Wall clock time and date at job start Tue Mar 31 2020 04:35:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42899 * 109.47536 * 2 1 4 4 C 1.35998 * 117.00254 * 180.02562 * 3 2 1 5 5 C 1.39688 * 125.66951 * 180.02562 * 4 3 2 6 6 C 1.37985 * 107.63724 * 180.02562 * 5 4 3 7 7 C 1.47166 * 126.43487 * 179.97438 * 6 5 4 8 8 O 1.21629 * 120.00456 * 9.78025 * 7 6 5 9 9 N 1.34781 * 119.99779 * 189.78524 * 7 6 5 10 10 C 1.46496 * 120.00337 * 359.97164 * 9 7 6 11 11 C 1.46506 * 119.99945 * 179.97438 * 9 7 6 12 12 C 1.53493 * 114.20600 * 239.99599 * 11 9 7 13 13 N 1.47070 * 87.98728 * 220.14947 * 12 11 9 14 14 C 1.36931 * 136.05436 * 207.08533 * 13 12 11 15 15 H 1.07997 * 120.00579 * 5.11783 * 14 13 12 16 16 C 1.38817 * 119.99518 * 185.10795 * 14 13 12 17 17 N 1.31616 * 120.00247 * 5.10210 * 16 14 13 18 18 Si 1.86799 * 119.99772 * 185.09699 * 16 14 13 19 19 H 1.48504 * 109.47427 * 265.00287 * 18 16 14 20 20 H 1.48498 * 109.47251 * 25.00399 * 18 16 14 21 21 H 1.48509 * 109.47039 * 145.00504 * 18 16 14 22 22 C 1.47069 * 87.88238 * 27.34214 * 13 12 11 23 23 N 1.36667 * 107.12803 * 0.23756 * 6 5 4 24 24 H 0.96998 * 126.09653 * 179.75818 * 23 6 5 25 25 N 1.31217 * 125.67326 * 0.03529 * 4 3 2 26 26 H 1.09003 * 109.47304 * 300.00270 * 1 2 3 27 27 H 1.09004 * 109.46612 * 59.99786 * 1 2 3 28 28 H 1.08999 * 109.47255 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.47304 * 239.99730 * 2 1 3 30 30 H 1.08996 * 109.46902 * 120.00267 * 2 1 3 31 31 H 1.08003 * 126.18253 * 0.04717 * 5 4 3 32 32 H 1.09004 * 109.47153 * 276.26944 * 10 9 7 33 33 H 1.09004 * 109.47065 * 36.25943 * 10 9 7 34 34 H 1.08999 * 109.47497 * 156.26161 * 10 9 7 35 35 H 1.09001 * 113.28287 * 13.06387 * 11 9 7 36 36 H 1.09001 * 113.47056 * 105.36333 * 12 11 9 37 37 H 1.09005 * 113.46681 * 334.92809 * 12 11 9 38 38 H 0.96999 * 120.00312 * 179.97438 * 17 16 14 39 39 H 1.08996 * 113.46617 * 87.44281 * 22 13 12 40 40 H 1.09002 * 113.46401 * 217.88038 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3547 1.5254 -0.0005 5 6 4.0136 2.7571 -0.0001 6 6 5.3703 2.5055 -0.0015 7 6 6.4455 3.5103 -0.0022 8 8 6.1814 4.6839 0.1774 9 7 7.7231 3.1301 -0.2019 10 6 8.0414 1.7165 -0.4177 11 6 8.7934 4.1304 -0.2031 12 6 9.5822 4.2065 -1.5177 13 7 10.8036 4.3702 -0.7151 14 6 12.0291 4.9546 -0.8927 15 1 12.2330 5.5199 -1.7901 16 6 13.0096 4.8207 0.0808 17 7 12.7976 4.0503 1.1267 18 14 14.6298 5.7338 -0.0935 19 1 15.6352 4.8418 -0.7252 20 1 14.4317 6.9359 -0.9426 21 1 15.1107 6.1495 1.2486 22 6 10.1318 3.6244 0.3598 23 7 5.5279 1.1480 -0.0082 24 1 6.3723 0.6708 -0.0139 25 7 4.2529 0.5689 -0.0017 26 1 -0.3634 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 1.8934 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 3.5456 3.7305 0.0014 32 1 8.1312 1.2132 0.5450 33 1 7.2461 1.2496 -0.9989 34 1 8.9835 1.6348 -0.9599 35 1 8.4787 5.0987 0.1859 36 1 9.3382 5.0814 -2.1203 37 1 9.5606 3.2798 -2.0912 38 1 13.4828 3.9564 1.8068 39 1 10.2552 2.5443 0.2813 40 1 10.3561 4.0035 1.3569 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001043041303.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:35:22 Heat of formation + Delta-G solvation = 93.957876 kcal Electronic energy + Delta-G solvation = -23208.715638 eV Core-core repulsion = 19643.356264 eV Total energy + Delta-G solvation = -3565.359374 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.148 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.67597 -39.82907 -38.49086 -37.74772 -34.97841 -32.44026 -32.04765 -30.61919 -30.33045 -27.84752 -27.20557 -24.75084 -24.66977 -23.69229 -22.14949 -21.48590 -20.26112 -19.15720 -18.05381 -17.25368 -16.93694 -16.58996 -16.29173 -15.74019 -15.50279 -14.88545 -14.51782 -14.39489 -14.00614 -13.85410 -13.64743 -13.26208 -12.91474 -12.88738 -12.69109 -12.25415 -12.02013 -11.94777 -11.68813 -11.42933 -11.14506 -11.08166 -10.99011 -10.83567 -10.36851 -10.20968 -9.95822 -9.58260 -9.28739 -8.91626 -8.84176 -8.37169 -7.04277 -5.90807 -3.22993 0.98250 2.26107 2.40529 2.69040 3.14692 3.23003 3.33751 3.39256 3.41299 4.26242 4.38313 4.49173 4.66997 4.74058 4.75394 5.01387 5.07428 5.15936 5.19310 5.24166 5.36665 5.43461 5.49223 5.50893 5.56979 5.69359 5.89049 5.91833 5.98365 6.30026 6.42632 6.49913 6.73352 7.00936 7.07426 7.11915 7.31885 7.37035 7.43510 7.83156 8.06017 8.90770 9.57079 10.46833 11.27801 Molecular weight = 294.15amu Principal moments of inertia in cm(-1) A = 0.056949 B = 0.002656 C = 0.002606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 491.546524 B =10537.670562 C =10741.388578 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.059 3.941 3 O -0.289 6.289 4 C 0.261 3.739 5 C -0.197 4.197 6 C 0.070 3.930 7 C 0.580 3.420 8 O -0.514 6.514 9 N -0.587 5.587 10 C 0.051 3.949 11 C 0.084 3.916 12 C 0.106 3.894 13 N -0.601 5.601 14 C -0.221 4.221 15 H 0.085 0.915 16 C -0.005 4.005 17 N -0.919 5.919 18 Si 0.916 3.084 19 H -0.288 1.288 20 H -0.278 1.278 21 H -0.289 1.289 22 C 0.154 3.846 23 N -0.453 5.453 24 H 0.449 0.551 25 N -0.327 5.327 26 H 0.066 0.934 27 H 0.066 0.934 28 H 0.079 0.921 29 H 0.064 0.936 30 H 0.064 0.936 31 H 0.166 0.834 32 H 0.067 0.933 33 H 0.069 0.931 34 H 0.100 0.900 35 H 0.125 0.875 36 H 0.047 0.953 37 H 0.034 0.966 38 H 0.256 0.744 39 H 0.034 0.966 40 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.199 -9.954 -2.288 21.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.017 4.017 3 O -0.194 6.194 4 C 0.057 3.943 5 C -0.229 4.229 6 C -0.061 4.061 7 C 0.364 3.636 8 O -0.388 6.388 9 N -0.320 5.320 10 C -0.093 4.093 11 C -0.019 4.019 12 C -0.022 4.022 13 N -0.327 5.327 14 C -0.348 4.348 15 H 0.103 0.897 16 C -0.203 4.203 17 N -0.565 5.565 18 Si 0.746 3.254 19 H -0.215 1.215 20 H -0.204 1.204 21 H -0.215 1.215 22 C 0.027 3.973 23 N -0.180 5.180 24 H 0.304 0.696 25 N -0.170 5.170 26 H 0.085 0.915 27 H 0.085 0.915 28 H 0.097 0.903 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.184 0.816 32 H 0.085 0.915 33 H 0.087 0.913 34 H 0.119 0.881 35 H 0.143 0.857 36 H 0.066 0.934 37 H 0.052 0.948 38 H 0.066 0.934 39 H 0.052 0.948 40 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -19.061 -10.225 -2.098 21.732 hybrid contribution 1.326 0.434 -0.091 1.398 sum -17.735 -9.791 -2.189 20.376 Atomic orbital electron populations 1.21797 0.92686 1.02912 1.03544 1.22719 0.95427 0.81251 1.02254 1.86310 1.13909 1.29645 1.89517 1.20220 0.84324 0.91972 0.97741 1.21054 0.89661 0.98224 1.13911 1.21371 0.95418 0.84481 1.04845 1.17137 0.81382 0.86999 0.78036 1.90853 1.82185 1.16841 1.48947 1.47859 1.06302 1.08400 1.69407 1.22261 1.03463 0.81755 1.01837 1.24010 0.84931 0.92598 1.00335 1.22829 0.86999 0.98597 0.93732 1.45313 1.11760 1.62568 1.13069 1.18925 0.86549 1.25095 1.04201 0.89725 1.24854 0.98372 0.99650 0.97377 1.69827 1.34462 1.40491 1.11723 0.86040 0.83014 0.79233 0.77101 1.21522 1.20353 1.21469 1.22452 0.84229 0.95036 0.95551 1.47447 1.07057 1.03786 1.59675 0.69554 1.77264 0.88694 1.20657 1.30373 0.91465 0.91484 0.90272 0.91762 0.91754 0.81635 0.91464 0.91299 0.88110 0.85699 0.93448 0.94822 0.93434 0.94799 0.91198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.92 10.28 37.16 0.38 -0.54 16 2 C 0.06 0.51 6.33 37.16 0.24 0.74 16 3 O -0.29 -3.38 10.22 -19.73 -0.20 -3.59 16 4 C 0.26 3.38 7.85 -17.27 -0.14 3.25 16 5 C -0.20 -2.65 10.65 -39.13 -0.42 -3.07 16 6 C 0.07 0.94 6.72 -82.18 -0.55 0.39 16 7 C 0.58 9.09 7.66 -12.63 -0.10 8.99 16 8 O -0.51 -9.70 16.42 5.25 0.09 -9.62 16 9 N -0.59 -8.80 3.12 -174.92 -0.54 -9.34 16 10 C 0.05 0.56 7.71 59.84 0.46 1.02 16 11 C 0.08 1.57 4.57 -67.67 -0.31 1.26 16 12 C 0.11 2.09 8.23 -8.51 -0.07 2.02 16 13 N -0.60 -14.87 3.77 -184.61 -0.70 -15.57 16 14 C -0.22 -6.02 10.74 -15.06 -0.16 -6.18 16 15 H 0.09 2.22 7.83 -52.49 -0.41 1.81 16 16 C -0.01 -0.15 5.50 -17.43 -0.10 -0.24 16 17 N -0.92 -26.46 11.72 55.49 0.65 -25.81 16 18 Si 0.92 21.60 29.56 -169.99 -5.02 16.57 16 19 H -0.29 -6.76 7.11 56.52 0.40 -6.35 16 20 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 21 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 22 C 0.15 3.39 6.66 -8.37 -0.06 3.33 16 23 N -0.45 -5.24 6.41 33.41 0.21 -5.02 16 24 H 0.45 4.05 4.97 -182.65 -0.91 3.15 16 25 N -0.33 -4.14 12.05 30.46 0.37 -3.77 16 26 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 27 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.17 2.08 8.06 -52.48 -0.42 1.66 16 32 H 0.07 0.63 7.76 -51.93 -0.40 0.23 16 33 H 0.07 0.61 5.17 -51.93 -0.27 0.34 16 34 H 0.10 1.19 5.93 -51.93 -0.31 0.88 16 35 H 0.13 2.52 7.28 -51.93 -0.38 2.14 16 36 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 37 H 0.03 0.62 7.06 -51.93 -0.37 0.26 16 38 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 39 H 0.03 0.72 6.42 -51.93 -0.33 0.39 16 40 H 0.07 1.74 7.47 -51.93 -0.39 1.35 16 LS Contribution 332.60 15.07 5.01 5.01 Total: -1.00 -32.57 332.60 -6.81 -39.37 By element: Atomic # 1 Polarization: 6.65 SS G_CDS: -5.86 Total: 0.79 kcal Atomic # 6 Polarization: 11.79 SS G_CDS: -0.81 Total: 10.97 kcal Atomic # 7 Polarization: -59.51 SS G_CDS: -0.01 Total: -59.52 kcal Atomic # 8 Polarization: -13.09 SS G_CDS: -0.12 Total: -13.20 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -32.57 -6.81 -39.37 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001043041303.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.333 kcal (2) G-P(sol) polarization free energy of solvation -32.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.375 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds