Wall clock time and date at job start Tue Mar 31 2020 03:03:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30271 * 126.28227 * 2 1 4 4 N 1.28663 * 109.38268 * 180.26103 * 3 2 1 5 5 C 1.30277 * 109.37956 * 359.97438 * 4 3 2 6 6 C 1.50697 * 126.28050 * 180.02562 * 5 4 3 7 7 C 1.50700 * 109.47465 * 90.00120 * 6 5 4 8 8 O 1.21280 * 119.99984 * 359.97438 * 7 6 5 9 9 N 1.34771 * 120.00030 * 180.02562 * 7 6 5 10 10 C 1.47027 * 125.64992 * 0.02562 * 9 7 6 11 11 C 1.54324 * 107.27093 * 181.02825 * 10 9 7 12 12 H 1.09002 * 110.71892 * 263.65642 * 11 10 9 13 13 N 1.46493 * 110.72108 * 140.56216 * 11 10 9 14 14 C 1.36933 * 120.00435 * 86.44849 * 13 11 10 15 15 H 1.08007 * 119.99748 * 0.02562 * 14 13 11 16 16 C 1.38813 * 120.00566 * 180.02562 * 14 13 11 17 17 N 1.31627 * 119.99319 * 0.02562 * 16 14 13 18 18 Si 1.86792 * 120.00322 * 180.02562 * 16 14 13 19 19 H 1.48495 * 109.47104 * 90.00202 * 18 16 14 20 20 H 1.48504 * 109.47078 * 210.00141 * 18 16 14 21 21 H 1.48502 * 109.47126 * 329.99693 * 18 16 14 22 22 C 1.55153 * 102.94374 * 22.19244 * 11 10 9 23 23 H 1.09007 * 111.00218 * 82.57346 * 22 11 10 24 24 C 1.52996 * 111.00768 * 206.38339 * 22 11 10 25 25 C 1.47425 * 125.65036 * 179.71594 * 9 7 6 26 26 O 1.34359 * 107.43658 * 0.02562 * 5 4 3 27 27 H 1.08996 * 109.47470 * 269.69030 * 1 2 3 28 28 H 1.09002 * 109.47204 * 29.69696 * 1 2 3 29 29 H 1.09001 * 109.47035 * 149.69011 * 1 2 3 30 30 H 1.09007 * 109.47017 * 209.99690 * 6 5 4 31 31 H 1.08999 * 109.47089 * 329.99741 * 6 5 4 32 32 H 1.08999 * 109.88486 * 300.44666 * 10 9 7 33 33 H 1.09000 * 109.87596 * 61.45703 * 10 9 7 34 34 H 0.97008 * 119.99850 * 266.45164 * 13 11 10 35 35 H 0.97001 * 119.99422 * 179.97438 * 17 16 14 36 36 H 1.09000 * 109.46861 * 60.00636 * 24 22 11 37 37 H 1.09005 * 109.47414 * 180.02562 * 24 22 11 38 38 H 1.09000 * 109.47102 * 300.00402 * 24 22 11 39 39 H 1.08999 * 110.36506 * 274.74249 * 25 9 7 40 40 H 1.09003 * 110.36364 * 37.06049 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2779 1.0501 0.0000 4 7 3.5090 0.6761 -0.0055 5 6 3.5654 -0.6254 -0.0087 6 6 4.8176 -1.4638 -0.0148 7 6 5.2399 -1.7465 1.4039 8 8 4.5883 -1.3099 2.3290 9 7 6.3420 -2.4838 1.6447 10 6 7.2207 -3.0706 0.6223 11 6 8.3311 -3.8455 1.3626 12 1 9.2276 -3.2336 1.4625 13 7 8.6369 -5.1002 0.6710 14 6 9.5489 -5.1146 -0.3503 15 1 10.0432 -4.2008 -0.6457 16 6 9.8382 -6.3034 -1.0060 17 7 9.2354 -7.4168 -0.6462 18 14 11.0829 -6.3230 -2.3986 19 1 12.4369 -6.5859 -1.8486 20 1 10.7258 -7.3912 -3.3666 21 1 11.0752 -5.0077 -3.0879 22 6 7.6948 -4.1242 2.7499 23 1 7.0493 -5.0019 2.7145 24 6 8.7714 -4.2821 3.8254 25 6 6.8700 -2.8301 2.9769 26 8 2.3021 -1.0831 -0.0055 27 1 -0.3634 -0.0056 1.0276 28 1 -0.3634 0.8927 -0.5091 29 1 -0.3633 -0.8872 -0.5186 30 1 4.6227 -2.4043 -0.5301 31 1 5.6129 -0.9252 -0.5301 32 1 6.6510 -3.7521 -0.0093 33 1 7.6598 -2.2804 0.0132 34 1 8.1931 -5.9210 0.9366 35 1 9.4373 -8.2475 -1.1046 36 1 9.3592 -3.3663 3.8883 37 1 8.2980 -4.4770 4.7877 38 1 9.4242 -5.1157 3.5665 39 1 7.5094 -2.0306 3.3511 40 1 6.0517 -3.0192 3.6718 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001054620231.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:03:00 Heat of formation + Delta-G solvation = -10.907695 kcal Electronic energy + Delta-G solvation = -23343.005062 eV Core-core repulsion = 19773.098376 eV Total energy + Delta-G solvation = -3569.906687 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.148 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -45.34489 -41.25037 -39.07427 -37.30613 -35.86042 -34.76562 -33.96560 -32.53587 -31.80243 -29.13395 -28.63003 -27.07980 -25.85295 -24.15826 -23.59086 -22.94198 -21.38637 -20.53133 -19.04951 -18.85636 -18.23035 -17.91000 -17.52971 -16.70822 -16.55203 -15.96709 -15.56504 -15.50948 -15.24722 -14.64564 -14.62112 -14.11078 -14.02556 -13.93660 -13.58356 -13.54678 -13.48066 -13.30834 -13.01956 -12.99565 -12.83206 -12.80621 -12.23090 -12.12719 -12.07888 -12.00239 -11.65551 -11.44917 -11.28100 -10.91773 -10.56898 -9.74187 -9.02749 -7.90995 -5.20285 0.00999 1.09249 1.23903 1.37100 1.53305 1.54487 1.61801 1.91588 2.59873 2.73657 3.24957 3.33510 3.41175 3.68333 3.76906 3.84311 3.89568 4.04152 4.24579 4.28566 4.32890 4.39496 4.46345 4.49724 4.54351 4.63711 4.68371 4.70267 4.89989 4.93800 5.02493 5.09944 5.16135 5.18852 5.34918 5.50184 5.60348 6.29393 6.36067 6.88923 7.15296 7.38183 8.09865 8.33136 9.31804 Molecular weight = 294.15amu Principal moments of inertia in cm(-1) A = 0.018433 B = 0.003406 C = 0.003041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1518.627712 B = 8219.989232 C = 9204.558394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 C 0.171 3.829 3 N -0.328 5.328 4 N -0.307 5.307 5 C 0.183 3.817 6 C -0.039 4.039 7 C 0.533 3.467 8 O -0.584 6.584 9 N -0.604 5.604 10 C 0.077 3.923 11 C 0.170 3.830 12 H 0.072 0.928 13 N -0.722 5.722 14 C -0.237 4.237 15 H 0.083 0.917 16 C -0.070 4.070 17 N -0.967 5.967 18 Si 0.965 3.035 19 H -0.292 1.292 20 H -0.302 1.302 21 H -0.266 1.266 22 C -0.103 4.103 23 H 0.073 0.927 24 C -0.129 4.129 25 C 0.117 3.883 26 O -0.229 6.229 27 H 0.116 0.884 28 H 0.124 0.876 29 H 0.116 0.884 30 H 0.155 0.845 31 H 0.165 0.835 32 H 0.071 0.929 33 H 0.083 0.917 34 H 0.375 0.625 35 H 0.249 0.751 36 H 0.067 0.933 37 H 0.069 0.931 38 H 0.048 0.952 39 H 0.083 0.917 40 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.611 10.940 2.655 16.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.040 4.040 3 N -0.175 5.175 4 N -0.153 5.153 5 C -0.030 4.030 6 C -0.079 4.079 7 C 0.321 3.679 8 O -0.465 6.465 9 N -0.336 5.336 10 C -0.049 4.049 11 C 0.060 3.940 12 H 0.090 0.910 13 N -0.361 5.361 14 C -0.368 4.368 15 H 0.101 0.899 16 C -0.262 4.262 17 N -0.618 5.618 18 Si 0.795 3.205 19 H -0.220 1.220 20 H -0.229 1.229 21 H -0.191 1.191 22 C -0.123 4.123 23 H 0.092 0.908 24 C -0.187 4.187 25 C -0.006 4.006 26 O -0.109 6.109 27 H 0.134 0.866 28 H 0.142 0.858 29 H 0.135 0.865 30 H 0.172 0.828 31 H 0.182 0.818 32 H 0.089 0.911 33 H 0.102 0.898 34 H 0.208 0.792 35 H 0.058 0.942 36 H 0.086 0.914 37 H 0.088 0.912 38 H 0.067 0.933 39 H 0.101 0.899 40 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -12.494 12.512 2.977 17.931 hybrid contribution 0.285 -1.880 -0.683 2.020 sum -12.209 10.632 2.294 16.351 Atomic orbital electron populations 1.20757 0.76153 1.07641 1.06899 1.29153 0.99587 0.78608 0.96620 1.74282 0.96154 1.27056 1.20000 1.74261 1.13209 1.10021 1.17812 1.27283 0.85497 0.91100 0.99110 1.20241 0.89655 1.01953 0.96089 1.20016 0.79553 0.77658 0.90696 1.90720 1.54963 1.53556 1.47285 1.48435 1.24970 1.50447 1.09770 1.23216 0.92587 0.97836 0.91218 1.21430 0.94738 0.87800 0.90037 0.91039 1.42483 1.48767 1.05471 1.39334 1.19621 1.14780 0.94282 1.08137 0.89918 1.25463 1.02455 0.95603 1.02695 1.69805 1.47494 0.99079 1.45376 0.85261 0.78757 0.77230 0.79217 1.21957 1.22888 1.19085 1.22569 0.97285 0.96614 0.95836 0.90838 1.21576 0.97471 1.02282 0.97364 1.22392 0.97420 0.96537 0.84218 1.84777 1.17484 1.38909 1.69721 0.86609 0.85760 0.86516 0.82763 0.81750 0.91109 0.89845 0.79199 0.94173 0.91426 0.91177 0.93335 0.89870 0.90907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.57 10.51 71.24 0.75 0.18 16 2 C 0.17 4.00 8.48 88.34 0.75 4.75 16 3 N -0.33 -9.91 12.22 -165.50 -2.02 -11.93 16 4 N -0.31 -10.00 12.22 -165.51 -2.02 -12.02 16 5 C 0.18 5.19 6.97 88.34 0.62 5.81 16 6 C -0.04 -0.89 5.52 29.10 0.16 -0.73 16 7 C 0.53 15.61 7.84 87.66 0.69 16.30 16 8 O -0.58 -21.72 16.29 -3.03 -0.05 -21.77 16 9 N -0.60 -16.59 3.32 -811.34 -2.70 -19.29 16 10 C 0.08 2.15 6.24 86.73 0.54 2.69 16 11 C 0.17 5.53 3.05 46.18 0.14 5.67 16 12 H 0.07 2.31 8.02 -2.39 -0.02 2.29 16 13 N -0.72 -31.30 5.18 -317.34 -1.64 -32.94 16 14 C -0.24 -11.55 9.98 84.03 0.84 -10.71 16 15 H 0.08 3.82 7.83 -2.91 -0.02 3.79 16 16 C -0.07 -3.66 5.50 84.86 0.47 -3.19 16 17 N -0.97 -55.17 13.06 21.65 0.28 -54.88 16 18 Si 0.97 42.84 29.55 68.60 2.03 44.86 16 19 H -0.29 -12.98 7.11 99.48 0.71 -12.27 16 20 H -0.30 -13.80 7.11 99.48 0.71 -13.09 16 21 H -0.27 -11.02 7.11 99.48 0.71 -10.32 16 22 C -0.10 -2.87 3.26 -9.33 -0.03 -2.90 16 23 H 0.07 2.24 8.00 -2.38 -0.02 2.22 16 24 C -0.13 -3.19 9.31 71.98 0.67 -2.52 16 25 C 0.12 3.04 6.38 86.93 0.55 3.60 16 26 O -0.23 -6.12 10.87 -3.62 -0.04 -6.16 16 27 H 0.12 0.84 8.14 -2.39 -0.02 0.82 16 28 H 0.12 0.81 8.14 -2.39 -0.02 0.79 16 29 H 0.12 0.64 8.14 -2.39 -0.02 0.62 16 30 H 0.15 2.70 8.14 -2.38 -0.02 2.68 16 31 H 0.17 2.92 8.14 -2.39 -0.02 2.90 16 32 H 0.07 2.13 8.03 -2.39 -0.02 2.11 16 33 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 34 H 0.38 18.01 7.71 -92.70 -0.72 17.30 16 35 H 0.25 14.01 8.31 -92.71 -0.77 13.24 16 36 H 0.07 1.48 8.07 -2.39 -0.02 1.46 16 37 H 0.07 1.46 8.14 -2.38 -0.02 1.44 16 38 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 39 H 0.08 1.97 7.99 -2.39 -0.02 1.95 16 40 H 0.07 1.95 8.03 -2.39 -0.02 1.93 16 Total: -1.00 -72.19 344.23 0.32 -71.87 By element: Atomic # 1 Polarization: 22.97 SS G_CDS: 0.34 Total: 23.31 kcal Atomic # 6 Polarization: 12.80 SS G_CDS: 6.14 Total: 18.95 kcal Atomic # 7 Polarization: -122.96 SS G_CDS: -8.10 Total: -131.06 kcal Atomic # 8 Polarization: -27.84 SS G_CDS: -0.09 Total: -27.93 kcal Atomic # 14 Polarization: 42.84 SS G_CDS: 2.03 Total: 44.86 kcal Total: -72.19 0.32 -71.87 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054620231.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.963 kcal (2) G-P(sol) polarization free energy of solvation -72.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.871 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds