Wall clock time and date at job start Tue Mar 31 2020 03:55:39
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52995 * 1
3 3 H 1.09002 * 110.88463 * 2 1
4 4 C 1.55132 * 110.90772 * 124.09377 * 2 1 3
5 5 N 1.47416 * 104.72286 * 155.27633 * 4 2 1
6 6 C 1.34782 * 125.64891 * 155.81633 * 5 4 2
7 7 O 1.21736 * 119.99637 * 3.71802 * 6 5 4
8 8 C 1.46373 * 120.00135 * 183.71477 * 6 5 4
9 9 C 1.36715 * 126.82895 * 4.61652 * 8 6 5
10 10 N 1.33223 * 107.96311 * 179.78389 * 9 8 6
11 11 C 1.31535 * 109.76107 * 0.40186 * 10 9 8
12 12 O 1.35206 * 125.48728 * 179.85885 * 11 10 9
13 13 N 1.34944 * 109.01319 * 359.59571 * 11 10 9
14 14 C 1.46499 * 126.53990 * 180.25750 * 13 11 10
15 15 C 1.47021 * 108.70512 * 335.55629 * 5 4 2
16 16 C 1.54319 * 107.27104 * 1.28199 * 15 5 4
17 17 H 1.09004 * 110.71721 * 140.55543 * 16 15 5
18 18 N 1.46494 * 110.72688 * 263.83304 * 16 15 5
19 19 C 1.36935 * 120.00268 * 273.55222 * 18 16 15
20 20 H 1.08010 * 119.99705 * 359.97438 * 19 18 16
21 21 C 1.38809 * 120.00281 * 179.97438 * 19 18 16
22 22 N 1.31621 * 120.00033 * 359.97438 * 21 19 18
23 23 Si 1.86807 * 119.99789 * 179.97438 * 21 19 18
24 24 H 1.48489 * 109.47374 * 359.97438 * 23 21 19
25 25 H 1.48506 * 109.46911 * 119.99889 * 23 21 19
26 26 H 1.48500 * 109.47023 * 239.99644 * 23 21 19
27 27 H 1.08999 * 109.47114 * 183.88054 * 1 2 3
28 28 H 1.08993 * 109.47561 * 303.88345 * 1 2 3
29 29 H 1.09002 * 109.46841 * 63.88363 * 1 2 3
30 30 H 1.09004 * 110.49430 * 36.43101 * 4 2 1
31 31 H 1.09003 * 110.34171 * 274.04230 * 4 2 1
32 32 H 1.08005 * 126.01349 * 0.02802 * 9 8 6
33 33 H 0.96700 * 114.00072 * 269.68958 * 12 11 10
34 34 H 1.09004 * 109.46760 * 85.07626 * 14 13 11
35 35 H 1.08997 * 109.47009 * 205.07270 * 14 13 11
36 36 H 1.09001 * 109.47592 * 325.07818 * 14 13 11
37 37 H 1.08999 * 109.88487 * 120.70491 * 15 5 4
38 38 H 1.09005 * 109.87789 * 241.71400 * 15 5 4
39 39 H 0.97002 * 120.00302 * 93.54338 * 18 16 15
40 40 H 0.97000 * 119.99910 * 179.97438 * 22 21 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.9185 1.0184 0.0000
4 6 2.0836 -0.8123 1.2001
5 7 3.4271 -1.2433 0.7729
6 6 4.4476 -1.5621 1.5935
7 8 4.2792 -1.5711 2.7991
8 6 5.7585 -1.8974 1.0351
9 6 6.1260 -1.8467 -0.2807
10 7 7.4006 -2.2248 -0.3662
11 6 7.8577 -2.5215 0.8310
12 8 9.1114 -2.9439 1.1100
13 7 6.8754 -2.3307 1.7363
14 6 6.9699 -2.5404 3.1831
15 6 3.4675 -1.2738 -0.6964
16 6 2.0862 -0.8075 -1.2025
17 1 2.1922 -0.1692 -2.0797
18 7 1.2269 -1.9568 -1.4969
19 6 1.2816 -2.5554 -2.7273
20 1 1.9582 -2.1798 -3.4809
21 6 0.4678 -3.6447 -3.0061
22 7 -0.3563 -4.1027 -2.0876
23 14 0.5421 -4.4607 -4.6849
24 1 1.5413 -3.7610 -5.5316
25 1 0.9364 -5.8837 -4.5266
26 1 -0.7928 -4.3860 -5.3311
27 1 -0.3633 -1.0253 0.0695
28 1 -0.3634 0.5729 0.8531
29 1 -0.3633 0.4524 -0.9228
30 1 1.4523 -1.6786 1.3982
31 1 2.1515 -0.1809 2.0860
32 1 5.4953 -1.5484 -1.1052
33 1 9.2169 -3.9048 1.0867
34 1 7.3778 -1.6460 3.6540
35 1 5.9777 -2.7430 3.5864
36 1 7.6244 -3.3882 3.3854
37 1 4.2426 -0.5992 -1.0601
38 1 3.6678 -2.2884 -1.0407
39 1 0.6191 -2.2940 -0.8202
40 1 -0.9253 -4.8637 -2.2826
RHF calculation, no. of doubly occupied orbitals= 55
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001054974533.mol2 40
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:55:39
Heat of formation + Delta-G solvation = -3.121683 kcal
Electronic energy + Delta-G solvation = -24218.829312 eV
Core-core repulsion = 20649.260252 eV
Total energy + Delta-G solvation = -3569.569060 eV
No. of doubly occupied orbitals = 55
Molecular weight
(most abundant/longest-lived isotopes) = 294.148 amu
Computer time = 0.66 seconds
Orbital eigenvalues (eV)
-43.39032 -40.99342 -39.01042 -38.33502 -35.82562 -35.14271 -33.99604 -32.28817
-30.61791 -29.44808 -28.13420 -27.19237 -25.86287 -24.50865 -22.80611 -22.73623
-20.74789 -20.49698 -19.62147 -19.35069 -18.04145 -17.76635 -17.24145 -17.09423
-16.40969 -16.26211 -15.72092 -15.47617 -15.31991 -15.12619 -14.66587 -14.24103
-14.12547 -13.79873 -13.71249 -13.47214 -13.31680 -13.09398 -13.03534 -12.84252
-12.78423 -12.28059 -12.03396 -11.91691 -11.50923 -11.40806 -11.31709 -11.05745
-10.92184 -10.90457 -9.82079 -9.55019 -8.96360 -7.88681 -5.15982 0.05116
1.03397 1.50370 1.51780 1.53906 1.62028 2.02887 2.16471 2.61169
2.76817 3.30729 3.43385 3.70967 3.77676 3.85884 3.90755 3.97273
4.10192 4.23887 4.26300 4.44365 4.56705 4.62246 4.65680 4.74501
4.86663 4.90388 4.99652 5.04977 5.19287 5.25676 5.29595 5.37539
5.53282 5.60085 5.65227 6.33338 6.40101 6.50726 6.63445 6.96049
7.41535 8.15927 8.37872 9.34873
Molecular weight = 294.15amu
Principal moments of inertia in cm(-1)
A = 0.015425 B = 0.004720 C = 0.003930
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1814.798099 B = 5931.383705 C = 7122.186625
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.126 4.126
2 C -0.098 4.098
3 H 0.114 0.886
4 C 0.119 3.881
5 N -0.592 5.592
6 C 0.603 3.397
7 O -0.583 6.583
8 C -0.092 4.092
9 C 0.049 3.951
10 N -0.517 5.517
11 C 0.403 3.597
12 O -0.437 6.437
13 N -0.432 5.432
14 C 0.066 3.934
15 C 0.070 3.930
16 C 0.162 3.838
17 H 0.088 0.912
18 N -0.722 5.722
19 C -0.230 4.230
20 H 0.085 0.915
21 C -0.072 4.072
22 N -0.969 5.969
23 Si 0.962 3.038
24 H -0.262 1.262
25 H -0.303 1.303
26 H -0.299 1.299
27 H 0.037 0.963
28 H 0.071 0.929
29 H 0.058 0.942
30 H 0.050 0.950
31 H 0.083 0.917
32 H 0.207 0.793
33 H 0.428 0.572
34 H 0.090 0.910
35 H 0.089 0.911
36 H 0.117 0.883
37 H 0.097 0.903
38 H 0.062 0.938
39 H 0.375 0.625
40 H 0.247 0.753
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 13.463 6.711 8.080 17.075
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.183 4.183
2 C -0.118 4.118
3 H 0.132 0.868
4 C -0.003 4.003
5 N -0.322 5.322
6 C 0.393 3.607
7 O -0.466 6.466
8 C -0.208 4.208
9 C -0.105 4.105
10 N -0.246 5.246
11 C 0.103 3.897
12 O -0.241 6.241
13 N -0.125 5.125
14 C -0.075 4.075
15 C -0.055 4.055
16 C 0.051 3.949
17 H 0.106 0.894
18 N -0.362 5.362
19 C -0.362 4.362
20 H 0.103 0.897
21 C -0.264 4.264
22 N -0.621 5.621
23 Si 0.793 3.207
24 H -0.186 1.186
25 H -0.231 1.231
26 H -0.226 1.226
27 H 0.056 0.944
28 H 0.090 0.910
29 H 0.077 0.923
30 H 0.069 0.931
31 H 0.102 0.898
32 H 0.223 0.777
33 H 0.290 0.710
34 H 0.108 0.892
35 H 0.108 0.892
36 H 0.135 0.865
37 H 0.114 0.886
38 H 0.080 0.920
39 H 0.209 0.791
40 H 0.056 0.944
Dipole moment (debyes) X Y Z Total
from point charges 14.212 7.108 8.129 17.849
hybrid contribution -0.869 -1.661 0.189 1.884
sum 13.344 5.447 8.318 16.641
Atomic orbital electron populations
1.21475 0.93396 1.01381 1.02096 1.22651 0.96786 0.99419 0.92934
0.86766 1.22367 0.81385 0.98001 0.98524 1.48052 1.11490 1.64725
1.07972 1.16369 0.82244 0.77087 0.84988 1.90742 1.84475 1.56468
1.14941 1.20392 0.89720 1.17500 0.93198 1.23577 0.91731 0.99999
0.95228 1.70354 1.11649 1.21460 1.21130 1.20359 0.83729 1.02002
0.83592 1.84776 1.17414 1.31487 1.90471 1.45760 1.08593 1.47994
1.10150 1.22424 1.05808 1.04719 0.74550 1.23538 1.01799 1.02012
0.78184 1.21524 0.87993 0.88800 0.96551 0.89395 1.42625 1.45997
1.33990 1.13576 1.19702 1.16751 1.08224 0.91521 0.89686 1.25420
0.99843 1.00406 1.00764 1.69813 1.29047 1.28271 1.34924 0.85224
0.77015 0.77782 0.80672 1.18588 1.23085 1.22647 0.94365 0.90981
0.92280 0.93139 0.89820 0.77692 0.71014 0.89180 0.89208 0.86473
0.88559 0.91955 0.79079 0.94390
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -3.55 8.85 71.98 0.64 -2.92 16
2 C -0.10 -2.66 3.53 -9.32 -0.03 -2.69 16
3 H 0.11 2.43 8.14 -2.39 -0.02 2.41 16
4 C 0.12 3.60 6.34 86.94 0.55 4.16 16
5 N -0.59 -18.76 3.32 -816.38 -2.71 -21.47 16
6 C 0.60 20.23 7.80 86.36 0.67 20.90 16
7 O -0.58 -21.66 15.13 -4.46 -0.07 -21.73 16
8 C -0.09 -2.81 6.88 39.80 0.27 -2.54 16
9 C 0.05 1.43 10.42 84.13 0.88 2.31 16
10 N -0.52 -15.41 11.22 -313.65 -3.52 -18.93 16
11 C 0.40 10.18 9.01 179.99 1.62 11.80 16
12 O -0.44 -7.65 13.53 -84.87 -1.15 -8.80 16
13 N -0.43 -11.17 3.20 -652.01 -2.09 -13.26 16
14 C 0.07 1.26 10.72 127.77 1.37 2.63 16
15 C 0.07 2.11 4.79 86.73 0.42 2.53 16
16 C 0.16 5.28 3.36 46.18 0.16 5.44 16
17 H 0.09 2.68 8.12 -2.38 -0.02 2.66 16
18 N -0.72 -31.97 4.61 -317.33 -1.46 -33.43 16
19 C -0.23 -11.53 9.98 84.03 0.84 -10.69 16
20 H 0.09 4.00 7.83 -2.91 -0.02 3.98 16
21 C -0.07 -3.91 5.50 84.86 0.47 -3.44 16
22 N -0.97 -57.04 13.06 21.65 0.28 -56.76 16
23 Si 0.96 44.33 29.55 68.60 2.03 46.36 16
24 H -0.26 -11.15 7.11 99.48 0.71 -10.45 16
25 H -0.30 -14.35 7.11 99.48 0.71 -13.64 16
26 H -0.30 -13.97 7.11 99.48 0.71 -13.26 16
27 H 0.04 1.33 6.37 -2.39 -0.02 1.32 16
28 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16
29 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16
30 H 0.05 1.76 7.99 -2.39 -0.02 1.74 16
31 H 0.08 2.33 8.07 -2.39 -0.02 2.31 16
32 H 0.21 5.42 4.44 -2.91 -0.01 5.41 16
33 H 0.43 2.78 9.06 -74.06 -0.67 2.11 16
34 H 0.09 1.54 8.14 -2.38 -0.02 1.53 16
35 H 0.09 2.11 6.34 -2.39 -0.02 2.10 16
36 H 0.12 1.38 8.14 -2.39 -0.02 1.36 16
37 H 0.10 2.33 6.23 -2.39 -0.01 2.32 16
38 H 0.06 2.22 7.49 -2.38 -0.02 2.20 16
39 H 0.38 18.44 6.10 -92.71 -0.57 17.87 16
40 H 0.25 14.32 8.31 -92.71 -0.77 13.55 16
Total: -1.00 -70.71 329.22 -0.98 -71.70
By element:
Atomic # 1 Polarization: 28.97 SS G_CDS: -0.14 Total: 28.83 kcal
Atomic # 6 Polarization: 19.64 SS G_CDS: 7.85 Total: 27.49 kcal
Atomic # 7 Polarization: -134.35 SS G_CDS: -9.50 Total: -143.85 kcal
Atomic # 8 Polarization: -29.31 SS G_CDS: -1.22 Total: -30.52 kcal
Atomic # 14 Polarization: 44.33 SS G_CDS: 2.03 Total: 46.36 kcal
Total: -70.71 -0.98 -71.70 kcal
The number of atoms in the molecule is 40
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001054974533.mol2 40
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 68.578 kcal
(2) G-P(sol) polarization free energy of solvation -70.715 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.137 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.985 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.700 kcal
(6) G-S(sol) free energy of system = (1) + (5) -3.122 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.66 seconds