112.96781 * 306.67467 * 9 8 7 11 11 C 1.53950 * 113.76544 * 174.99567 * 9 8 7 12 12 C 1.53948 * 86.29075 * 222.09258 * 11 9 8 13 13 N 1.47576 * 86.11542 * 23.60761 * 12 11 9 14 14 C 1.36939 * 134.49140 * 155.35690 * 13 12 11 15 15 H 1.08007 * 120.00293 * 176.54499 * 14 13 12 16 16 C 1.38812 * 120.00023 * 356.54296 * 14 13 12 17 17 N 1.31622 * 119.99792 * 7.30132 * 16 14 13 18 18 Si 1.86807 * 120.00051 * 187.29807 * 16 14 13 19 19 H 1.48499 * 109.46820 * 94.97942 * 18 16 14 20 20 H 1.48490 * 109.46901 * 214.97814 * 18 16 14 21 21 H 1.48498 * 109.46886 * 334.98136 * 18 16 14 22 22 C 1.41464 * 107.00654 * 180.02562 * 4 3 2 23 23 N 1.30315 * 108.13722 * 0.25878 * 22 4 3 24 24 N 1.34655 * 126.40585 * 273.41811 * 3 2 1 25 25 C 1.46496 * 125.74424 * 0.02562 * 24 3 2 26 26 H 1.09006 * 109.47284 * 64.93227 * 1 2 3 27 27 H 1.08996 * 109.47808 * 184.93019 * 1 2 3 28 28 H 1.09000 * 109.47480 * 304.93431 * 1 2 3 29 29 H 0.97000 * 119.99765 * 359.97438 * 7 5 4 30 30 H 1.08999 * 109.46752 * 299.99682 * 8 7 5 31 31 H 1.08993 * 109.47354 * 59.99665 * 8 7 5 32 32 H 1.09003 * 113.74504 * 336.43856 * 11 9 8 33 33 H 1.09006 * 113.73819 * 107.64169 * 11 9 8 34 34 H 1.09000 * 113.76776 * 137.90945 * 12 11 9 35 35 H 1.09001 * 113.77070 * 269.19827 * 12 11 9 36 36 H 0.97007 * 119.99287 * 179.97438 * 17 16 14 37 37 H 1.07997 * 125.93107 * 179.97438 * 22 4 3 38 38 H 1.09003 * 109.47199 * 94.56850 * 25 24 3 39 39 H 1.08996 * 109.47635 * 214.57306 * 25 24 3 40 40 H 1.09006 * 109.47086 * 334.57497 * 25 24 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0435 1.2060 0.0000 4 6 2.4771 1.9108 1.1167 5 6 2.3556 1.4879 2.5185 6 8 1.8324 0.4235 2.7897 7 7 2.8238 2.2790 3.5041 8 6 2.7032 1.8571 4.9018 9 6 3.3090 2.9276 5.8118 10 1 4.3297 3.1922 5.5360 11 6 3.1262 2.6413 7.3133 12 6 2.7985 4.1386 7.4568 13 7 2.4281 4.0916 6.0291 14 6 1.5997 4.8310 5.2277 15 1 1.5421 4.6203 4.1699 16 6 0.8339 5.8514 5.7747 17 7 1.0081 6.2039 7.0308 18 14 -0.4437 6.7243 4.7281 19 1 -1.7715 6.0940 4.9401 20 1 -0.5077 8.1560 5.1169 21 1 -0.0676 6.6165 3.2956 22 6 3.0575 3.1126 0.6477 23 7 2.9704 3.1248 -0.6524 24 7 2.3487 1.9473 -1.0818 25 6 2.0703 1.5852 -2.4737 26 1 -0.3634 0.4354 -0.9309 27 1 -0.3634 -1.0238 0.0883 28 1 -0.3634 0.5885 0.8425 29 1 3.2413 3.1275 3.2879 30 1 1.6507 1.7212 5.1507 31 1 3.2346 0.9162 5.0445 32 1 2.2851 1.9847 7.5358 33 1 4.0447 2.3411 7.8178 34 1 1.9594 4.3429 8.1219 35 1 3.6687 4.7607 7.6664 36 1 0.4732 6.9173 7.4129 37 1 3.4928 3.8877 1.2610 38 1 1.1244 2.0301 -2.7827 39 1 2.8718 1.9555 -3.1129 40 1 2.0074 0.5005 -2.5614 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001038969605.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:42:18 Heat of formation + Delta-G solvation = 43.745026 kcal Electronic energy + Delta-G solvation = -23896.060921 eV Core-core repulsion = 20328.524154 eV Total energy + Delta-G solvation = -3567.536767 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.148 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.64676 -40.39986 -39.35759 -39.21389 -35.41556 -34.42082 -34.11079 -31.22745 -29.89769 -29.48890 -28.06409 -27.62728 -25.24353 -24.33036 -23.22154 -22.03327 -21.36217 -20.76157 -19.50661 -18.54308 -17.79254 -17.51748 -17.15755 -17.00507 -16.35814 -16.08044 -15.78491 -15.67618 -15.57266 -15.24820 -14.72496 -14.67512 -14.41788 -13.70052 -13.60276 -13.45158 -13.19785 -12.97076 -12.93956 -12.63894 -12.56513 -12.46153 -12.25903 -11.80227 -11.48163 -11.40952 -11.25191 -10.85278 -10.71918 -10.53401 -10.07449 -9.65752 -8.84193 -7.83754 -5.12880 0.10286 1.03034 1.06960 1.44452 1.46590 1.53637 2.29839 2.33361 2.51109 2.60075 3.33032 3.39969 3.45615 3.90659 3.99089 4.03624 4.16144 4.19585 4.28605 4.32000 4.35848 4.42199 4.55972 4.60326 4.64700 4.71638 4.78864 4.94195 5.03060 5.11408 5.16731 5.29865 5.39271 5.54992 5.66682 5.81283 6.02444 6.22510 6.34702 6.68109 7.00417 7.34305 7.70381 8.65411 9.33896 Molecular weight = 294.15amu Principal moments of inertia in cm(-1) A = 0.015747 B = 0.004631 C = 0.004035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1777.648700 B = 6045.406097 C = 6938.395720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.311 6.311 3 C 0.315 3.685 4 C -0.321 4.321 5 C 0.590 3.410 6 O -0.585 6.585 7 N -0.707 5.707 8 C 0.136 3.864 9 C 0.133 3.867 10 H 0.073 0.927 11 C -0.131 4.131 12 C 0.149 3.851 13 N -0.628 5.628 14 C -0.208 4.208 15 H 0.086 0.914 16 C -0.069 4.069 17 N -0.953 5.953 18 Si 0.960 3.040 19 H -0.297 1.297 20 H -0.298 1.298 21 H -0.266 1.266 22 C 0.097 3.903 23 N -0.292 5.292 24 N -0.365 5.365 25 C 0.082 3.918 26 H 0.074 0.926 27 H 0.128 0.872 28 H 0.037 0.963 29 H 0.407 0.593 30 H 0.042 0.958 31 H 0.079 0.921 32 H 0.077 0.923 33 H 0.094 0.906 34 H 0.036 0.964 35 H 0.023 0.977 36 H 0.244 0.756 37 H 0.215 0.785 38 H 0.097 0.903 39 H 0.109 0.891 40 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.771 -11.105 -16.637 20.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.220 6.220 3 C 0.140 3.860 4 C -0.337 4.337 5 C 0.378 3.622 6 O -0.467 6.467 7 N -0.356 5.356 8 C 0.012 3.988 9 C 0.027 3.973 10 H 0.091 0.909 11 C -0.169 4.169 12 C 0.024 3.976 13 N -0.355 5.355 14 C -0.336 4.336 15 H 0.104 0.896 16 C -0.261 4.261 17 N -0.604 5.604 18 Si 0.790 3.210 19 H -0.225 1.225 20 H -0.225 1.225 21 H -0.191 1.191 22 C -0.089 4.089 23 N -0.115 5.115 24 N -0.154 5.154 25 C -0.057 4.057 26 H 0.093 0.907 27 H 0.146 0.854 28 H 0.055 0.945 29 H 0.242 0.758 30 H 0.060 0.940 31 H 0.097 0.903 32 H 0.096 0.904 33 H 0.113 0.887 34 H 0.055 0.945 35 H 0.041 0.959 36 H 0.053 0.947 37 H 0.232 0.768 38 H 0.115 0.885 39 H 0.128 0.872 40 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 3.456 -11.258 -17.713 21.271 hybrid contribution -1.037 1.025 0.468 1.531 sum 2.419 -10.234 -17.245 20.198 Atomic orbital electron populations 1.23334 0.75086 1.05850 1.01522 1.85961 1.22901 1.20115 1.93005 1.19382 0.94911 0.84852 0.86829 1.20113 1.20392 1.00296 0.92856 1.17248 0.77343 0.83284 0.84301 1.90731 1.46656 1.24583 1.84761 1.45641 1.60875 1.23025 1.06086 1.21523 1.00207 0.97600 0.79516 1.22684 0.93791 0.86367 0.94450 0.90922 1.23555 1.02023 0.96721 0.94617 1.22176 0.96153 0.92716 0.86540 1.46468 1.47906 1.33670 1.07424 1.19316 1.13623 1.09379 0.91313 0.89632 1.25436 1.02439 1.00734 0.97506 1.70009 1.43448 1.32700 1.14209 0.85314 0.79665 0.77242 0.78758 1.22486 1.22455 1.19105 1.24275 0.96319 0.96312 0.91998 1.77187 1.19613 1.01215 1.13446 1.49273 1.44792 1.13453 1.07882 1.22410 1.04628 1.03506 0.75143 0.90738 0.85436 0.94457 0.75788 0.93974 0.90273 0.90438 0.88748 0.94513 0.95931 0.94693 0.76816 0.88502 0.87214 0.87292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.71 11.13 113.37 1.26 1.98 16 2 O -0.31 -8.26 9.74 -79.46 -0.77 -9.04 16 3 C 0.32 8.84 6.98 84.44 0.59 9.43 16 4 C -0.32 -9.99 6.15 -20.03 -0.12 -10.12 16 5 C 0.59 21.27 7.80 86.52 0.67 21.95 16 6 O -0.59 -24.57 16.38 2.67 0.04 -24.53 16 7 N -0.71 -23.91 5.55 -466.86 -2.59 -26.50 16 8 C 0.14 4.82 5.54 86.38 0.48 5.30 16 9 C 0.13 4.83 4.33 45.10 0.20 5.03 16 10 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16 11 C -0.13 -4.48 7.86 31.26 0.25 -4.23 16 12 C 0.15 6.82 7.53 86.48 0.65 7.47 16 13 N -0.63 -30.11 3.57 -694.15 -2.48 -32.59 16 14 C -0.21 -11.05 10.50 84.03 0.88 -10.17 16 15 H 0.09 4.33 7.84 -2.91 -0.02 4.30 16 16 C -0.07 -3.87 5.50 84.86 0.47 -3.40 16 17 N -0.95 -57.33 11.42 21.65 0.25 -57.08 16 18 Si 0.96 46.02 29.56 68.60 2.03 48.05 16 19 H -0.30 -14.42 7.11 99.48 0.71 -13.72 16 20 H -0.30 -14.40 7.11 99.48 0.71 -13.70 16 21 H -0.27 -11.95 7.11 99.48 0.71 -11.25 16 22 C 0.10 2.60 11.50 85.71 0.99 3.58 16 23 N -0.29 -7.64 12.48 -56.23 -0.70 -8.34 16 24 N -0.36 -8.43 3.99 -479.82 -1.91 -10.34 16 25 C 0.08 0.99 11.41 127.77 1.46 2.45 16 26 H 0.07 1.01 8.14 -2.38 -0.02 0.99 16 27 H 0.13 1.89 8.14 -2.39 -0.02 1.87 16 28 H 0.04 0.92 8.14 -2.39 -0.02 0.90 16 29 H 0.41 12.56 7.42 -92.71 -0.69 11.87 16 30 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 31 H 0.08 2.52 8.14 -2.39 -0.02 2.50 16 32 H 0.08 2.67 8.10 -2.39 -0.02 2.65 16 33 H 0.09 2.54 8.14 -2.38 -0.02 2.52 16 34 H 0.04 1.92 7.18 -2.39 -0.02 1.90 16 35 H 0.02 1.05 8.14 -2.39 -0.02 1.03 16 36 H 0.24 14.43 8.31 -92.70 -0.77 13.66 16 37 H 0.22 4.56 7.50 -2.91 -0.02 4.54 16 38 H 0.10 0.85 8.14 -2.39 -0.02 0.83 16 39 H 0.11 1.02 8.14 -2.39 -0.02 1.00 16 40 H 0.11 0.97 8.02 -2.38 -0.02 0.95 16 Total: -1.00 -76.14 346.01 1.99 -74.14 By element: Atomic # 1 Polarization: 16.60 SS G_CDS: 0.37 Total: 16.97 kcal Atomic # 6 Polarization: 21.49 SS G_CDS: 7.76 Total: 29.26 kcal Atomic # 7 Polarization: -127.42 SS G_CDS: -7.44 Total: -134.86 kcal Atomic # 8 Polarization: -32.84 SS G_CDS: -0.73 Total: -33.57 kcal Atomic # 14 Polarization: 46.02 SS G_CDS: 2.03 Total: 48.05 kcal Total: -76.14 1.99 -74.14 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038969605.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.889 kcal (2) G-P(sol) polarization free energy of solvation -76.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.144 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds