Wall clock time and date at job start Tue Mar 31 2020 03:02:56
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50703 * 1
3 3 N 1.30271 * 126.28227 * 2 1
4 4 N 1.28663 * 109.38268 * 180.26103 * 3 2 1
5 5 C 1.30277 * 109.37956 * 359.97438 * 4 3 2
6 6 C 1.50697 * 126.28050 * 180.02562 * 5 4 3
7 7 C 1.50700 * 109.47465 * 90.00120 * 6 5 4
8 8 O 1.21280 * 119.99984 * 359.97438 * 7 6 5
9 9 N 1.34771 * 120.00030 * 180.02562 * 7 6 5
10 10 C 1.47026 * 125.64647 * 179.97438 * 9 7 6
11 11 C 1.54326 * 107.26824 * 181.01827 * 10 9 7
12 12 H 1.09004 * 110.72257 * 263.64691 * 11 10 9
13 13 C 1.52998 * 110.71827 * 140.55453 * 11 10 9
14 14 C 1.55154 * 102.94644 * 22.19000 * 11 10 9
15 15 H 1.08999 * 111.00758 * 206.41889 * 14 11 10
16 16 N 1.46507 * 111.00407 * 82.56929 * 14 11 10
17 17 C 1.36930 * 119.99963 * 155.00041 * 16 14 11
18 18 H 1.08001 * 120.00465 * 0.02562 * 17 16 14
19 19 C 1.38815 * 119.99876 * 180.02562 * 17 16 14
20 20 N 1.31623 * 119.99943 * 180.02562 * 19 17 16
21 21 Si 1.86797 * 120.00124 * 0.02562 * 19 17 16
22 22 H 1.48499 * 109.47171 * 89.99925 * 21 19 17
23 23 H 1.48499 * 109.47196 * 210.00398 * 21 19 17
24 24 H 1.48504 * 109.47076 * 330.00055 * 21 19 17
25 25 C 1.47423 * 125.64980 * 359.68198 * 9 7 6
26 26 O 1.34359 * 107.43658 * 0.02562 * 5 4 3
27 27 H 1.08996 * 109.47470 * 269.69030 * 1 2 3
28 28 H 1.09002 * 109.47204 * 29.69696 * 1 2 3
29 29 H 1.09001 * 109.47035 * 149.69011 * 1 2 3
30 30 H 1.09007 * 109.47017 * 209.99690 * 6 5 4
31 31 H 1.08999 * 109.47089 * 329.99741 * 6 5 4
32 32 H 1.08995 * 109.88080 * 300.42944 * 10 9 7
33 33 H 1.08992 * 109.88488 * 61.60497 * 10 9 7
34 34 H 1.09003 * 109.47112 * 61.45757 * 13 11 10
35 35 H 1.09003 * 109.47378 * 181.45322 * 13 11 10
36 36 H 1.08994 * 109.47212 * 301.45220 * 13 11 10
37 37 H 0.96998 * 119.99672 * 335.00378 * 16 14 11
38 38 H 0.96997 * 119.99910 * 180.02562 * 20 19 17
39 39 H 1.08996 * 110.37199 * 274.75047 * 25 9 7
40 40 H 1.09003 * 110.36619 * 37.07886 * 25 9 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 7 2.2779 1.0501 0.0000
4 7 3.5090 0.6761 -0.0055
5 6 3.5654 -0.6254 -0.0087
6 6 4.8176 -1.4638 -0.0148
7 6 5.2399 -1.7465 1.4039
8 8 4.5883 -1.3099 2.3290
9 7 6.3420 -2.4838 1.6447
10 6 6.8655 -2.8336 2.9734
11 6 8.1498 -3.6613 2.7564
12 1 7.9339 -4.7285 2.8064
13 6 9.2197 -3.2790 3.7811
14 6 8.5891 -3.2526 1.3256
15 1 9.1717 -4.0444 0.8546
16 7 9.3382 -1.9936 1.3457
17 6 10.2306 -1.7119 0.3461
18 1 10.3820 -2.4175 -0.4574
19 6 10.9406 -0.5192 0.3655
20 7 11.7981 -0.2481 -0.5956
21 14 10.6793 0.7009 1.7555
22 1 11.6288 0.4057 2.8584
23 1 10.9146 2.0792 1.2552
24 1 9.2864 0.5879 2.2581
25 6 7.2191 -3.0781 0.6196
26 8 2.3021 -1.0831 -0.0055
27 1 -0.3634 -0.0056 1.0276
28 1 -0.3634 0.8927 -0.5091
29 1 -0.3633 -0.8872 -0.5186
30 1 4.6227 -2.4043 -0.5301
31 1 5.6129 -0.9252 -0.5301
32 1 7.0990 -1.9263 3.5304
33 1 6.1301 -3.4262 3.5173
34 1 8.8539 -3.4930 4.7854
35 1 10.1252 -3.8561 3.5936
36 1 9.4422 -2.2155 3.6945
37 1 9.2019 -1.3598 2.0672
38 1 12.2945 0.5851 -0.5819
39 1 6.8288 -4.0444 0.3003
40 1 7.3152 -2.4062 -0.2333
RHF calculation, no. of doubly occupied orbitals= 55
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001054620227.mol2 40
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:02:56
Heat of formation + Delta-G solvation = -5.720893 kcal
Electronic energy + Delta-G solvation = -23886.849053 eV
Core-core repulsion = 20317.167283 eV
Total energy + Delta-G solvation = -3569.681770 eV
No. of doubly occupied orbitals = 55
Molecular weight
(most abundant/longest-lived isotopes) = 294.148 amu
Computer time = 0.66 seconds
Orbital eigenvalues (eV)
-45.35742 -41.29150 -39.20530 -37.31826 -35.79085 -34.77260 -33.99996 -32.71608
-31.80919 -29.68535 -28.65799 -27.09176 -25.52611 -24.25205 -23.63964 -23.21218
-20.84575 -20.55023 -19.78507 -18.84479 -18.24691 -17.86406 -17.58119 -16.73712
-16.46416 -16.02076 -15.87958 -15.45542 -15.35873 -14.72702 -14.51990 -14.24585
-14.02495 -13.86840 -13.63193 -13.54998 -13.52480 -13.35321 -13.15777 -13.05134
-13.01101 -12.89579 -12.36173 -12.10913 -12.06402 -11.93175 -11.60309 -11.43971
-11.30457 -11.01996 -10.59598 -9.81771 -9.22743 -8.01659 -5.31897 0.00081
1.06971 1.23039 1.32959 1.36899 1.38281 1.40730 1.96158 2.45796
2.73613 3.27385 3.30727 3.34867 3.58407 3.69405 3.76325 3.87747
4.01973 4.05479 4.29304 4.32893 4.37647 4.45164 4.53741 4.62166
4.64631 4.69707 4.75976 4.82909 4.96330 4.98011 5.01816 5.17484
5.20455 5.35231 5.49600 5.83091 6.24092 6.38359 6.91109 7.09714
7.15487 7.87277 8.02629 9.19513
Molecular weight = 294.15amu
Principal moments of inertia in cm(-1)
A = 0.017159 B = 0.004339 C = 0.003831
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1631.380213 B = 6451.361644 C = 7306.976850
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.056 4.056
2 C 0.172 3.828
3 N -0.333 5.333
4 N -0.317 5.317
5 C 0.185 3.815
6 C -0.038 4.038
7 C 0.529 3.471
8 O -0.590 6.590
9 N -0.601 5.601
10 C 0.111 3.889
11 C -0.100 4.100
12 H 0.127 0.873
13 C -0.135 4.135
14 C 0.162 3.838
15 H 0.097 0.903
16 N -0.740 5.740
17 C -0.213 4.213
18 H 0.078 0.922
19 C -0.052 4.052
20 N -0.978 5.978
21 Si 0.929 3.071
22 H -0.277 1.277
23 H -0.304 1.304
24 H -0.272 1.272
25 C 0.068 3.932
26 O -0.224 6.224
27 H 0.116 0.884
28 H 0.122 0.878
29 H 0.121 0.879
30 H 0.172 0.828
31 H 0.149 0.851
32 H 0.040 0.960
33 H 0.080 0.920
34 H 0.071 0.929
35 H 0.065 0.935
36 H 0.030 0.970
37 H 0.360 0.640
38 H 0.255 0.745
39 H 0.113 0.887
40 H 0.077 0.923
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -20.258 -10.965 2.535 23.174
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.113 4.113
2 C -0.039 4.039
3 N -0.180 5.180
4 N -0.163 5.163
5 C -0.028 4.028
6 C -0.078 4.078
7 C 0.317 3.683
8 O -0.472 6.472
9 N -0.332 5.332
10 C -0.011 4.011
11 C -0.119 4.119
12 H 0.144 0.856
13 C -0.193 4.193
14 C 0.052 3.948
15 H 0.115 0.885
16 N -0.382 5.382
17 C -0.344 4.344
18 H 0.096 0.904
19 C -0.244 4.244
20 N -0.629 5.629
21 Si 0.760 3.240
22 H -0.204 1.204
23 H -0.231 1.231
24 H -0.197 1.197
25 C -0.056 4.056
26 O -0.103 6.103
27 H 0.134 0.866
28 H 0.140 0.860
29 H 0.139 0.861
30 H 0.190 0.810
31 H 0.167 0.833
32 H 0.059 0.941
33 H 0.098 0.902
34 H 0.090 0.910
35 H 0.084 0.916
36 H 0.049 0.951
37 H 0.194 0.806
38 H 0.064 0.936
39 H 0.131 0.869
40 H 0.095 0.905
Dipole moment (debyes) X Y Z Total
from point charges -20.142 -9.470 2.815 22.434
hybrid contribution 0.140 0.508 0.764 0.928
sum -20.002 -8.962 3.580 22.208
Atomic orbital electron populations
1.20765 0.75865 1.07733 1.06913 1.29204 0.99611 0.78629 0.96442
1.74291 0.96119 1.27424 1.20141 1.74312 1.13369 1.10630 1.17983
1.27296 0.85649 0.91002 0.98875 1.20243 0.89102 1.02335 0.96100
1.20039 0.80008 0.77591 0.90665 1.90711 1.55629 1.53425 1.47419
1.48382 1.24729 1.50387 1.09721 1.22102 0.96189 0.98589 0.84248
1.22571 0.92855 1.01208 0.95296 0.85553 1.21627 0.98533 1.00668
0.98451 1.21716 0.90359 0.88267 0.94459 0.88515 1.42825 1.47759
1.19969 1.27649 1.19095 1.12373 1.01435 1.01527 0.90412 1.25192
0.99641 0.99864 0.99702 1.69814 1.31336 1.26058 1.35657 0.85809
0.77936 0.79471 0.80805 1.20365 1.23088 1.19743 1.23577 0.91157
0.99591 0.91299 1.84751 1.17115 1.38629 1.69846 0.86611 0.85978
0.86080 0.81042 0.83296 0.94144 0.90158 0.90985 0.91583 0.95102
0.80619 0.93601 0.86886 0.90480
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.06 -0.57 10.51 71.24 0.75 0.18 16
2 C 0.17 4.21 8.48 88.34 0.75 4.96 16
3 N -0.33 -11.04 12.22 -165.50 -2.02 -13.06 16
4 N -0.32 -11.66 12.22 -165.51 -2.02 -13.69 16
5 C 0.18 5.64 6.97 88.34 0.62 6.25 16
6 C -0.04 -0.92 5.33 29.10 0.16 -0.76 16
7 C 0.53 16.56 7.84 87.66 0.69 17.25 16
8 O -0.59 -23.61 16.36 -3.03 -0.05 -23.66 16
9 N -0.60 -16.72 3.32 -811.40 -2.70 -19.42 16
10 C 0.11 2.96 6.46 86.73 0.56 3.52 16
11 C -0.10 -2.29 3.42 -9.61 -0.03 -2.32 16
12 H 0.13 2.00 8.14 -2.39 -0.02 1.98 16
13 C -0.14 -3.39 8.80 71.98 0.63 -2.75 16
14 C 0.16 4.66 3.47 46.45 0.16 4.82 16
15 H 0.10 2.64 8.09 -2.39 -0.02 2.62 16
16 N -0.74 -30.22 4.37 -316.04 -1.38 -31.60 16
17 C -0.21 -10.86 10.44 84.04 0.88 -9.98 16
18 H 0.08 4.19 8.06 -2.91 -0.02 4.16 16
19 C -0.05 -2.93 5.50 84.86 0.47 -2.46 16
20 N -0.98 -60.32 13.97 21.65 0.30 -60.01 16
21 Si 0.93 45.91 27.74 68.60 1.90 47.81 16
22 H -0.28 -13.29 7.11 99.48 0.71 -12.59 16
23 H -0.30 -15.60 7.11 99.48 0.71 -14.89 16
24 H -0.27 -12.94 6.52 99.48 0.65 -12.29 16
25 C 0.07 1.63 6.41 86.93 0.56 2.19 16
26 O -0.22 -5.99 10.87 -3.62 -0.04 -6.03 16
27 H 0.12 0.87 8.14 -2.39 -0.02 0.85 16
28 H 0.12 0.90 8.14 -2.39 -0.02 0.88 16
29 H 0.12 0.58 8.14 -2.39 -0.02 0.56 16
30 H 0.17 2.50 8.14 -2.38 -0.02 2.48 16
31 H 0.15 3.55 7.85 -2.39 -0.02 3.53 16
32 H 0.04 1.29 7.82 -2.39 -0.02 1.27 16
33 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16
34 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16
35 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16
36 H 0.03 0.96 6.34 -2.39 -0.02 0.94 16
37 H 0.36 15.47 4.18 -92.71 -0.39 15.08 16
38 H 0.25 15.30 8.31 -92.71 -0.77 14.53 16
39 H 0.11 1.78 8.14 -2.39 -0.02 1.76 16
40 H 0.08 2.05 7.48 -2.39 -0.02 2.04 16
Total: -1.00 -81.69 336.85 0.78 -80.90
By element:
Atomic # 1 Polarization: 17.24 SS G_CDS: 0.62 Total: 17.85 kcal
Atomic # 6 Polarization: 14.72 SS G_CDS: 6.18 Total: 20.90 kcal
Atomic # 7 Polarization: -129.96 SS G_CDS: -7.82 Total: -137.78 kcal
Atomic # 8 Polarization: -29.60 SS G_CDS: -0.09 Total: -29.69 kcal
Atomic # 14 Polarization: 45.91 SS G_CDS: 1.90 Total: 47.81 kcal
Total: -81.69 0.78 -80.90 kcal
The number of atoms in the molecule is 40
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001054620227.mol2 40
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 75.183 kcal
(2) G-P(sol) polarization free energy of solvation -81.688 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.506 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.785 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.904 kcal
(6) G-S(sol) free energy of system = (1) + (5) -5.721 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.66 seconds