Wall clock time and date at job start Tue Mar 31 2020 03:02:57
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50703 * 1
3 3 N 1.30271 * 126.28227 * 2 1
4 4 N 1.28663 * 109.38268 * 180.26103 * 3 2 1
5 5 C 1.30277 * 109.37956 * 359.97438 * 4 3 2
6 6 C 1.50697 * 126.28050 * 180.02562 * 5 4 3
7 7 C 1.50700 * 109.47465 * 90.00120 * 6 5 4
8 8 O 1.21280 * 119.99984 * 359.97438 * 7 6 5
9 9 N 1.34771 * 120.00030 * 180.02562 * 7 6 5
10 10 C 1.47026 * 125.64647 * 179.97438 * 9 7 6
11 11 C 1.54326 * 107.26824 * 181.01827 * 10 9 7
12 12 H 1.09004 * 110.72257 * 263.64691 * 11 10 9
13 13 C 1.52998 * 110.71827 * 140.55453 * 11 10 9
14 14 C 1.55154 * 102.94644 * 22.19000 * 11 10 9
15 15 H 1.08999 * 111.00758 * 206.41889 * 14 11 10
16 16 N 1.46507 * 111.00407 * 82.56929 * 14 11 10
17 17 C 1.36930 * 119.99963 * 155.00041 * 16 14 11
18 18 H 1.08001 * 120.00465 * 0.02562 * 17 16 14
19 19 C 1.38815 * 119.99876 * 180.02562 * 17 16 14
20 20 N 1.31623 * 119.99943 * 180.02562 * 19 17 16
21 21 Si 1.86797 * 120.00124 * 0.02562 * 19 17 16
22 22 H 1.48499 * 109.47171 * 89.99925 * 21 19 17
23 23 H 1.48499 * 109.47196 * 210.00398 * 21 19 17
24 24 H 1.48504 * 109.47076 * 330.00055 * 21 19 17
25 25 C 1.47423 * 125.64980 * 359.68198 * 9 7 6
26 26 O 1.34359 * 107.43658 * 0.02562 * 5 4 3
27 27 H 1.08996 * 109.47470 * 269.69030 * 1 2 3
28 28 H 1.09002 * 109.47204 * 29.69696 * 1 2 3
29 29 H 1.09001 * 109.47035 * 149.69011 * 1 2 3
30 30 H 1.09007 * 109.47017 * 209.99690 * 6 5 4
31 31 H 1.08999 * 109.47089 * 329.99741 * 6 5 4
32 32 H 1.08995 * 109.88080 * 300.42944 * 10 9 7
33 33 H 1.08992 * 109.88488 * 61.60497 * 10 9 7
34 34 H 1.09003 * 109.47112 * 61.45757 * 13 11 10
35 35 H 1.09003 * 109.47378 * 181.45322 * 13 11 10
36 36 H 1.08994 * 109.47212 * 301.45220 * 13 11 10
37 37 H 0.96998 * 119.99672 * 335.00378 * 16 14 11
38 38 H 0.96997 * 119.99910 * 180.02562 * 20 19 17
39 39 H 1.08996 * 110.37199 * 274.75047 * 25 9 7
40 40 H 1.09003 * 110.36619 * 37.07886 * 25 9 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 7 2.2779 1.0501 0.0000
4 7 3.5090 0.6761 -0.0055
5 6 3.5654 -0.6254 -0.0087
6 6 4.8176 -1.4638 -0.0148
7 6 5.2399 -1.7465 1.4039
8 8 4.5883 -1.3099 2.3290
9 7 6.3420 -2.4838 1.6447
10 6 6.8655 -2.8336 2.9734
11 6 8.1498 -3.6613 2.7564
12 1 7.9339 -4.7285 2.8064
13 6 9.2197 -3.2790 3.7811
14 6 8.5891 -3.2526 1.3256
15 1 9.1717 -4.0444 0.8546
16 7 9.3382 -1.9936 1.3457
17 6 10.2306 -1.7119 0.3461
18 1 10.3820 -2.4175 -0.4574
19 6 10.9406 -0.5192 0.3655
20 7 11.7981 -0.2481 -0.5956
21 14 10.6793 0.7009 1.7555
22 1 11.6288 0.4057 2.8584
23 1 10.9146 2.0792 1.2552
24 1 9.2864 0.5879 2.2581
25 6 7.2191 -3.0781 0.6196
26 8 2.3021 -1.0831 -0.0055
27 1 -0.3634 -0.0056 1.0276
28 1 -0.3634 0.8927 -0.5091
29 1 -0.3633 -0.8872 -0.5186
30 1 4.6227 -2.4043 -0.5301
31 1 5.6129 -0.9252 -0.5301
32 1 7.0990 -1.9263 3.5304
33 1 6.1301 -3.4262 3.5173
34 1 8.8539 -3.4930 4.7854
35 1 10.1252 -3.8561 3.5936
36 1 9.4422 -2.2155 3.6945
37 1 9.2019 -1.3598 2.0672
38 1 12.2945 0.5851 -0.5819
39 1 6.8288 -4.0444 0.3003
40 1 7.3152 -2.4062 -0.2333
RHF calculation, no. of doubly occupied orbitals= 55
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001054620227.mol2 40
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:02:57
Heat of formation + Delta-G solvation = 24.298564 kcal
Electronic energy + Delta-G solvation = -23885.547312 eV
Core-core repulsion = 20317.167283 eV
Total energy + Delta-G solvation = -3568.380029 eV
No. of doubly occupied orbitals = 55
Molecular weight
(most abundant/longest-lived isotopes) = 294.148 amu
Computer time = 0.60 seconds
Orbital eigenvalues (eV)
-44.26560 -40.05266 -37.89697 -36.19885 -34.11301 -33.72362 -32.62063 -31.13390
-30.76513 -28.29945 -27.65646 -25.97732 -23.78766 -23.07205 -22.59261 -21.93472
-19.53567 -19.35389 -18.00836 -17.64592 -17.15162 -16.65776 -16.33145 -15.49473
-15.10185 -14.64276 -14.56821 -14.19179 -14.05137 -13.52283 -13.35036 -13.14447
-13.03734 -12.77146 -12.49860 -12.40293 -12.39586 -12.09797 -11.86906 -11.79112
-11.54498 -11.09325 -10.99616 -10.85759 -10.65090 -10.35641 -10.13089 -10.02216
-9.66217 -9.49034 -9.13594 -8.50204 -7.40916 -5.88511 -3.25863 1.05124
2.08029 2.33554 2.61107 3.09768 3.32575 3.37309 3.42866 3.69404
4.24540 4.42131 4.50516 4.61241 4.83178 4.94304 4.95495 4.97336
5.04856 5.10700 5.23409 5.29649 5.37342 5.48221 5.49020 5.54849
5.61956 5.71098 5.75708 5.89855 5.96084 6.10291 6.15368 6.27721
6.36072 6.52605 6.63283 7.58716 7.85246 8.13851 8.26599 8.30451
9.07080 9.79968 9.97837 11.28920
Molecular weight = 294.15amu
Principal moments of inertia in cm(-1)
A = 0.017159 B = 0.004339 C = 0.003831
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1631.380213 B = 6451.361644 C = 7306.976850
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.055 4.055
2 C 0.157 3.843
3 N -0.288 5.288
4 N -0.272 5.272
5 C 0.190 3.810
6 C -0.044 4.044
7 C 0.535 3.465
8 O -0.545 6.545
9 N -0.601 5.601
10 C 0.115 3.885
11 C -0.117 4.117
12 H 0.086 0.914
13 C -0.134 4.134
14 C 0.179 3.821
15 H 0.086 0.914
16 N -0.733 5.733
17 C -0.254 4.254
18 H 0.094 0.906
19 C 0.014 3.986
20 N -0.927 5.927
21 Si 0.876 3.124
22 H -0.282 1.282
23 H -0.289 1.289
24 H -0.277 1.277
25 C 0.061 3.939
26 O -0.222 6.222
27 H 0.098 0.902
28 H 0.106 0.894
29 H 0.091 0.909
30 H 0.127 0.873
31 H 0.146 0.854
32 H 0.066 0.934
33 H 0.063 0.937
34 H 0.048 0.952
35 H 0.064 0.936
36 H 0.060 0.940
37 H 0.364 0.636
38 H 0.261 0.739
39 H 0.066 0.934
40 H 0.086 0.914
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -18.009 -8.355 2.085 19.962
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.113 4.113
2 C -0.054 4.054
3 N -0.135 5.135
4 N -0.118 5.118
5 C -0.021 4.021
6 C -0.084 4.084
7 C 0.321 3.679
8 O -0.423 6.423
9 N -0.334 5.334
10 C -0.007 4.007
11 C -0.137 4.137
12 H 0.104 0.896
13 C -0.192 4.192
14 C 0.066 3.934
15 H 0.104 0.896
16 N -0.375 5.375
17 C -0.383 4.383
18 H 0.111 0.889
19 C -0.183 4.183
20 N -0.574 5.574
21 Si 0.706 3.294
22 H -0.209 1.209
23 H -0.215 1.215
24 H -0.203 1.203
25 C -0.065 4.065
26 O -0.102 6.102
27 H 0.116 0.884
28 H 0.124 0.876
29 H 0.110 0.890
30 H 0.145 0.855
31 H 0.164 0.836
32 H 0.084 0.916
33 H 0.081 0.919
34 H 0.067 0.933
35 H 0.083 0.917
36 H 0.079 0.921
37 H 0.199 0.801
38 H 0.071 0.929
39 H 0.084 0.916
40 H 0.105 0.895
Dipole moment (debyes) X Y Z Total
from point charges -17.858 -6.814 2.343 19.257
hybrid contribution -0.438 -0.159 0.879 0.995
sum -18.296 -6.973 3.222 19.844
Atomic orbital electron populations
1.20324 0.80251 1.05524 1.05204 1.27955 0.97774 0.79732 0.99959
1.74383 0.96082 1.25685 1.17385 1.74415 1.12027 1.08994 1.16339
1.26941 0.84537 0.91294 0.99337 1.20110 0.89967 1.00546 0.97819
1.19541 0.80182 0.78285 0.89895 1.90735 1.54066 1.51679 1.45797
1.48275 1.25122 1.50878 1.09115 1.22008 0.95091 0.99209 0.84395
1.22587 0.94124 0.99321 0.97683 0.89588 1.21625 0.98096 1.02698
0.96748 1.21328 0.89735 0.90386 0.91905 0.89619 1.42749 1.47728
1.18059 1.28926 1.19035 1.14027 1.03126 1.02152 0.88864 1.24637
0.98394 0.97669 0.97584 1.69684 1.28905 1.25518 1.33259 0.86691
0.77876 0.81951 0.82876 1.20856 1.21495 1.20273 1.23598 0.92825
0.97620 0.92452 1.84730 1.17450 1.38325 1.69675 0.88379 0.87589
0.88977 0.85517 0.83606 0.91568 0.91867 0.93331 0.91677 0.92059
0.80130 0.92851 0.91602 0.89536
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.06 -0.36 10.51 36.01 0.38 0.02 16
2 C 0.16 2.02 8.48 -12.94 -0.11 1.91 16
3 N -0.29 -4.74 12.22 32.55 0.40 -4.34 16
4 N -0.27 -4.91 12.22 32.55 0.40 -4.52 16
5 C 0.19 2.97 6.97 -12.94 -0.09 2.88 16
6 C -0.04 -0.57 5.33 -29.04 -0.15 -0.73 16
7 C 0.53 8.77 7.84 -10.99 -0.09 8.69 16
8 O -0.54 -10.99 16.36 5.56 0.09 -10.89 16
9 N -0.60 -9.14 3.32 -170.40 -0.57 -9.71 16
10 C 0.12 1.69 6.46 -3.06 -0.02 1.67 16
11 C -0.12 -1.56 3.42 -88.79 -0.30 -1.86 16
12 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16
13 C -0.13 -1.84 8.80 37.16 0.33 -1.52 16
14 C 0.18 2.85 3.47 -65.67 -0.23 2.62 16
15 H 0.09 1.33 8.09 -51.93 -0.42 0.91 16
16 N -0.73 -15.44 4.37 -51.24 -0.22 -15.66 16
17 C -0.25 -6.51 10.44 -15.06 -0.16 -6.67 16
18 H 0.09 2.52 8.06 -52.49 -0.42 2.10 16
19 C 0.01 0.39 5.50 -17.43 -0.10 0.30 16
20 N -0.93 -27.86 13.97 55.49 0.78 -27.09 16
21 Si 0.88 21.70 27.74 -169.99 -4.71 16.98 16
22 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16
23 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16
24 H -0.28 -6.69 6.52 56.52 0.37 -6.32 16
25 C 0.06 0.84 6.41 -2.42 -0.02 0.83 16
26 O -0.22 -3.14 10.87 5.39 0.06 -3.08 16
27 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16
28 H 0.11 0.54 8.14 -51.93 -0.42 0.12 16
29 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16
30 H 0.13 1.16 8.14 -51.93 -0.42 0.73 16
31 H 0.15 1.82 7.85 -51.93 -0.41 1.42 16
32 H 0.07 1.09 7.82 -51.93 -0.41 0.68 16
33 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16
34 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16
35 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16
36 H 0.06 1.00 6.34 -51.93 -0.33 0.67 16
37 H 0.36 7.98 4.18 -40.82 -0.17 7.81 16
38 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16
39 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16
40 H 0.09 1.28 7.48 -51.93 -0.39 0.89 16
LS Contribution 336.85 15.07 5.08 5.08
Total: -1.00 -35.64 336.85 -4.78 -40.43
By element:
Atomic # 1 Polarization: 10.20 SS G_CDS: -5.52 Total: 4.68 kcal
Atomic # 6 Polarization: 8.69 SS G_CDS: -0.55 Total: 8.13 kcal
Atomic # 7 Polarization: -62.10 SS G_CDS: 0.78 Total: -61.32 kcal
Atomic # 8 Polarization: -14.13 SS G_CDS: 0.15 Total: -13.98 kcal
Atomic # 14 Polarization: 21.70 SS G_CDS: -4.71 Total: 16.98 kcal
Total LS contribution 5.08 Total: 5.08 kcal
Total: -35.64 -4.78 -40.43 kcal
The number of atoms in the molecule is 40
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001054620227.mol2 40
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 64.725 kcal
(2) G-P(sol) polarization free energy of solvation -35.644 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.080 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.782 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.426 kcal
(6) G-S(sol) free energy of system = (1) + (5) 24.299 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.60 seconds