Wall clock time and date at job start Tue Mar 31 2020 03:10:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50701 * 109.47508 * 2 1 4 4 N 1.33316 * 126.10754 * 270.13069 * 3 2 1 5 5 C 1.30851 * 109.68691 * 180.26863 * 4 3 2 6 6 N 1.34497 * 109.16392 * 359.76134 * 5 4 3 7 7 H 0.96999 * 126.47634 * 179.97438 * 6 5 4 8 8 C 1.36666 * 126.10743 * 89.99566 * 3 2 1 9 9 C 1.46761 * 126.84382 * 0.02562 * 8 3 2 10 10 O 1.21681 * 120.00157 * 359.70082 * 9 8 3 11 11 N 1.34778 * 119.99916 * 179.70810 * 9 8 3 12 12 C 1.46502 * 119.99724 * 179.97438 * 11 9 8 13 13 H 1.08997 * 110.92304 * 31.09424 * 12 11 9 14 14 C 1.54909 * 111.00219 * 267.19171 * 12 11 9 15 15 N 1.47426 * 104.83381 * 204.91950 * 14 12 11 16 16 C 1.36939 * 125.64917 * 204.16150 * 15 14 12 17 17 H 1.08001 * 119.99881 * 359.97438 * 16 15 14 18 18 C 1.38813 * 119.99940 * 179.97438 * 16 15 14 19 19 N 1.31615 * 120.00066 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 120.00060 * 180.02562 * 18 16 15 21 21 H 1.48495 * 109.46743 * 59.99931 * 20 18 16 22 22 H 1.48495 * 109.47245 * 180.02562 * 20 18 16 23 23 H 1.48506 * 109.46854 * 300.00070 * 20 18 16 24 24 C 1.47018 * 108.70104 * 24.12870 * 15 14 12 25 25 C 1.54322 * 107.27336 * 358.94171 * 24 15 14 26 26 H 1.09002 * 110.71963 * 96.17078 * 25 24 15 27 27 O 1.42901 * 110.71944 * 219.26540 * 25 24 15 28 28 H 1.08993 * 109.47232 * 180.02562 * 1 2 3 29 29 H 1.09007 * 109.46925 * 300.00149 * 1 2 3 30 30 H 1.08994 * 109.47290 * 59.99501 * 1 2 3 31 31 H 1.08996 * 109.46931 * 240.00337 * 2 1 3 32 32 H 1.09004 * 109.47342 * 119.99937 * 2 1 3 33 33 H 1.08003 * 125.42402 * 179.77872 * 5 4 3 34 34 H 0.96998 * 120.00151 * 359.97438 * 11 9 8 35 35 H 1.08998 * 110.36917 * 86.07661 * 14 12 11 36 36 H 1.09009 * 110.46209 * 323.80298 * 14 12 11 37 37 H 0.96994 * 120.00360 * 180.02562 * 19 18 16 38 38 H 1.08998 * 109.88222 * 239.52595 * 24 15 14 39 39 H 1.09005 * 110.01447 * 118.43174 * 24 15 14 40 40 H 0.96689 * 114.00373 * 296.15847 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2920 2.1623 -1.0771 5 6 2.7167 3.3434 -0.7072 6 7 2.7398 3.4035 0.6362 7 1 3.0134 4.1624 1.1749 8 6 2.3008 2.1801 1.1041 9 6 2.1578 1.7743 2.5073 10 8 1.7577 0.6580 2.7800 11 7 2.4694 2.6382 3.4937 12 6 2.3261 2.2332 4.8943 13 1 2.5008 1.1636 5.0101 14 6 0.9352 2.6317 5.4479 15 7 1.1280 2.7481 6.9049 16 6 0.1478 2.6199 7.8524 17 1 -0.8696 2.4161 7.5528 18 6 0.4618 2.7520 9.1981 19 7 1.7015 3.0009 9.5633 20 14 -0.8753 2.5764 10.4908 21 1 -1.4819 1.2245 10.3949 22 1 -0.2854 2.7603 11.8411 23 1 -1.9214 3.6057 10.2638 24 6 2.5472 3.0238 7.1720 25 6 3.2724 3.0537 5.8101 26 1 3.3690 4.0769 5.4470 27 8 4.5546 2.4302 5.9063 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 3.0029 4.1430 -1.3745 34 1 2.7886 3.5280 3.2763 35 1 0.2014 1.8577 5.2230 36 1 0.6180 3.5871 5.0297 37 1 1.9211 3.0928 10.5036 38 1 2.9664 2.2361 7.7979 39 1 2.6528 3.9880 7.6694 40 1 5.1694 2.8842 6.4986 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001078089702.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:10:10 Heat of formation + Delta-G solvation = -2.624308 kcal Electronic energy + Delta-G solvation = -23848.273701 eV Core-core repulsion = 20278.726209 eV Total energy + Delta-G solvation = -3569.547492 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.148 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.38913 -39.49070 -37.82100 -35.17200 -34.69793 -33.78478 -32.27278 -31.62454 -29.38832 -28.30796 -27.08037 -24.75950 -23.88103 -22.83992 -21.49999 -20.66511 -20.29550 -19.62733 -18.81292 -17.13950 -16.88875 -16.13382 -15.83939 -15.67167 -15.02933 -14.63914 -14.28668 -14.13432 -14.04175 -13.89513 -13.45598 -13.24898 -12.75714 -12.52932 -12.36447 -12.15219 -11.61256 -11.45603 -11.31526 -10.98227 -10.93770 -10.82919 -10.51002 -10.23710 -10.19840 -10.00082 -9.89211 -9.86730 -9.41546 -9.02051 -8.71279 -8.58686 -6.97551 -5.81132 -3.16029 1.19177 2.68551 2.70846 3.14607 3.32111 3.37426 3.41636 3.42833 4.24880 4.38788 4.53773 4.67927 4.86811 5.01675 5.12403 5.37207 5.46350 5.49474 5.50921 5.54898 5.58341 5.65701 5.73120 5.98871 6.01558 6.04506 6.22403 6.29281 6.38241 6.48130 6.53940 6.76854 6.99004 7.24797 7.39596 7.47946 7.67556 7.76421 8.03288 8.11538 8.22289 9.09928 9.69981 10.32335 11.30639 Molecular weight = 294.15amu Principal moments of inertia in cm(-1) A = 0.023551 B = 0.003657 C = 0.003371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1188.626429 B = 7655.122056 C = 8305.058346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.049 4.049 3 C 0.098 3.902 4 N -0.498 5.498 5 C 0.214 3.786 6 N -0.556 5.556 7 H 0.422 0.578 8 C -0.085 4.085 9 C 0.593 3.407 10 O -0.516 6.516 11 N -0.714 5.714 12 C 0.139 3.861 13 H 0.109 0.891 14 C 0.131 3.869 15 N -0.599 5.599 16 C -0.231 4.231 17 H 0.081 0.919 18 C -0.006 4.006 19 N -0.924 5.924 20 Si 0.916 3.084 21 H -0.283 1.283 22 H -0.289 1.289 23 H -0.284 1.284 24 C 0.153 3.847 25 C 0.068 3.932 26 H 0.055 0.945 27 O -0.563 6.563 28 H 0.059 0.941 29 H 0.057 0.943 30 H 0.051 0.949 31 H 0.074 0.926 32 H 0.095 0.905 33 H 0.214 0.786 34 H 0.389 0.611 35 H 0.052 0.948 36 H 0.022 0.978 37 H 0.254 0.746 38 H 0.062 0.938 39 H 0.049 0.951 40 H 0.377 0.623 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.875 3.569 -17.514 18.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.088 4.088 3 C -0.036 4.036 4 N -0.218 5.218 5 C -0.070 4.070 6 N -0.161 5.161 7 H 0.261 0.739 8 C -0.200 4.200 9 C 0.379 3.621 10 O -0.391 6.391 11 N -0.364 5.364 12 C 0.034 3.966 13 H 0.127 0.873 14 C 0.003 3.997 15 N -0.327 5.327 16 C -0.359 4.359 17 H 0.099 0.901 18 C -0.202 4.202 19 N -0.572 5.572 20 Si 0.746 3.254 21 H -0.210 1.210 22 H -0.215 1.215 23 H -0.211 1.211 24 C 0.028 3.972 25 C 0.008 3.992 26 H 0.073 0.927 27 O -0.368 6.368 28 H 0.078 0.922 29 H 0.076 0.924 30 H 0.070 0.930 31 H 0.092 0.908 32 H 0.113 0.887 33 H 0.231 0.769 34 H 0.222 0.778 35 H 0.070 0.930 36 H 0.040 0.960 37 H 0.064 0.936 38 H 0.080 0.920 39 H 0.067 0.933 40 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges 4.189 2.049 -18.256 18.842 hybrid contribution 0.116 1.823 2.048 2.744 sum 4.305 3.872 -16.208 17.211 Atomic orbital electron populations 1.21614 0.94332 1.01826 1.01795 1.20068 0.96301 0.88694 1.03693 1.21052 0.98921 0.97042 0.86553 1.70116 1.18456 1.02709 1.30536 1.25107 1.01780 0.98035 0.82052 1.43344 1.50355 1.13553 1.08821 0.73945 1.21061 1.15493 0.88206 0.95290 1.16805 0.77882 0.85019 0.82407 1.90843 1.45871 1.19761 1.82636 1.45814 1.67656 1.16281 1.06605 1.22318 0.95868 1.01114 0.77253 0.87271 1.21841 0.93649 0.98149 0.86064 1.44224 1.04820 1.84311 0.99325 1.19051 0.88728 1.42401 0.85745 0.90133 1.24812 0.96800 1.01615 0.96976 1.69899 1.16589 1.55042 1.15640 0.86138 0.80525 0.78089 0.80658 1.20954 1.21523 1.21091 1.21832 0.83920 1.01536 0.89936 1.23456 0.83492 0.93784 0.98454 0.92718 1.86463 1.24145 1.56553 1.69648 0.92166 0.92408 0.93035 0.90762 0.88660 0.76935 0.77755 0.92983 0.96007 0.93552 0.92008 0.93278 0.77570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.66 9.89 37.16 0.37 -1.30 16 2 C -0.05 -0.63 5.93 -27.88 -0.17 -0.80 16 3 C 0.10 1.33 6.40 -82.52 -0.53 0.80 16 4 N -0.50 -6.15 11.20 -10.64 -0.12 -6.27 16 5 C 0.21 1.82 13.01 -90.58 -1.18 0.64 16 6 N -0.56 -4.76 6.07 -10.79 -0.07 -4.83 16 7 H 0.42 2.17 8.32 -40.82 -0.34 1.83 16 8 C -0.08 -1.09 7.08 -82.14 -0.58 -1.67 16 9 C 0.59 9.15 7.79 -12.82 -0.10 9.05 16 10 O -0.52 -9.66 14.46 5.21 0.08 -9.59 16 11 N -0.71 -10.17 5.19 -53.01 -0.28 -10.45 16 12 C 0.14 2.54 3.15 -65.78 -0.21 2.33 16 13 H 0.11 2.30 7.54 -51.93 -0.39 1.91 16 14 C 0.13 2.71 6.93 -2.53 -0.02 2.69 16 15 N -0.60 -15.01 3.39 -170.07 -0.58 -15.59 16 16 C -0.23 -6.37 10.28 -15.06 -0.15 -6.53 16 17 H 0.08 2.15 7.83 -52.49 -0.41 1.74 16 18 C -0.01 -0.16 5.49 -17.43 -0.10 -0.26 16 19 N -0.92 -26.36 10.31 55.49 0.57 -25.79 16 20 Si 0.92 21.81 29.55 -169.99 -5.02 16.79 16 21 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 22 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 23 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 24 C 0.15 3.54 5.15 -3.07 -0.02 3.52 16 25 C 0.07 1.21 3.97 -24.90 -0.10 1.11 16 26 H 0.05 0.83 8.00 -51.93 -0.42 0.42 16 27 O -0.56 -9.40 13.39 -35.23 -0.47 -9.88 16 28 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 29 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 32 H 0.10 1.36 6.49 -51.93 -0.34 1.02 16 33 H 0.21 0.78 8.06 -52.48 -0.42 0.35 16 34 H 0.39 4.21 7.81 -40.82 -0.32 3.89 16 35 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 36 H 0.02 0.44 8.14 -51.92 -0.42 0.01 16 37 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 38 H 0.06 1.62 7.30 -51.93 -0.38 1.24 16 39 H 0.05 1.22 7.51 -51.93 -0.39 0.83 16 40 H 0.38 4.76 9.12 45.56 0.42 5.17 16 LS Contribution 335.08 15.07 5.05 5.05 Total: -1.00 -34.74 335.08 -8.27 -43.01 By element: Atomic # 1 Polarization: 12.61 SS G_CDS: -4.66 Total: 7.95 kcal Atomic # 6 Polarization: 12.36 SS G_CDS: -2.77 Total: 9.59 kcal Atomic # 7 Polarization: -62.46 SS G_CDS: -0.47 Total: -62.92 kcal Atomic # 8 Polarization: -19.07 SS G_CDS: -0.40 Total: -19.46 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -34.74 -8.27 -43.01 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078089702.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.383 kcal (2) G-P(sol) polarization free energy of solvation -34.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.007 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds