Wall clock time and date at job start Tue Mar 31 2020 04:48:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46508 * 1 3 3 C 1.37017 * 125.64799 * 2 1 4 4 C 1.35148 * 107.87315 * 180.02562 * 3 2 1 5 5 C 1.46658 * 126.37534 * 179.97438 * 4 3 2 6 6 O 1.21700 * 119.99956 * 180.02562 * 5 4 3 7 7 N 1.34775 * 120.00018 * 0.03253 * 5 4 3 8 8 C 1.46502 * 119.99654 * 179.97438 * 7 5 4 9 9 C 1.53004 * 109.46910 * 179.97438 * 8 7 5 10 10 H 1.09001 * 112.96441 * 53.31440 * 9 8 7 11 11 C 1.53943 * 113.77021 * 184.99755 * 9 8 7 12 12 C 1.53952 * 86.28744 * 137.90696 * 11 9 8 13 13 N 1.47575 * 86.11831 * 336.39343 * 12 11 9 14 14 C 1.36939 * 134.49495 * 204.63791 * 13 12 11 15 15 H 1.07990 * 120.00249 * 173.48899 * 14 13 12 16 16 C 1.38814 * 119.99406 * 353.48977 * 14 13 12 17 17 N 1.31614 * 120.00424 * 5.07046 * 16 14 13 18 18 Si 1.86805 * 119.99710 * 185.06882 * 16 14 13 19 19 H 1.48495 * 109.47229 * 94.98758 * 18 16 14 20 20 H 1.48504 * 109.47180 * 214.98975 * 18 16 14 21 21 H 1.48502 * 109.47087 * 334.98426 * 18 16 14 22 22 N 1.39837 * 107.24645 * 0.02562 * 4 3 2 23 23 C 1.46504 * 126.18353 * 179.97438 * 22 4 3 24 24 C 1.34621 * 125.65138 * 180.31586 * 2 1 3 25 25 O 1.21729 * 125.72828 * 0.02562 * 24 2 1 26 26 H 1.08996 * 109.47034 * 0.02562 * 1 2 3 27 27 H 1.08993 * 109.46870 * 120.02374 * 1 2 3 28 28 H 1.09001 * 109.46661 * 240.01924 * 1 2 3 29 29 H 1.07992 * 126.06166 * 0.02791 * 3 2 1 30 30 H 0.96998 * 119.99900 * 359.97438 * 7 5 4 31 31 H 1.08997 * 109.47204 * 299.99709 * 8 7 5 32 32 H 1.09003 * 109.47334 * 60.00035 * 8 7 5 33 33 H 1.08996 * 113.74153 * 252.25356 * 11 9 8 34 34 H 1.09000 * 113.73756 * 23.45602 * 11 9 8 35 35 H 1.09001 * 113.76530 * 90.69551 * 12 11 9 36 36 H 1.09002 * 113.76864 * 221.98116 * 12 11 9 37 37 H 0.97004 * 120.00092 * 179.97438 * 17 16 14 38 38 H 1.09005 * 109.46689 * 89.99615 * 23 22 4 39 39 H 1.08997 * 109.46965 * 330.00000 * 23 22 4 40 40 H 1.08997 * 109.46847 * 209.99697 * 23 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2636 1.1134 0.0000 4 6 3.5506 0.7008 -0.0006 5 6 4.7393 1.5598 -0.0013 6 8 5.8498 1.0618 -0.0023 7 7 4.6020 2.9005 -0.0008 8 6 5.7895 3.7584 -0.0010 9 6 5.3581 5.2264 -0.0009 10 1 4.6630 5.4654 0.8040 11 6 6.5297 6.2174 -0.1238 12 6 5.6343 6.9998 -1.1017 13 7 4.9320 5.7212 -1.3245 14 6 4.1849 5.2021 -2.3481 15 1 3.8563 4.1742 -2.3094 16 6 3.8502 5.9975 -3.4354 17 7 4.3329 7.2181 -3.5314 18 14 2.7145 5.3352 -4.7625 19 1 1.3197 5.7561 -4.4758 20 1 3.1316 5.8706 -6.0834 21 1 2.7898 3.8522 -4.7836 22 7 3.5377 -0.6975 -0.0015 23 6 4.7121 -1.5733 -0.0029 24 6 2.2497 -1.0939 -0.0060 25 8 1.8610 -2.2474 -0.0128 26 1 -0.3633 1.0276 -0.0005 27 1 -0.3633 -0.5142 -0.8897 28 1 -0.3633 -0.5136 0.8902 29 1 1.9247 2.1388 0.0004 30 1 3.7169 3.2973 -0.0003 31 1 6.3852 3.5544 0.8887 32 1 6.3846 3.5550 -0.8913 33 1 6.7475 6.7559 0.7984 34 1 7.4192 5.7901 -0.5867 35 1 5.0194 7.7609 -0.6213 36 1 6.1626 7.3717 -1.9796 37 1 4.0992 7.7737 -4.2914 38 1 5.0041 -1.7911 1.0245 39 1 5.5350 -1.0766 -0.5170 40 1 4.4710 -2.5035 -0.5172 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001039054899.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:48:01 Heat of formation + Delta-G solvation = 21.196480 kcal Electronic energy + Delta-G solvation = -23912.629226 eV Core-core repulsion = 20344.114681 eV Total energy + Delta-G solvation = -3568.514545 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.148 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -43.53926 -40.63101 -39.46096 -38.01063 -36.49688 -35.49825 -34.15436 -31.84746 -29.99112 -29.68183 -28.26932 -27.06548 -25.21542 -24.63650 -23.40894 -21.79149 -21.53445 -20.77653 -19.29344 -18.35506 -17.91742 -17.58906 -17.11277 -17.02330 -16.41844 -16.13058 -16.01479 -15.66361 -15.45143 -15.13856 -15.02142 -14.67886 -14.43764 -13.97384 -13.55413 -13.46635 -13.25789 -13.21519 -12.89248 -12.64830 -12.58405 -12.50973 -12.24693 -11.85790 -11.79205 -11.46175 -11.33122 -10.99407 -10.90818 -10.76686 -10.04858 -8.92292 -8.79887 -7.82035 -5.11831 0.30338 1.09887 1.47802 1.50312 1.56987 1.62837 1.85135 2.21579 2.51047 2.60750 3.37631 3.46755 3.59595 3.93276 3.96858 4.07569 4.17510 4.22003 4.30933 4.39848 4.45161 4.46908 4.67933 4.72232 4.77021 4.79736 4.91715 4.96421 5.14446 5.18591 5.23130 5.41525 5.44790 5.59877 5.68783 5.82340 6.03839 6.07970 6.54929 7.01209 7.02024 7.18090 7.72849 8.67997 9.35878 Molecular weight = 294.15amu Principal moments of inertia in cm(-1) A = 0.014910 B = 0.004780 C = 0.003977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1877.534782 B = 5856.036025 C = 7039.153770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.517 5.517 3 C 0.090 3.910 4 C -0.067 4.067 5 C 0.592 3.408 6 O -0.578 6.578 7 N -0.694 5.694 8 C 0.135 3.865 9 C 0.135 3.865 10 H 0.078 0.922 11 C -0.133 4.133 12 C 0.151 3.849 13 N -0.628 5.628 14 C -0.207 4.207 15 H 0.091 0.909 16 C -0.069 4.069 17 N -0.954 5.954 18 Si 0.960 3.040 19 H -0.285 1.285 20 H -0.307 1.307 21 H -0.271 1.271 22 N -0.516 5.516 23 C 0.101 3.899 24 C 0.631 3.369 25 O -0.607 6.607 26 H 0.130 0.870 27 H 0.076 0.924 28 H 0.083 0.917 29 H 0.233 0.767 30 H 0.412 0.588 31 H 0.086 0.914 32 H 0.045 0.955 33 H 0.093 0.907 34 H 0.077 0.923 35 H 0.023 0.977 36 H 0.031 0.969 37 H 0.243 0.757 38 H 0.076 0.924 39 H 0.091 0.909 40 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.621 -8.490 11.478 15.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 N -0.232 5.232 3 C -0.041 4.041 4 C -0.175 4.175 5 C 0.379 3.621 6 O -0.459 6.459 7 N -0.344 5.344 8 C 0.010 3.990 9 C 0.029 3.971 10 H 0.096 0.904 11 C -0.171 4.171 12 C 0.026 3.974 13 N -0.355 5.355 14 C -0.336 4.336 15 H 0.108 0.892 16 C -0.262 4.262 17 N -0.604 5.604 18 Si 0.790 3.210 19 H -0.212 1.212 20 H -0.235 1.235 21 H -0.195 1.195 22 N -0.236 5.236 23 C -0.040 4.040 24 C 0.334 3.666 25 O -0.489 6.489 26 H 0.149 0.851 27 H 0.094 0.906 28 H 0.101 0.899 29 H 0.250 0.750 30 H 0.249 0.751 31 H 0.104 0.896 32 H 0.064 0.936 33 H 0.111 0.889 34 H 0.096 0.904 35 H 0.041 0.959 36 H 0.049 0.951 37 H 0.052 0.948 38 H 0.095 0.905 39 H 0.109 0.891 40 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -4.281 -9.719 11.188 15.426 hybrid contribution -0.903 0.098 -1.280 1.570 sum -5.183 -9.621 9.908 14.751 Atomic orbital electron populations 1.22229 0.72101 1.06847 1.04070 1.45216 1.09378 1.05283 1.63323 1.22800 0.86800 0.94646 0.99816 1.19680 0.94720 0.83585 1.19513 1.16819 0.86640 0.82256 0.76383 1.90766 1.27345 1.74878 1.52936 1.45535 1.11434 1.04208 1.73267 1.21626 0.86897 0.89005 1.01427 1.22687 0.94745 0.91508 0.88198 0.90427 1.23590 0.96628 0.97182 0.99741 1.22099 0.91133 0.89106 0.95068 1.46393 1.60804 1.15051 1.13228 1.19323 1.23055 0.95169 0.96054 0.89151 1.25479 1.02875 0.96582 1.01243 1.70008 1.49076 1.09839 1.31462 0.85322 0.79260 0.77752 0.78636 1.21222 1.23508 1.19546 1.45304 1.07119 1.05638 1.65526 1.21879 0.84942 0.93351 1.03812 1.16360 0.81297 0.85182 0.83785 1.90977 1.77308 1.17914 1.62686 0.85123 0.90573 0.89868 0.75040 0.75104 0.89592 0.93617 0.88867 0.90421 0.95916 0.95058 0.94774 0.90512 0.89052 0.89820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.12 11.03 127.77 1.41 2.53 16 2 N -0.52 -11.05 3.12 -679.64 -2.12 -13.17 16 3 C 0.09 1.71 10.86 83.17 0.90 2.62 16 4 C -0.07 -1.75 6.88 39.35 0.27 -1.48 16 5 C 0.59 17.44 7.78 86.44 0.67 18.11 16 6 O -0.58 -20.56 14.83 -4.35 -0.06 -20.63 16 7 N -0.69 -18.60 5.50 -467.09 -2.57 -21.17 16 8 C 0.13 3.99 5.54 86.38 0.48 4.47 16 9 C 0.13 4.23 4.33 45.09 0.20 4.43 16 10 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 11 C -0.13 -4.09 7.86 31.26 0.25 -3.84 16 12 C 0.15 6.45 7.42 86.48 0.64 7.09 16 13 N -0.63 -27.51 3.57 -694.08 -2.48 -29.99 16 14 C -0.21 -10.17 10.50 84.03 0.88 -9.29 16 15 H 0.09 4.13 7.79 -2.92 -0.02 4.10 16 16 C -0.07 -3.67 5.50 84.86 0.47 -3.21 16 17 N -0.95 -55.02 11.51 21.65 0.25 -54.77 16 18 Si 0.96 43.28 29.56 68.60 2.03 45.31 16 19 H -0.29 -12.49 7.11 99.48 0.71 -11.78 16 20 H -0.31 -14.57 7.11 99.48 0.71 -13.86 16 21 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 22 N -0.52 -14.80 3.21 -667.03 -2.14 -16.94 16 23 C 0.10 2.60 10.58 127.77 1.35 3.96 16 24 C 0.63 18.79 8.49 179.11 1.52 20.31 16 25 O -0.61 -21.90 17.66 -4.44 -0.08 -21.98 16 26 H 0.13 0.71 8.06 -2.39 -0.02 0.69 16 27 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 28 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 29 H 0.23 2.40 7.37 -2.91 -0.02 2.38 16 30 H 0.41 9.38 7.32 -92.71 -0.68 8.70 16 31 H 0.09 2.22 8.14 -2.39 -0.02 2.20 16 32 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 33 H 0.09 2.21 8.14 -2.39 -0.02 2.19 16 34 H 0.08 2.41 8.10 -2.39 -0.02 2.39 16 35 H 0.02 0.99 8.14 -2.39 -0.02 0.97 16 36 H 0.03 1.55 7.36 -2.39 -0.02 1.54 16 37 H 0.24 13.90 8.31 -92.71 -0.77 13.13 16 38 H 0.08 1.78 8.14 -2.38 -0.02 1.76 16 39 H 0.09 2.51 6.45 -2.39 -0.02 2.50 16 40 H 0.08 2.03 8.07 -2.39 -0.02 2.01 16 Total: -1.00 -76.09 341.03 2.24 -73.85 By element: Atomic # 1 Polarization: 13.43 SS G_CDS: 0.38 Total: 13.81 kcal Atomic # 6 Polarization: 36.65 SS G_CDS: 9.04 Total: 45.69 kcal Atomic # 7 Polarization: -126.98 SS G_CDS: -9.06 Total: -136.05 kcal Atomic # 8 Polarization: -42.46 SS G_CDS: -0.14 Total: -42.60 kcal Atomic # 14 Polarization: 43.28 SS G_CDS: 2.03 Total: 45.31 kcal Total: -76.09 2.24 -73.85 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039054899.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.044 kcal (2) G-P(sol) polarization free energy of solvation -76.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.847 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds