Wall clock time and date at job start Tue Mar 31 2020 04:48:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46508 * 1 3 3 C 1.37017 * 125.64799 * 2 1 4 4 C 1.35148 * 107.87315 * 180.02562 * 3 2 1 5 5 C 1.46658 * 126.37534 * 179.97438 * 4 3 2 6 6 O 1.21700 * 119.99956 * 180.02562 * 5 4 3 7 7 N 1.34775 * 120.00018 * 0.03253 * 5 4 3 8 8 C 1.46502 * 119.99654 * 179.97438 * 7 5 4 9 9 C 1.53004 * 109.46910 * 179.97438 * 8 7 5 10 10 H 1.09001 * 112.96441 * 53.31440 * 9 8 7 11 11 C 1.53943 * 113.77021 * 184.99755 * 9 8 7 12 12 C 1.53952 * 86.28744 * 137.90696 * 11 9 8 13 13 N 1.47575 * 86.11831 * 336.39343 * 12 11 9 14 14 C 1.36939 * 134.49495 * 204.63791 * 13 12 11 15 15 H 1.07990 * 120.00249 * 173.48899 * 14 13 12 16 16 C 1.38814 * 119.99406 * 353.48977 * 14 13 12 17 17 N 1.31614 * 120.00424 * 5.07046 * 16 14 13 18 18 Si 1.86805 * 119.99710 * 185.06882 * 16 14 13 19 19 H 1.48495 * 109.47229 * 94.98758 * 18 16 14 20 20 H 1.48504 * 109.47180 * 214.98975 * 18 16 14 21 21 H 1.48502 * 109.47087 * 334.98426 * 18 16 14 22 22 N 1.39837 * 107.24645 * 0.02562 * 4 3 2 23 23 C 1.46504 * 126.18353 * 179.97438 * 22 4 3 24 24 C 1.34621 * 125.65138 * 180.31586 * 2 1 3 25 25 O 1.21729 * 125.72828 * 0.02562 * 24 2 1 26 26 H 1.08996 * 109.47034 * 0.02562 * 1 2 3 27 27 H 1.08993 * 109.46870 * 120.02374 * 1 2 3 28 28 H 1.09001 * 109.46661 * 240.01924 * 1 2 3 29 29 H 1.07992 * 126.06166 * 0.02791 * 3 2 1 30 30 H 0.96998 * 119.99900 * 359.97438 * 7 5 4 31 31 H 1.08997 * 109.47204 * 299.99709 * 8 7 5 32 32 H 1.09003 * 109.47334 * 60.00035 * 8 7 5 33 33 H 1.08996 * 113.74153 * 252.25356 * 11 9 8 34 34 H 1.09000 * 113.73756 * 23.45602 * 11 9 8 35 35 H 1.09001 * 113.76530 * 90.69551 * 12 11 9 36 36 H 1.09002 * 113.76864 * 221.98116 * 12 11 9 37 37 H 0.97004 * 120.00092 * 179.97438 * 17 16 14 38 38 H 1.09005 * 109.46689 * 89.99615 * 23 22 4 39 39 H 1.08997 * 109.46965 * 330.00000 * 23 22 4 40 40 H 1.08997 * 109.46847 * 209.99697 * 23 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2636 1.1134 0.0000 4 6 3.5506 0.7008 -0.0006 5 6 4.7393 1.5598 -0.0013 6 8 5.8498 1.0618 -0.0023 7 7 4.6020 2.9005 -0.0008 8 6 5.7895 3.7584 -0.0010 9 6 5.3581 5.2264 -0.0009 10 1 4.6630 5.4654 0.8040 11 6 6.5297 6.2174 -0.1238 12 6 5.6343 6.9998 -1.1017 13 7 4.9320 5.7212 -1.3245 14 6 4.1849 5.2021 -2.3481 15 1 3.8563 4.1742 -2.3094 16 6 3.8502 5.9975 -3.4354 17 7 4.3329 7.2181 -3.5314 18 14 2.7145 5.3352 -4.7625 19 1 1.3197 5.7561 -4.4758 20 1 3.1316 5.8706 -6.0834 21 1 2.7898 3.8522 -4.7836 22 7 3.5377 -0.6975 -0.0015 23 6 4.7121 -1.5733 -0.0029 24 6 2.2497 -1.0939 -0.0060 25 8 1.8610 -2.2474 -0.0128 26 1 -0.3633 1.0276 -0.0005 27 1 -0.3633 -0.5142 -0.8897 28 1 -0.3633 -0.5136 0.8902 29 1 1.9247 2.1388 0.0004 30 1 3.7169 3.2973 -0.0003 31 1 6.3852 3.5544 0.8887 32 1 6.3846 3.5550 -0.8913 33 1 6.7475 6.7559 0.7984 34 1 7.4192 5.7901 -0.5867 35 1 5.0194 7.7609 -0.6213 36 1 6.1626 7.3717 -1.9796 37 1 4.0992 7.7737 -4.2914 38 1 5.0041 -1.7911 1.0245 39 1 5.5350 -1.0766 -0.5170 40 1 4.4710 -2.5035 -0.5172 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001039054899.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:48:02 Heat of formation + Delta-G solvation = 45.007770 kcal Electronic energy + Delta-G solvation = -23911.596691 eV Core-core repulsion = 20344.114681 eV Total energy + Delta-G solvation = -3567.482010 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.148 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.48890 -39.35363 -37.95825 -36.81557 -35.48389 -34.21492 -32.27358 -30.82061 -28.80785 -27.96423 -27.03978 -26.14855 -23.48058 -23.42843 -22.06933 -20.70054 -20.34644 -19.22641 -18.07804 -16.86557 -16.84743 -16.35837 -15.87297 -15.40286 -15.30398 -14.95534 -14.63750 -14.38127 -14.13844 -13.95998 -13.75897 -13.26546 -13.07554 -12.93527 -12.78574 -12.25960 -12.02238 -11.58500 -11.49598 -11.17151 -11.07949 -10.80998 -10.63880 -10.59058 -10.13500 -10.01090 -9.84605 -9.78482 -9.46351 -8.87974 -8.75389 -7.85612 -6.95233 -5.84723 -3.16565 1.33367 2.07590 2.76083 2.91888 3.31964 3.36752 3.38231 3.40636 3.67065 4.36633 4.50195 4.85592 4.92016 5.01229 5.06236 5.06931 5.19231 5.32771 5.33027 5.39839 5.54623 5.62487 5.68450 5.84181 5.88602 6.00191 6.21795 6.24962 6.34208 6.53825 6.56585 6.61185 6.75778 7.11479 7.19495 7.33322 7.53362 7.70148 7.90965 8.13491 8.34566 8.96935 9.64140 10.52915 11.32458 Molecular weight = 294.15amu Principal moments of inertia in cm(-1) A = 0.014910 B = 0.004780 C = 0.003977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1877.534782 B = 5856.036025 C = 7039.153770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.098 3.902 2 N -0.524 5.524 3 C 0.054 3.946 4 C -0.031 4.031 5 C 0.588 3.412 6 O -0.545 6.545 7 N -0.700 5.700 8 C 0.126 3.874 9 C 0.125 3.875 10 H 0.051 0.949 11 C -0.156 4.156 12 C 0.161 3.839 13 N -0.602 5.602 14 C -0.223 4.223 15 H 0.080 0.920 16 C -0.004 4.004 17 N -0.916 5.916 18 Si 0.903 3.097 19 H -0.289 1.289 20 H -0.291 1.291 21 H -0.280 1.280 22 N -0.510 5.510 23 C 0.101 3.899 24 C 0.647 3.353 25 O -0.571 6.571 26 H 0.093 0.907 27 H 0.076 0.924 28 H 0.076 0.924 29 H 0.193 0.807 30 H 0.403 0.597 31 H 0.064 0.936 32 H 0.075 0.925 33 H 0.054 0.946 34 H 0.077 0.923 35 H 0.029 0.971 36 H 0.069 0.931 37 H 0.254 0.746 38 H 0.066 0.934 39 H 0.100 0.900 40 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.363 -8.312 9.809 13.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 N -0.241 5.241 3 C -0.076 4.076 4 C -0.140 4.140 5 C 0.374 3.626 6 O -0.425 6.425 7 N -0.350 5.350 8 C 0.001 3.999 9 C 0.017 3.983 10 H 0.068 0.932 11 C -0.195 4.195 12 C 0.036 3.964 13 N -0.328 5.328 14 C -0.350 4.350 15 H 0.097 0.903 16 C -0.201 4.201 17 N -0.562 5.562 18 Si 0.734 3.266 19 H -0.217 1.217 20 H -0.217 1.217 21 H -0.206 1.206 22 N -0.230 5.230 23 C -0.040 4.040 24 C 0.350 3.650 25 O -0.449 6.449 26 H 0.112 0.888 27 H 0.095 0.905 28 H 0.094 0.906 29 H 0.210 0.790 30 H 0.238 0.762 31 H 0.082 0.918 32 H 0.094 0.906 33 H 0.073 0.927 34 H 0.095 0.905 35 H 0.046 0.954 36 H 0.087 0.913 37 H 0.064 0.936 38 H 0.085 0.915 39 H 0.119 0.881 40 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -2.996 -9.540 9.477 13.777 hybrid contribution -1.296 0.057 -0.836 1.543 sum -4.292 -9.482 8.641 13.528 Atomic orbital electron populations 1.21840 0.74584 1.04242 1.03698 1.44940 1.07962 1.06087 1.65110 1.22167 0.87962 0.93480 1.03995 1.19800 0.94188 0.84032 1.15935 1.16690 0.86604 0.82121 0.77203 1.90780 1.25977 1.74346 1.51367 1.45668 1.11360 1.04526 1.73439 1.21847 0.86587 0.89643 1.01787 1.22518 0.94620 0.90872 0.90283 0.93167 1.23789 0.97568 0.98482 0.99654 1.22136 0.90188 0.88913 0.95143 1.46057 1.61132 1.14255 1.11403 1.18933 1.25314 0.94918 0.95884 0.90256 1.24789 1.00555 0.96003 0.98746 1.69829 1.46880 1.08504 1.31016 0.86240 0.80788 0.78052 0.81569 1.21660 1.21706 1.20585 1.45171 1.06932 1.04993 1.65867 1.21864 0.85451 0.93430 1.03236 1.16114 0.80842 0.84848 0.83212 1.91018 1.76658 1.16349 1.60857 0.88848 0.90493 0.90551 0.79028 0.76184 0.91753 0.90640 0.92743 0.90469 0.95363 0.91256 0.93625 0.91490 0.88133 0.90209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.79 11.03 59.85 0.66 1.45 16 2 N -0.52 -6.36 3.12 -128.78 -0.40 -6.76 16 3 C 0.05 0.61 10.86 -16.33 -0.18 0.43 16 4 C -0.03 -0.43 6.88 -81.91 -0.56 -1.00 16 5 C 0.59 9.22 7.78 -12.86 -0.10 9.12 16 6 O -0.55 -9.94 14.83 5.19 0.08 -9.86 16 7 N -0.70 -10.41 5.50 -61.62 -0.34 -10.74 16 8 C 0.13 2.02 5.54 -4.04 -0.02 2.00 16 9 C 0.12 2.16 4.33 -66.86 -0.29 1.87 16 10 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 11 C -0.16 -2.61 7.86 -25.80 -0.20 -2.82 16 12 C 0.16 3.48 7.42 -2.97 -0.02 3.46 16 13 N -0.60 -13.62 3.57 -170.74 -0.61 -14.23 16 14 C -0.22 -5.61 10.50 -15.06 -0.16 -5.77 16 15 H 0.08 1.91 7.79 -52.49 -0.41 1.50 16 16 C 0.00 -0.10 5.50 -17.43 -0.10 -0.20 16 17 N -0.92 -25.84 11.51 55.49 0.64 -25.20 16 18 Si 0.90 21.06 29.56 -169.99 -5.02 16.04 16 19 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 20 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 21 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 22 N -0.51 -7.56 3.21 -124.82 -0.40 -7.96 16 23 C 0.10 1.31 10.58 59.85 0.63 1.94 16 24 C 0.65 10.03 8.49 -87.07 -0.74 9.29 16 25 O -0.57 -10.38 17.66 5.16 0.09 -10.29 16 26 H 0.09 0.49 8.06 -51.93 -0.42 0.07 16 27 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.19 1.54 7.37 -52.49 -0.39 1.15 16 30 H 0.40 5.39 7.32 -40.82 -0.30 5.09 16 31 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 32 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 33 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 34 H 0.08 1.28 8.10 -51.93 -0.42 0.86 16 35 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.07 1.68 7.36 -51.93 -0.38 1.30 16 37 H 0.25 7.01 8.31 -40.82 -0.34 6.67 16 38 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.10 1.36 6.45 -51.93 -0.33 1.03 16 40 H 0.08 0.96 8.07 -51.93 -0.42 0.54 16 LS Contribution 341.03 15.07 5.14 5.14 Total: -1.00 -34.09 341.03 -7.50 -41.59 By element: Atomic # 1 Polarization: 8.07 SS G_CDS: -5.59 Total: 2.49 kcal Atomic # 6 Polarization: 20.87 SS G_CDS: -1.08 Total: 19.79 kcal Atomic # 7 Polarization: -63.78 SS G_CDS: -1.11 Total: -64.89 kcal Atomic # 8 Polarization: -20.32 SS G_CDS: 0.17 Total: -20.15 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.04 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -34.09 -7.50 -41.59 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039054899.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.594 kcal (2) G-P(sol) polarization free energy of solvation -34.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.587 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds