Wall clock time and date at job start Tue Mar 31 2020 03:55:40
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52995 * 1
3 3 H 1.09002 * 110.88463 * 2 1
4 4 C 1.55132 * 110.90772 * 124.09377 * 2 1 3
5 5 N 1.47416 * 104.72286 * 155.27633 * 4 2 1
6 6 C 1.34782 * 125.64891 * 155.81633 * 5 4 2
7 7 O 1.21736 * 119.99637 * 3.71802 * 6 5 4
8 8 C 1.46373 * 120.00135 * 183.71477 * 6 5 4
9 9 C 1.36715 * 126.82895 * 4.61652 * 8 6 5
10 10 N 1.33223 * 107.96311 * 179.78389 * 9 8 6
11 11 C 1.31535 * 109.76107 * 0.40186 * 10 9 8
12 12 O 1.35206 * 125.48728 * 179.85885 * 11 10 9
13 13 N 1.34944 * 109.01319 * 359.59571 * 11 10 9
14 14 C 1.46499 * 126.53990 * 180.25750 * 13 11 10
15 15 C 1.47021 * 108.70512 * 335.55629 * 5 4 2
16 16 C 1.54319 * 107.27104 * 1.28199 * 15 5 4
17 17 H 1.09004 * 110.71721 * 140.55543 * 16 15 5
18 18 N 1.46494 * 110.72688 * 263.83304 * 16 15 5
19 19 C 1.36935 * 120.00268 * 273.55222 * 18 16 15
20 20 H 1.08010 * 119.99705 * 359.97438 * 19 18 16
21 21 C 1.38809 * 120.00281 * 179.97438 * 19 18 16
22 22 N 1.31621 * 120.00033 * 359.97438 * 21 19 18
23 23 Si 1.86807 * 119.99789 * 179.97438 * 21 19 18
24 24 H 1.48489 * 109.47374 * 359.97438 * 23 21 19
25 25 H 1.48506 * 109.46911 * 119.99889 * 23 21 19
26 26 H 1.48500 * 109.47023 * 239.99644 * 23 21 19
27 27 H 1.08999 * 109.47114 * 183.88054 * 1 2 3
28 28 H 1.08993 * 109.47561 * 303.88345 * 1 2 3
29 29 H 1.09002 * 109.46841 * 63.88363 * 1 2 3
30 30 H 1.09004 * 110.49430 * 36.43101 * 4 2 1
31 31 H 1.09003 * 110.34171 * 274.04230 * 4 2 1
32 32 H 1.08005 * 126.01349 * 0.02802 * 9 8 6
33 33 H 0.96700 * 114.00072 * 269.68958 * 12 11 10
34 34 H 1.09004 * 109.46760 * 85.07626 * 14 13 11
35 35 H 1.08997 * 109.47009 * 205.07270 * 14 13 11
36 36 H 1.09001 * 109.47592 * 325.07818 * 14 13 11
37 37 H 1.08999 * 109.88487 * 120.70491 * 15 5 4
38 38 H 1.09005 * 109.87789 * 241.71400 * 15 5 4
39 39 H 0.97002 * 120.00302 * 93.54338 * 18 16 15
40 40 H 0.97000 * 119.99910 * 179.97438 * 22 21 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.9185 1.0184 0.0000
4 6 2.0836 -0.8123 1.2001
5 7 3.4271 -1.2433 0.7729
6 6 4.4476 -1.5621 1.5935
7 8 4.2792 -1.5711 2.7991
8 6 5.7585 -1.8974 1.0351
9 6 6.1260 -1.8467 -0.2807
10 7 7.4006 -2.2248 -0.3662
11 6 7.8577 -2.5215 0.8310
12 8 9.1114 -2.9439 1.1100
13 7 6.8754 -2.3307 1.7363
14 6 6.9699 -2.5404 3.1831
15 6 3.4675 -1.2738 -0.6964
16 6 2.0862 -0.8075 -1.2025
17 1 2.1922 -0.1692 -2.0797
18 7 1.2269 -1.9568 -1.4969
19 6 1.2816 -2.5554 -2.7273
20 1 1.9582 -2.1798 -3.4809
21 6 0.4678 -3.6447 -3.0061
22 7 -0.3563 -4.1027 -2.0876
23 14 0.5421 -4.4607 -4.6849
24 1 1.5413 -3.7610 -5.5316
25 1 0.9364 -5.8837 -4.5266
26 1 -0.7928 -4.3860 -5.3311
27 1 -0.3633 -1.0253 0.0695
28 1 -0.3634 0.5729 0.8531
29 1 -0.3633 0.4524 -0.9228
30 1 1.4523 -1.6786 1.3982
31 1 2.1515 -0.1809 2.0860
32 1 5.4953 -1.5484 -1.1052
33 1 9.2169 -3.9048 1.0867
34 1 7.3778 -1.6460 3.6540
35 1 5.9777 -2.7430 3.5864
36 1 7.6244 -3.3882 3.3854
37 1 4.2426 -0.5992 -1.0601
38 1 3.6678 -2.2884 -1.0407
39 1 0.6191 -2.2940 -0.8202
40 1 -0.9253 -4.8637 -2.2826
RHF calculation, no. of doubly occupied orbitals= 55
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001054974533.mol2 40
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:55:40
Heat of formation + Delta-G solvation = 22.744164 kcal
Electronic energy + Delta-G solvation = -24217.707685 eV
Core-core repulsion = 20649.260252 eV
Total energy + Delta-G solvation = -3568.447433 eV
No. of doubly occupied orbitals = 55
Molecular weight
(most abundant/longest-lived isotopes) = 294.148 amu
Computer time = 0.67 seconds
Orbital eigenvalues (eV)
-42.30095 -39.69825 -37.74793 -37.34653 -34.41825 -33.82938 -32.54942 -30.61662
-29.45603 -27.94510 -27.17749 -25.97930 -24.12617 -23.11789 -21.71796 -21.53653
-19.45901 -19.24308 -18.65718 -17.60539 -16.82358 -16.60502 -15.96015 -15.86649
-15.05971 -14.71277 -14.43661 -14.22061 -14.13689 -13.65845 -13.08616 -13.06171
-12.89295 -12.78811 -12.62526 -12.40911 -12.04285 -11.90506 -11.62570 -11.15485
-10.95654 -10.77461 -10.50936 -10.32693 -10.25481 -9.95968 -9.88158 -9.77421
-9.67899 -9.04434 -8.60157 -8.31557 -7.09861 -5.86612 -3.16821 1.17342
2.07241 2.60600 3.24290 3.38824 3.40104 3.45668 3.47230 3.68886
4.50351 4.51657 4.63682 4.90135 5.01136 5.03816 5.11564 5.26614
5.29706 5.39028 5.49607 5.61827 5.70383 5.82184 5.87185 5.91095
6.11172 6.20672 6.27453 6.28239 6.34276 6.38137 6.46933 6.55381
6.70126 6.88388 7.34532 7.63042 7.69337 7.72765 8.25120 8.31316
9.43617 9.97287 10.31752 11.35479
Molecular weight = 294.15amu
Principal moments of inertia in cm(-1)
A = 0.015425 B = 0.004720 C = 0.003930
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1814.798099 B = 5931.383705 C = 7122.186625
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.131 4.131
2 C -0.114 4.114
3 H 0.081 0.919
4 C 0.119 3.881
5 N -0.590 5.590
6 C 0.606 3.394
7 O -0.561 6.561
8 C -0.069 4.069
9 C 0.046 3.954
10 N -0.487 5.487
11 C 0.388 3.612
12 O -0.441 6.441
13 N -0.431 5.431
14 C 0.069 3.931
15 C 0.059 3.941
16 C 0.172 3.828
17 H 0.074 0.926
18 N -0.711 5.711
19 C -0.247 4.247
20 H 0.074 0.926
21 C -0.007 4.007
22 N -0.929 5.929
23 Si 0.906 3.094
24 H -0.279 1.279
25 H -0.292 1.292
26 H -0.291 1.291
27 H 0.070 0.930
28 H 0.045 0.955
29 H 0.061 0.939
30 H 0.074 0.926
31 H 0.071 0.929
32 H 0.200 0.800
33 H 0.403 0.597
34 H 0.080 0.920
35 H 0.108 0.892
36 H 0.082 0.918
37 H 0.065 0.935
38 H 0.086 0.914
39 H 0.387 0.613
40 H 0.256 0.744
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 11.453 5.432 8.160 15.076
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.189 4.189
2 C -0.134 4.134
3 H 0.099 0.901
4 C -0.002 4.002
5 N -0.321 5.321
6 C 0.395 3.605
7 O -0.442 6.442
8 C -0.185 4.185
9 C -0.108 4.108
10 N -0.216 5.216
11 C 0.089 3.911
12 O -0.242 6.242
13 N -0.124 5.124
14 C -0.073 4.073
15 C -0.067 4.067
16 C 0.059 3.941
17 H 0.092 0.908
18 N -0.352 5.352
19 C -0.378 4.378
20 H 0.092 0.908
21 C -0.204 4.204
22 N -0.577 5.577
23 Si 0.737 3.263
24 H -0.204 1.204
25 H -0.219 1.219
26 H -0.219 1.219
27 H 0.088 0.912
28 H 0.064 0.936
29 H 0.080 0.920
30 H 0.092 0.908
31 H 0.090 0.910
32 H 0.217 0.783
33 H 0.260 0.740
34 H 0.098 0.902
35 H 0.126 0.874
36 H 0.101 0.899
37 H 0.082 0.918
38 H 0.104 0.896
39 H 0.223 0.777
40 H 0.066 0.934
Dipole moment (debyes) X Y Z Total
from point charges 12.149 5.804 8.210 15.770
hybrid contribution -0.389 -1.301 0.088 1.361
sum 11.760 4.503 8.298 15.081
Atomic orbital electron populations
1.21547 0.93224 1.03037 1.01092 1.22679 0.97071 0.98510 0.95151
0.90059 1.22365 0.81897 0.98524 0.97457 1.47997 1.11392 1.64853
1.07876 1.16159 0.81672 0.77503 0.85213 1.90761 1.83973 1.55398
1.14078 1.20524 0.89537 1.15683 0.92706 1.23457 0.91586 1.00557
0.95177 1.70356 1.11371 1.19997 1.19839 1.20269 0.83181 1.03588
0.84051 1.84805 1.19499 1.29071 1.90786 1.45585 1.09192 1.48548
1.09068 1.22235 1.06012 1.02781 0.76282 1.23749 1.01944 1.02649
0.78352 1.21233 0.88104 0.89932 0.94786 0.90810 1.42467 1.45292
1.32735 1.14744 1.19282 1.18587 1.09391 0.90524 0.90787 1.24742
0.98901 0.98836 0.97901 1.69664 1.27347 1.27487 1.33155 0.86143
0.77263 0.79244 0.83662 1.20375 1.21896 1.21858 0.91156 0.93619
0.91968 0.90814 0.91034 0.78349 0.74029 0.90184 0.87357 0.89915
0.91750 0.89604 0.77719 0.93432
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -1.93 8.85 37.16 0.33 -1.60 16
2 C -0.11 -1.66 3.53 -88.35 -0.31 -1.97 16
3 H 0.08 1.03 8.14 -51.93 -0.42 0.60 16
4 C 0.12 1.86 6.34 -2.41 -0.02 1.84 16
5 N -0.59 -9.62 3.32 -172.03 -0.57 -10.19 16
6 C 0.61 10.34 7.80 -12.99 -0.10 10.24 16
7 O -0.56 -10.49 15.13 5.16 0.08 -10.41 16
8 C -0.07 -1.08 6.88 -81.98 -0.56 -1.65 16
9 C 0.05 0.71 10.42 -17.50 -0.18 0.52 16
10 N -0.49 -7.67 11.22 -14.62 -0.16 -7.84 16
11 C 0.39 5.33 9.01 -89.60 -0.81 4.53 16
12 O -0.44 -4.54 13.53 -17.31 -0.23 -4.77 16
13 N -0.43 -5.94 3.20 -122.12 -0.39 -6.33 16
14 C 0.07 0.72 10.72 59.85 0.64 1.37 16
15 C 0.06 0.93 4.79 -3.07 -0.01 0.92 16
16 C 0.17 2.94 3.36 -66.10 -0.22 2.72 16
17 H 0.07 1.23 8.12 -51.93 -0.42 0.80 16
18 N -0.71 -15.75 4.61 -51.65 -0.24 -15.99 16
19 C -0.25 -6.23 9.98 -15.06 -0.15 -6.38 16
20 H 0.07 1.80 7.83 -52.48 -0.41 1.39 16
21 C -0.01 -0.19 5.50 -17.43 -0.10 -0.29 16
22 N -0.93 -26.55 13.06 55.49 0.72 -25.82 16
23 Si 0.91 21.35 29.55 -169.99 -5.02 16.33 16
24 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16
25 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16
26 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16
27 H 0.07 1.21 6.37 -51.93 -0.33 0.88 16
28 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16
29 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16
30 H 0.07 1.26 7.99 -51.93 -0.41 0.84 16
31 H 0.07 1.05 8.07 -51.93 -0.42 0.63 16
32 H 0.20 2.77 4.44 -52.48 -0.23 2.54 16
33 H 0.40 2.00 9.06 45.56 0.41 2.42 16
34 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16
35 H 0.11 1.31 6.34 -51.93 -0.33 0.98 16
36 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16
37 H 0.06 0.86 6.23 -51.93 -0.32 0.54 16
38 H 0.09 1.55 7.49 -51.93 -0.39 1.16 16
39 H 0.39 9.27 6.10 -40.82 -0.25 9.02 16
40 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16
LS Contribution 329.22 15.07 4.96 4.96
Total: -1.00 -32.42 329.22 -6.71 -39.13
By element:
Atomic # 1 Polarization: 15.04 SS G_CDS: -4.36 Total: 10.68 kcal
Atomic # 6 Polarization: 11.75 SS G_CDS: -1.49 Total: 10.25 kcal
Atomic # 7 Polarization: -65.53 SS G_CDS: -0.64 Total: -66.17 kcal
Atomic # 8 Polarization: -15.02 SS G_CDS: -0.16 Total: -15.18 kcal
Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal
Total LS contribution 4.96 Total: 4.96 kcal
Total: -32.42 -6.71 -39.13 kcal
The number of atoms in the molecule is 40
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001054974533.mol2 40
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 61.878 kcal
(2) G-P(sol) polarization free energy of solvation -32.422 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.456 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.712 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.134 kcal
(6) G-S(sol) free energy of system = (1) + (5) 22.744 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.67 seconds