Wall clock time and date at job start Tue Mar 31 2020 04:29:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46499 * 109.47153 * 2 1 4 4 C 1.34255 * 125.75591 * 125.27324 * 3 2 1 5 5 C 1.38044 * 107.41461 * 180.18347 * 4 3 2 6 6 C 1.47429 * 126.41191 * 179.87071 * 5 4 3 7 7 O 1.21604 * 120.00221 * 359.71048 * 6 5 4 8 8 N 1.34787 * 119.99954 * 179.71105 * 6 5 4 9 9 C 1.46494 * 120.00004 * 179.97438 * 8 6 5 10 10 H 1.09008 * 110.88436 * 37.42922 * 9 8 6 11 11 C 1.54908 * 111.00587 * 273.54798 * 9 8 6 12 12 N 1.47425 * 104.92961 * 204.82382 * 11 9 8 13 13 C 1.36938 * 125.65179 * 204.15650 * 12 11 9 14 14 H 1.08005 * 119.99558 * 359.97438 * 13 12 11 15 15 C 1.38811 * 120.00146 * 180.02562 * 13 12 11 16 16 N 1.31620 * 120.00086 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 119.99779 * 180.02562 * 15 13 12 18 18 H 1.48498 * 109.47268 * 359.97438 * 17 15 13 19 19 H 1.48502 * 109.47204 * 119.99715 * 17 15 13 20 20 H 1.48508 * 109.46889 * 239.99519 * 17 15 13 21 21 C 1.47290 * 108.55742 * 24.15407 * 12 11 9 22 22 C 1.54325 * 107.30599 * 358.92448 * 21 12 11 23 23 H 1.08997 * 110.72163 * 96.18354 * 22 21 12 24 24 O 1.42898 * 110.87178 * 219.38109 * 22 21 12 25 25 C 1.41288 * 107.17326 * 359.60724 * 5 4 3 26 26 N 1.30451 * 108.02386 * 0.24071 * 25 5 4 27 27 H 1.09003 * 109.47428 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.47574 * 300.00172 * 1 2 3 29 29 H 1.09000 * 109.47134 * 60.00366 * 1 2 3 30 30 H 1.09000 * 109.46926 * 239.99727 * 2 1 3 31 31 H 1.09000 * 109.47134 * 119.99634 * 2 1 3 32 32 H 1.08002 * 126.29276 * 0.03086 * 4 3 2 33 33 H 0.96999 * 119.99460 * 0.02562 * 8 6 5 34 34 H 1.09002 * 110.36632 * 323.71778 * 11 9 8 35 35 H 1.08995 * 110.36781 * 85.93015 * 11 9 8 36 36 H 0.96999 * 120.00175 * 180.02562 * 16 15 13 37 37 H 1.09004 * 109.85762 * 239.50064 * 21 12 11 38 38 H 1.08999 * 109.87327 * 118.35916 * 21 12 11 39 39 H 0.96700 * 114.00884 * 293.61196 * 24 22 21 40 40 H 1.08005 * 125.99185 * 180.24181 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.8730 1.9111 0.8895 5 6 3.0700 3.2312 0.5373 6 6 3.9313 4.2038 1.2343 7 8 4.5495 3.8673 2.2260 8 7 4.0336 5.4659 0.7724 9 6 4.8890 6.4324 1.4654 10 1 5.7959 5.9537 1.8350 11 6 4.1206 7.1294 2.6157 12 7 4.8096 8.4187 2.8062 13 6 4.8136 9.1590 3.9582 14 1 4.2787 8.8071 4.8281 15 6 5.5040 10.3622 4.0077 16 7 6.1554 10.7913 2.9476 17 14 5.5100 11.3716 5.5795 18 1 4.7094 10.6750 6.6183 19 1 6.9064 11.5355 6.0574 20 1 4.9183 12.7073 5.3122 21 6 5.4919 8.7756 1.5506 22 6 5.2300 7.6343 0.5454 23 1 4.3869 7.8761 -0.1016 24 8 6.3984 7.3615 -0.2308 25 6 2.2965 3.4742 -0.6198 26 7 1.6763 2.3693 -0.9301 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 3.3218 1.3994 1.7280 33 1 3.5402 5.7343 -0.0184 34 1 3.0808 7.2931 2.3328 35 1 4.1758 6.5318 3.5255 36 1 6.6382 11.6318 2.9823 37 1 6.5629 8.8760 1.7268 38 1 5.0887 9.7111 1.1627 39 1 6.6544 8.0818 -0.8230 40 1 2.2303 4.4106 -1.1539 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001076817378.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:29:34 Heat of formation + Delta-G solvation = -6.367696 kcal Electronic energy + Delta-G solvation = -23313.467120 eV Core-core repulsion = 19743.757302 eV Total energy + Delta-G solvation = -3569.709818 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.148 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.35765 -40.66602 -39.15911 -36.64612 -35.60783 -35.31181 -33.59241 -31.55144 -30.93819 -29.89979 -28.61938 -26.43574 -24.87606 -23.89564 -22.33661 -21.94753 -21.48908 -21.00009 -19.22006 -18.74276 -18.19998 -17.30800 -16.96958 -16.59812 -16.49032 -15.91434 -15.63802 -15.53807 -15.30216 -14.72854 -14.58838 -14.44412 -14.17583 -13.81386 -13.69382 -13.37715 -13.14467 -13.10088 -12.95891 -12.75416 -12.71686 -12.45690 -12.04427 -11.90911 -11.86832 -11.49799 -11.08473 -10.79689 -10.76011 -10.56569 -10.18388 -9.64194 -8.95186 -7.87876 -5.24677 0.54954 1.18295 1.40771 1.46533 1.47886 1.58324 2.20254 2.47147 2.50959 3.15567 3.33046 3.46812 3.57374 3.80781 3.88562 4.03530 4.08023 4.09746 4.12193 4.22941 4.37362 4.43562 4.47977 4.60319 4.73457 4.82034 4.86581 4.90510 5.07664 5.23006 5.38076 5.43525 5.45874 5.53183 5.67736 5.90166 6.14629 6.50546 6.67545 6.90340 7.05804 7.33262 7.70185 8.33362 9.22397 Molecular weight = 294.15amu Principal moments of inertia in cm(-1) A = 0.029352 B = 0.003072 C = 0.002901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 953.693511 B = 9112.378987 C = 9648.457228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.115 3.885 3 N -0.357 5.357 4 C 0.132 3.868 5 C -0.313 4.313 6 C 0.594 3.406 7 O -0.594 6.594 8 N -0.698 5.698 9 C 0.157 3.843 10 H 0.070 0.930 11 C 0.131 3.869 12 N -0.623 5.623 13 C -0.245 4.245 14 H 0.081 0.919 15 C -0.063 4.063 16 N -0.949 5.949 17 Si 0.981 3.019 18 H -0.268 1.268 19 H -0.292 1.292 20 H -0.287 1.287 21 C 0.161 3.839 22 C 0.092 3.908 23 H 0.097 0.903 24 O -0.568 6.568 25 C 0.087 3.913 26 N -0.317 5.317 27 H 0.102 0.898 28 H 0.051 0.949 29 H 0.054 0.946 30 H 0.101 0.899 31 H 0.128 0.872 32 H 0.205 0.795 33 H 0.414 0.586 34 H 0.041 0.959 35 H 0.032 0.968 36 H 0.249 0.751 37 H 0.021 0.979 38 H 0.027 0.973 39 H 0.396 0.604 40 H 0.215 0.785 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.609 -19.901 -10.965 25.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.004 4.004 3 N -0.136 5.136 4 C -0.021 4.021 5 C -0.329 4.329 6 C 0.383 3.617 7 O -0.476 6.476 8 N -0.348 5.348 9 C 0.050 3.950 10 H 0.088 0.912 11 C 0.005 3.995 12 N -0.351 5.351 13 C -0.374 4.374 14 H 0.098 0.902 15 C -0.256 4.256 16 N -0.597 5.597 17 Si 0.809 3.191 18 H -0.192 1.192 19 H -0.219 1.219 20 H -0.214 1.214 21 C 0.035 3.965 22 C 0.032 3.968 23 H 0.114 0.886 24 O -0.376 6.376 25 C -0.101 4.101 26 N -0.137 5.137 27 H 0.120 0.880 28 H 0.070 0.930 29 H 0.074 0.926 30 H 0.120 0.880 31 H 0.146 0.854 32 H 0.222 0.778 33 H 0.252 0.748 34 H 0.059 0.941 35 H 0.051 0.949 36 H 0.059 0.941 37 H 0.039 0.961 38 H 0.046 0.954 39 H 0.247 0.753 40 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges -11.013 -21.258 -10.730 26.236 hybrid contribution 0.765 2.031 0.908 2.353 sum -10.248 -19.226 -9.822 23.899 Atomic orbital electron populations 1.22023 0.93179 1.04277 1.02385 1.22253 0.96622 0.75171 1.06317 1.48981 1.33336 1.11535 1.19710 1.23301 0.90963 0.93271 0.94539 1.20124 1.12521 0.95607 1.04603 1.17657 0.79856 0.81527 0.82637 1.90757 1.48848 1.79596 1.28385 1.45410 1.48093 1.09729 1.31615 1.21683 0.93064 0.88109 0.92118 0.91199 1.21924 0.95153 0.86222 0.96233 1.44597 1.59273 1.20727 1.10463 1.19477 1.27036 1.00627 0.90252 0.90152 1.25654 0.99754 0.99146 1.01038 1.70130 1.37875 1.22328 1.29400 0.84976 0.77072 0.78224 0.78834 1.19240 1.21896 1.21381 1.21676 0.95993 0.93937 0.84902 1.23129 0.88477 0.93329 0.91863 0.88560 1.86437 1.46267 1.46219 1.58673 1.24461 0.92996 0.98335 0.94290 1.77093 1.24575 0.97644 1.14374 0.87978 0.92975 0.92639 0.88049 0.85427 0.77835 0.74816 0.94134 0.94933 0.94138 0.96092 0.95436 0.75340 0.76891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.37 10.09 71.98 0.73 -0.65 16 2 C 0.12 0.99 7.21 86.38 0.62 1.61 16 3 N -0.36 -6.16 3.65 -346.31 -1.26 -7.43 16 4 C 0.13 2.65 11.25 84.28 0.95 3.59 16 5 C -0.31 -7.64 6.13 -20.15 -0.12 -7.77 16 6 C 0.59 18.93 7.81 86.66 0.68 19.61 16 7 O -0.59 -24.12 16.64 -4.04 -0.07 -24.19 16 8 N -0.70 -20.64 5.22 -439.21 -2.29 -22.93 16 9 C 0.16 6.02 3.04 46.38 0.14 6.16 16 10 H 0.07 3.17 7.73 -2.38 -0.02 3.15 16 11 C 0.13 5.80 6.92 86.85 0.60 6.40 16 12 N -0.62 -33.01 3.40 -691.30 -2.35 -35.37 16 13 C -0.25 -14.15 10.28 84.03 0.86 -13.29 16 14 H 0.08 4.50 7.83 -2.91 -0.02 4.48 16 15 C -0.06 -3.61 5.49 84.86 0.47 -3.15 16 16 N -0.95 -56.76 10.34 21.65 0.22 -56.54 16 17 Si 0.98 46.37 29.55 68.60 2.03 48.40 16 18 H -0.27 -12.04 7.11 99.48 0.71 -11.34 16 19 H -0.29 -13.81 7.11 99.48 0.71 -13.10 16 20 H -0.29 -13.33 7.11 99.48 0.71 -12.62 16 21 C 0.16 7.83 5.16 86.68 0.45 8.27 16 22 C 0.09 3.32 3.95 31.78 0.13 3.45 16 23 H 0.10 2.79 8.00 -2.39 -0.02 2.77 16 24 O -0.57 -18.92 13.40 -148.98 -2.00 -20.92 16 25 C 0.09 1.73 11.50 85.65 0.99 2.72 16 26 N -0.32 -6.63 12.33 -56.27 -0.69 -7.32 16 27 H 0.10 0.35 8.14 -2.39 -0.02 0.33 16 28 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 29 H 0.05 0.67 8.14 -2.39 -0.02 0.66 16 30 H 0.10 0.66 8.14 -2.39 -0.02 0.64 16 31 H 0.13 0.40 8.06 -2.39 -0.02 0.38 16 32 H 0.20 3.21 8.06 -2.91 -0.02 3.19 16 33 H 0.41 9.01 7.47 -92.71 -0.69 8.32 16 34 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 35 H 0.03 1.53 8.14 -2.39 -0.02 1.52 16 36 H 0.25 14.41 8.31 -92.71 -0.77 13.64 16 37 H 0.02 1.17 7.31 -2.38 -0.02 1.15 16 38 H 0.03 1.44 7.52 -2.39 -0.02 1.42 16 39 H 0.40 9.66 9.12 -74.06 -0.68 8.99 16 40 H 0.21 2.81 7.50 -2.91 -0.02 2.79 16 Total: -1.00 -80.54 340.43 -0.23 -80.77 By element: Atomic # 1 Polarization: 18.84 SS G_CDS: -0.29 Total: 18.55 kcal Atomic # 6 Polarization: 20.49 SS G_CDS: 6.48 Total: 26.97 kcal Atomic # 7 Polarization: -123.21 SS G_CDS: -6.38 Total: -129.59 kcal Atomic # 8 Polarization: -43.04 SS G_CDS: -2.06 Total: -45.10 kcal Atomic # 14 Polarization: 46.37 SS G_CDS: 2.03 Total: 48.40 kcal Total: -80.54 -0.23 -80.77 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001076817378.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.407 kcal (2) G-P(sol) polarization free energy of solvation -80.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.774 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds