Wall clock time and date at job start Tue Mar 31 2020 04:43:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46492 * 1 3 3 C 1.34259 * 125.75777 * 2 1 4 4 C 1.38042 * 107.42104 * 180.02562 * 3 2 1 5 5 C 1.47427 * 126.41303 * 179.97438 * 4 3 2 6 6 O 1.21595 * 120.00489 * 0.02603 * 5 4 3 7 7 N 1.34779 * 119.99720 * 180.02562 * 5 4 3 8 8 C 1.46498 * 120.00182 * 180.02562 * 7 5 4 9 9 C 1.52998 * 109.47546 * 180.02562 * 8 7 5 10 10 H 1.08998 * 109.67684 * 300.76571 * 9 8 7 11 11 C 1.53297 * 109.68484 * 180.24906 * 9 8 7 12 12 O 1.42960 * 109.22462 * 187.97467 * 11 9 8 13 13 C 1.42960 * 114.16580 * 62.57904 * 12 11 9 14 14 C 1.53292 * 109.22396 * 297.42039 * 13 12 11 15 15 N 1.47152 * 109.68231 * 61.28397 * 9 8 7 16 16 C 1.36939 * 120.98175 * 350.23662 * 15 9 8 17 17 H 1.08001 * 119.99811 * 31.05167 * 16 15 9 18 18 C 1.38814 * 119.99847 * 211.05474 * 16 15 9 19 19 N 1.31617 * 120.00238 * 10.77817 * 18 16 15 20 20 Si 1.86804 * 119.99792 * 190.77676 * 18 16 15 21 21 H 1.48499 * 109.46792 * 89.99931 * 20 18 16 22 22 H 1.48497 * 109.47013 * 209.99988 * 20 18 16 23 23 H 1.48507 * 109.47289 * 330.00238 * 20 18 16 24 24 C 1.41290 * 107.16952 * 359.97438 * 4 3 2 25 25 N 1.30446 * 108.02431 * 0.02562 * 24 4 3 26 26 H 1.09004 * 109.47276 * 270.00351 * 1 2 3 27 27 H 1.09000 * 109.47165 * 29.99796 * 1 2 3 28 28 H 1.09001 * 109.47401 * 150.00319 * 1 2 3 29 29 H 1.08005 * 126.28485 * 0.02562 * 3 2 1 30 30 H 0.96998 * 120.00324 * 0.02562 * 7 5 4 31 31 H 1.09009 * 109.47359 * 300.00698 * 8 7 5 32 32 H 1.08998 * 109.47330 * 60.00231 * 8 7 5 33 33 H 1.09005 * 109.50866 * 307.90027 * 11 9 8 34 34 H 1.09002 * 109.51269 * 67.99550 * 11 9 8 35 35 H 1.09003 * 109.51306 * 57.34641 * 13 12 11 36 36 H 1.09003 * 109.50944 * 177.49373 * 13 12 11 37 37 H 1.08999 * 109.68419 * 172.02733 * 14 13 12 38 38 H 1.08997 * 109.68286 * 292.57876 * 14 13 12 39 39 H 0.96995 * 119.99917 * 179.97438 * 19 18 16 40 40 H 1.07997 * 125.98707 * 179.97438 * 24 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2495 1.0895 0.0000 4 6 3.5598 0.6552 -0.0006 5 6 4.7638 1.5061 -0.0013 6 8 4.6526 2.7170 -0.0010 7 7 5.9877 0.9418 -0.0024 8 6 7.1841 1.7872 -0.0026 9 6 8.4331 0.9035 -0.0045 10 1 8.4303 0.2621 0.8768 11 6 9.6883 1.7836 0.0016 12 8 10.8415 0.9601 -0.1874 13 6 10.8714 0.2738 -1.4412 14 6 9.6769 -0.6835 -1.5212 15 7 8.4522 0.0750 -1.2204 16 6 7.3629 0.0122 -2.0478 17 1 6.7085 0.8659 -2.1448 18 6 7.0996 -1.1488 -2.7617 19 7 7.7622 -2.2531 -2.4899 20 14 5.8049 -1.1439 -4.1083 21 1 6.4387 -0.7873 -5.4030 22 1 5.1931 -2.4930 -4.2116 23 1 4.7537 -0.1473 -3.7807 24 6 3.5310 -0.7574 -0.0003 25 7 2.2826 -1.1357 -0.0002 26 1 -0.3634 0.0001 1.0277 27 1 -0.3633 0.8900 -0.5138 28 1 -0.3634 -0.8900 -0.5138 29 1 1.9165 2.1169 0.0004 30 1 6.0765 -0.0241 -0.0030 31 1 7.1838 2.4172 -0.8922 32 1 7.1849 2.4159 0.8878 33 1 9.6254 2.5130 -0.8059 34 1 9.7638 2.3035 0.9567 35 1 10.8129 0.9978 -2.2540 36 1 11.7987 -0.2932 -1.5238 37 1 9.6107 -1.1050 -2.5242 38 1 9.7996 -1.4852 -0.7930 39 1 7.5779 -3.0644 -2.9885 40 1 4.3918 -1.4096 -0.0011 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001050802198.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:43:34 Heat of formation + Delta-G solvation = 8.234622 kcal Electronic energy + Delta-G solvation = -24496.427732 eV Core-core repulsion = 20927.351118 eV Total energy + Delta-G solvation = -3569.076614 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.148 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.31275 -40.52341 -39.60440 -36.87061 -35.25462 -34.39030 -33.16886 -32.13655 -31.26209 -29.01248 -28.21834 -26.65875 -25.20341 -23.87223 -23.01022 -21.89601 -21.37189 -20.86942 -19.14310 -18.25189 -17.54906 -17.21324 -16.69333 -16.57642 -16.34687 -16.21898 -15.97870 -15.52200 -15.32251 -15.21483 -14.96821 -14.57160 -14.16451 -13.86420 -13.63247 -13.45263 -13.37375 -13.07758 -12.86759 -12.73621 -12.45917 -12.13481 -12.09195 -11.95932 -11.81936 -11.27024 -10.91481 -10.59306 -10.57088 -10.53254 -9.94963 -9.53130 -8.58617 -7.84707 -5.34480 0.57429 1.14292 1.39715 1.45498 1.48504 1.50440 2.41738 2.49854 2.60665 3.07719 3.31718 3.47335 3.56261 3.83720 4.08274 4.17203 4.18030 4.27642 4.38042 4.42798 4.51306 4.58540 4.63627 4.68324 4.68816 4.69646 4.74210 4.85879 5.05119 5.16198 5.34887 5.36775 5.63531 5.69814 5.74128 5.91352 6.33299 6.40774 6.48742 6.80944 7.14584 7.42685 7.79936 8.35738 9.19655 Molecular weight = 294.15amu Principal moments of inertia in cm(-1) A = 0.016585 B = 0.005642 C = 0.004585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1687.835089 B = 4961.169756 C = 6105.403748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.362 5.362 3 C 0.134 3.866 4 C -0.315 4.315 5 C 0.589 3.411 6 O -0.599 6.599 7 N -0.694 5.694 8 C 0.143 3.857 9 C 0.126 3.874 10 H 0.038 0.962 11 C 0.058 3.942 12 O -0.397 6.397 13 C 0.046 3.954 14 C 0.149 3.851 15 N -0.605 5.605 16 C -0.235 4.235 17 H 0.068 0.932 18 C -0.027 4.027 19 N -0.925 5.925 20 Si 0.939 3.061 21 H -0.291 1.291 22 H -0.296 1.296 23 H -0.281 1.281 24 C 0.081 3.919 25 N -0.326 5.326 26 H 0.098 0.902 27 H 0.121 0.879 28 H 0.095 0.905 29 H 0.216 0.784 30 H 0.409 0.591 31 H 0.051 0.949 32 H 0.082 0.918 33 H 0.050 0.950 34 H 0.119 0.881 35 H 0.043 0.957 36 H 0.104 0.896 37 H 0.066 0.934 38 H 0.007 0.993 39 H 0.249 0.751 40 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.744 5.884 5.897 12.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 N -0.140 5.140 3 C -0.019 4.019 4 C -0.330 4.330 5 C 0.377 3.623 6 O -0.483 6.483 7 N -0.343 5.343 8 C 0.019 3.981 9 C 0.019 3.981 10 H 0.055 0.945 11 C -0.021 4.021 12 O -0.316 6.316 13 C -0.032 4.032 14 C 0.023 3.977 15 N -0.331 5.331 16 C -0.365 4.365 17 H 0.086 0.914 18 C -0.224 4.224 19 N -0.571 5.571 20 Si 0.770 3.230 21 H -0.219 1.219 22 H -0.223 1.223 23 H -0.206 1.206 24 C -0.106 4.106 25 N -0.147 5.147 26 H 0.117 0.883 27 H 0.139 0.861 28 H 0.113 0.887 29 H 0.233 0.767 30 H 0.246 0.754 31 H 0.069 0.931 32 H 0.100 0.900 33 H 0.068 0.932 34 H 0.136 0.864 35 H 0.062 0.938 36 H 0.122 0.878 37 H 0.084 0.916 38 H 0.025 0.975 39 H 0.059 0.941 40 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -9.664 5.516 5.965 12.625 hybrid contribution -0.102 -0.371 -1.286 1.342 sum -9.766 5.145 4.679 11.989 Atomic orbital electron populations 1.22416 0.70678 1.06562 1.05554 1.48820 1.08687 1.02966 1.53555 1.23315 0.89304 0.94816 0.94488 1.20367 0.94166 0.93575 1.24873 1.17433 0.82993 0.86539 0.75294 1.90660 1.87624 1.15214 1.54824 1.45787 1.04630 1.11278 1.72620 1.21119 0.83212 0.92558 1.01192 1.21567 0.93932 0.92648 0.89924 0.94455 1.22990 0.84793 0.91761 1.02543 1.87802 1.42668 1.63026 1.38103 1.23213 0.99671 0.95102 0.85173 1.21245 0.84603 0.91795 1.00016 1.44299 1.12000 1.53638 1.23127 1.19250 1.03296 0.95727 1.18233 0.91415 1.25484 0.99809 0.95061 1.02006 1.70077 1.44581 1.00037 1.42364 0.85696 0.80191 0.76285 0.80845 1.21852 1.22286 1.20638 1.24186 0.95528 0.94395 0.96455 1.77109 1.02159 1.09200 1.26232 0.88335 0.86116 0.88669 0.76714 0.75391 0.93106 0.90031 0.93199 0.86363 0.93840 0.87823 0.91611 0.97485 0.94131 0.79574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.08 11.44 127.77 1.46 2.55 16 2 N -0.36 -8.94 3.98 -367.79 -1.46 -10.41 16 3 C 0.13 3.56 11.30 84.28 0.95 4.51 16 4 C -0.31 -10.74 6.13 -20.15 -0.12 -10.86 16 5 C 0.59 22.67 7.81 86.66 0.68 23.35 16 6 O -0.60 -25.27 16.90 -4.02 -0.07 -25.34 16 7 N -0.69 -26.59 3.79 -466.38 -1.77 -28.36 16 8 C 0.14 5.20 4.44 86.38 0.38 5.59 16 9 C 0.13 4.75 3.20 44.97 0.14 4.90 16 10 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 11 C 0.06 1.89 6.29 72.08 0.45 2.34 16 12 O -0.40 -14.51 10.74 -148.98 -1.60 -16.11 16 13 C 0.05 1.71 6.99 72.08 0.50 2.21 16 14 C 0.15 6.77 5.38 86.35 0.46 7.23 16 15 N -0.60 -27.63 3.03 -673.71 -2.04 -29.67 16 16 C -0.23 -11.66 7.11 84.03 0.60 -11.06 16 17 H 0.07 3.46 5.81 -2.91 -0.02 3.44 16 18 C -0.03 -1.40 5.06 84.86 0.43 -0.97 16 19 N -0.92 -50.65 11.13 21.65 0.24 -50.41 16 20 Si 0.94 44.29 29.57 68.60 2.03 46.31 16 21 H -0.29 -13.78 7.11 99.48 0.71 -13.07 16 22 H -0.30 -14.18 7.11 99.48 0.71 -13.47 16 23 H -0.28 -13.31 7.11 99.48 0.71 -12.60 16 24 C 0.08 2.79 11.50 85.65 0.99 3.77 16 25 N -0.33 -10.53 12.50 -56.28 -0.70 -11.23 16 26 H 0.10 0.87 8.14 -2.39 -0.02 0.85 16 27 H 0.12 0.78 8.14 -2.39 -0.02 0.76 16 28 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 29 H 0.22 4.23 8.06 -2.91 -0.02 4.21 16 30 H 0.41 16.44 6.33 -92.71 -0.59 15.86 16 31 H 0.05 2.02 7.53 -2.38 -0.02 2.00 16 32 H 0.08 2.59 8.14 -2.39 -0.02 2.57 16 33 H 0.05 1.63 8.14 -2.38 -0.02 1.61 16 34 H 0.12 3.07 8.14 -2.39 -0.02 3.05 16 35 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 36 H 0.10 3.31 8.14 -2.39 -0.02 3.29 16 37 H 0.07 3.34 6.32 -2.39 -0.02 3.32 16 38 H 0.01 0.35 8.14 -2.39 -0.02 0.33 16 39 H 0.25 13.52 8.31 -92.71 -0.77 12.75 16 40 H 0.19 6.37 7.50 -2.91 -0.02 6.34 16 Total: -1.00 -68.27 330.87 2.02 -66.25 By element: Atomic # 1 Polarization: 24.93 SS G_CDS: 0.47 Total: 25.41 kcal Atomic # 6 Polarization: 26.63 SS G_CDS: 6.93 Total: 33.56 kcal Atomic # 7 Polarization: -124.34 SS G_CDS: -5.74 Total: -130.08 kcal Atomic # 8 Polarization: -39.78 SS G_CDS: -1.67 Total: -41.44 kcal Atomic # 14 Polarization: 44.29 SS G_CDS: 2.03 Total: 46.31 kcal Total: -68.27 2.02 -66.25 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050802198.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.483 kcal (2) G-P(sol) polarization free energy of solvation -68.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.248 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds