Wall clock time and date at job start Tue Mar 31 2020 04:29:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46499 * 109.47153 * 2 1 4 4 C 1.34255 * 125.75591 * 125.27324 * 3 2 1 5 5 C 1.38044 * 107.41461 * 180.18347 * 4 3 2 6 6 C 1.47429 * 126.41191 * 179.87071 * 5 4 3 7 7 O 1.21604 * 120.00221 * 359.71048 * 6 5 4 8 8 N 1.34787 * 119.99954 * 179.71105 * 6 5 4 9 9 C 1.46494 * 120.00004 * 179.97438 * 8 6 5 10 10 H 1.09008 * 110.88436 * 37.42922 * 9 8 6 11 11 C 1.54908 * 111.00587 * 273.54798 * 9 8 6 12 12 N 1.47425 * 104.92961 * 204.82382 * 11 9 8 13 13 C 1.36938 * 125.65179 * 204.15650 * 12 11 9 14 14 H 1.08005 * 119.99558 * 359.97438 * 13 12 11 15 15 C 1.38811 * 120.00146 * 180.02562 * 13 12 11 16 16 N 1.31620 * 120.00086 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 119.99779 * 180.02562 * 15 13 12 18 18 H 1.48498 * 109.47268 * 359.97438 * 17 15 13 19 19 H 1.48502 * 109.47204 * 119.99715 * 17 15 13 20 20 H 1.48508 * 109.46889 * 239.99519 * 17 15 13 21 21 C 1.47290 * 108.55742 * 24.15407 * 12 11 9 22 22 C 1.54325 * 107.30599 * 358.92448 * 21 12 11 23 23 H 1.08997 * 110.72163 * 96.18354 * 22 21 12 24 24 O 1.42898 * 110.87178 * 219.38109 * 22 21 12 25 25 C 1.41288 * 107.17326 * 359.60724 * 5 4 3 26 26 N 1.30451 * 108.02386 * 0.24071 * 25 5 4 27 27 H 1.09003 * 109.47428 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.47574 * 300.00172 * 1 2 3 29 29 H 1.09000 * 109.47134 * 60.00366 * 1 2 3 30 30 H 1.09000 * 109.46926 * 239.99727 * 2 1 3 31 31 H 1.09000 * 109.47134 * 119.99634 * 2 1 3 32 32 H 1.08002 * 126.29276 * 0.03086 * 4 3 2 33 33 H 0.96999 * 119.99460 * 0.02562 * 8 6 5 34 34 H 1.09002 * 110.36632 * 323.71778 * 11 9 8 35 35 H 1.08995 * 110.36781 * 85.93015 * 11 9 8 36 36 H 0.96999 * 120.00175 * 180.02562 * 16 15 13 37 37 H 1.09004 * 109.85762 * 239.50064 * 21 12 11 38 38 H 1.08999 * 109.87327 * 118.35916 * 21 12 11 39 39 H 0.96700 * 114.00884 * 293.61196 * 24 22 21 40 40 H 1.08005 * 125.99185 * 180.24181 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.8730 1.9111 0.8895 5 6 3.0700 3.2312 0.5373 6 6 3.9313 4.2038 1.2343 7 8 4.5495 3.8673 2.2260 8 7 4.0336 5.4659 0.7724 9 6 4.8890 6.4324 1.4654 10 1 5.7959 5.9537 1.8350 11 6 4.1206 7.1294 2.6157 12 7 4.8096 8.4187 2.8062 13 6 4.8136 9.1590 3.9582 14 1 4.2787 8.8071 4.8281 15 6 5.5040 10.3622 4.0077 16 7 6.1554 10.7913 2.9476 17 14 5.5100 11.3716 5.5795 18 1 4.7094 10.6750 6.6183 19 1 6.9064 11.5355 6.0574 20 1 4.9183 12.7073 5.3122 21 6 5.4919 8.7756 1.5506 22 6 5.2300 7.6343 0.5454 23 1 4.3869 7.8761 -0.1016 24 8 6.3984 7.3615 -0.2308 25 6 2.2965 3.4742 -0.6198 26 7 1.6763 2.3693 -0.9301 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 3.3218 1.3994 1.7280 33 1 3.5402 5.7343 -0.0184 34 1 3.0808 7.2931 2.3328 35 1 4.1758 6.5318 3.5255 36 1 6.6382 11.6318 2.9823 37 1 6.5629 8.8760 1.7268 38 1 5.0887 9.7111 1.1627 39 1 6.6544 8.0818 -0.8230 40 1 2.2303 4.4106 -1.1539 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001076817378.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:29:35 Heat of formation + Delta-G solvation = 22.874598 kcal Electronic energy + Delta-G solvation = -23312.199079 eV Core-core repulsion = 19743.757302 eV Total energy + Delta-G solvation = -3568.441777 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.148 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.50392 -39.25195 -37.61731 -35.01462 -34.82589 -33.90249 -31.69545 -30.73928 -29.90636 -28.23552 -26.93000 -24.68644 -24.08632 -22.76890 -20.91148 -20.55102 -20.24058 -19.77728 -18.03430 -17.00479 -16.73787 -15.98079 -15.89206 -15.62553 -14.83547 -14.70930 -14.42600 -14.15011 -13.96133 -13.78021 -13.11911 -12.97606 -12.80400 -12.62523 -12.53074 -12.36948 -11.99799 -11.88147 -11.43621 -11.20696 -11.12461 -10.84492 -10.80398 -10.10256 -9.84505 -9.80104 -9.78753 -9.71115 -9.26760 -8.90331 -8.69254 -8.54226 -6.87072 -5.73103 -3.06999 1.44646 2.09337 2.10348 3.40861 3.45716 3.48337 3.51048 3.64504 4.10400 4.47329 4.49301 4.57201 4.64739 4.68082 4.76019 5.05283 5.15364 5.21463 5.25195 5.39383 5.47658 5.59704 5.63055 5.67879 5.73489 5.88608 6.14841 6.20126 6.26105 6.61706 6.62254 6.70650 6.98447 7.34994 7.36562 7.50381 7.75497 7.85814 8.15663 8.20727 8.56779 9.18443 9.78780 10.42502 11.39080 Molecular weight = 294.15amu Principal moments of inertia in cm(-1) A = 0.029352 B = 0.003072 C = 0.002901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 953.693511 B = 9112.378987 C = 9648.457228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.127 3.873 3 N -0.364 5.364 4 C 0.125 3.875 5 C -0.286 4.286 6 C 0.593 3.407 7 O -0.549 6.549 8 N -0.711 5.711 9 C 0.142 3.858 10 H 0.102 0.898 11 C 0.130 3.870 12 N -0.601 5.601 13 C -0.225 4.225 14 H 0.081 0.919 15 C -0.009 4.009 16 N -0.924 5.924 17 Si 0.915 3.085 18 H -0.279 1.279 19 H -0.290 1.290 20 H -0.291 1.291 21 C 0.153 3.847 22 C 0.069 3.931 23 H 0.058 0.942 24 O -0.563 6.563 25 C 0.081 3.919 26 N -0.298 5.298 27 H 0.076 0.924 28 H 0.062 0.938 29 H 0.072 0.928 30 H 0.088 0.912 31 H 0.099 0.901 32 H 0.188 0.812 33 H 0.395 0.605 34 H 0.024 0.976 35 H 0.051 0.949 36 H 0.252 0.748 37 H 0.061 0.939 38 H 0.049 0.951 39 H 0.376 0.624 40 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.245 -18.477 -10.003 22.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.006 3.994 3 N -0.144 5.144 4 C -0.026 4.026 5 C -0.301 4.301 6 C 0.380 3.620 7 O -0.427 6.427 8 N -0.361 5.361 9 C 0.037 3.963 10 H 0.120 0.880 11 C 0.002 3.998 12 N -0.329 5.329 13 C -0.353 4.353 14 H 0.099 0.901 15 C -0.205 4.205 16 N -0.572 5.572 17 Si 0.745 3.255 18 H -0.204 1.204 19 H -0.217 1.217 20 H -0.218 1.218 21 C 0.028 3.972 22 C 0.009 3.991 23 H 0.075 0.925 24 O -0.368 6.368 25 C -0.107 4.107 26 N -0.118 5.118 27 H 0.095 0.905 28 H 0.081 0.919 29 H 0.091 0.909 30 H 0.106 0.894 31 H 0.118 0.882 32 H 0.204 0.796 33 H 0.229 0.771 34 H 0.041 0.959 35 H 0.069 0.931 36 H 0.063 0.937 37 H 0.079 0.921 38 H 0.067 0.933 39 H 0.223 0.777 40 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges -9.602 -19.802 -9.702 24.051 hybrid contribution 0.364 1.707 0.626 1.854 sum -9.237 -18.096 -9.076 22.252 Atomic orbital electron populations 1.22058 0.93442 1.03040 1.03836 1.21807 0.96400 0.76991 1.04207 1.48615 1.34358 1.10577 1.20801 1.22988 0.91584 0.93675 0.94389 1.20339 1.11212 0.95373 1.03203 1.17199 0.80304 0.81235 0.83242 1.90782 1.46836 1.78844 1.26234 1.45674 1.48577 1.10475 1.31339 1.22208 0.94083 0.87590 0.92428 0.87979 1.21854 0.94348 0.87780 0.95771 1.44321 1.58730 1.19507 1.10303 1.19143 1.26969 1.00011 0.89192 0.90086 1.24813 0.99832 0.98016 0.97863 1.69930 1.37359 1.22234 1.27715 0.85997 0.77330 0.79897 0.82270 1.20426 1.21692 1.21768 1.21856 0.98757 0.92416 0.84197 1.23444 0.86842 0.96279 0.92575 0.92456 1.86471 1.46586 1.45141 1.58579 1.24080 0.94114 0.97414 0.95056 1.77110 1.24036 0.97144 1.13494 0.90526 0.91877 0.90942 0.89384 0.88248 0.79552 0.77106 0.95870 0.93090 0.93744 0.92111 0.93316 0.77716 0.79393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.90 10.09 37.16 0.37 -0.52 16 2 C 0.13 0.72 7.21 -4.04 -0.03 0.69 16 3 N -0.36 -3.56 3.65 -60.81 -0.22 -3.78 16 4 C 0.12 1.36 11.25 -16.56 -0.19 1.18 16 5 C -0.29 -3.71 6.13 -105.07 -0.64 -4.35 16 6 C 0.59 9.66 7.81 -12.51 -0.10 9.56 16 7 O -0.55 -11.01 16.64 5.27 0.09 -10.92 16 8 N -0.71 -11.00 5.22 -52.80 -0.28 -11.28 16 9 C 0.14 2.74 3.04 -65.79 -0.20 2.54 16 10 H 0.10 2.26 7.73 -51.92 -0.40 1.86 16 11 C 0.13 2.85 6.92 -2.53 -0.02 2.83 16 12 N -0.60 -15.60 3.40 -169.85 -0.58 -16.17 16 13 C -0.23 -6.36 10.28 -15.06 -0.15 -6.52 16 14 H 0.08 2.23 7.83 -52.48 -0.41 1.82 16 15 C -0.01 -0.26 5.49 -17.43 -0.10 -0.36 16 16 N -0.92 -27.02 10.34 55.49 0.57 -26.44 16 17 Si 0.91 22.29 29.55 -169.99 -5.02 17.27 16 18 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 19 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 20 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 21 C 0.15 3.66 5.16 -2.92 -0.02 3.65 16 22 C 0.07 1.27 3.95 -24.90 -0.10 1.18 16 23 H 0.06 0.92 8.00 -51.93 -0.42 0.51 16 24 O -0.56 -9.77 13.40 -35.23 -0.47 -10.25 16 25 C 0.08 0.90 11.50 -16.98 -0.20 0.71 16 26 N -0.30 -3.43 12.33 30.86 0.38 -3.05 16 27 H 0.08 0.25 8.14 -51.93 -0.42 -0.18 16 28 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 30 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.10 0.33 8.06 -51.93 -0.42 -0.09 16 32 H 0.19 1.65 8.06 -52.49 -0.42 1.23 16 33 H 0.40 4.83 7.47 -40.82 -0.30 4.53 16 34 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.05 1.17 8.14 -51.93 -0.42 0.75 16 36 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 37 H 0.06 1.64 7.31 -51.93 -0.38 1.26 16 38 H 0.05 1.25 7.52 -51.93 -0.39 0.86 16 39 H 0.38 4.93 9.12 45.56 0.42 5.34 16 40 H 0.19 1.52 7.50 -52.48 -0.39 1.13 16 LS Contribution 340.43 15.07 5.13 5.13 Total: -1.00 -36.05 340.43 -6.55 -42.60 By element: Atomic # 1 Polarization: 11.10 SS G_CDS: -4.79 Total: 6.31 kcal Atomic # 6 Polarization: 11.94 SS G_CDS: -1.36 Total: 10.58 kcal Atomic # 7 Polarization: -60.60 SS G_CDS: -0.12 Total: -60.72 kcal Atomic # 8 Polarization: -20.78 SS G_CDS: -0.38 Total: -21.16 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -5.02 Total: 17.27 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -36.05 -6.55 -42.60 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001076817378.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.476 kcal (2) G-P(sol) polarization free energy of solvation -36.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.601 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds