Wall clock time and date at job start Tue Mar 31 2020 03:10:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50701 * 109.47508 * 2 1 4 4 N 1.33316 * 126.10754 * 270.13069 * 3 2 1 5 5 C 1.30851 * 109.68691 * 180.26863 * 4 3 2 6 6 N 1.34497 * 109.16392 * 359.76134 * 5 4 3 7 7 H 0.96999 * 126.47634 * 179.97438 * 6 5 4 8 8 C 1.36666 * 126.10743 * 89.99566 * 3 2 1 9 9 C 1.46761 * 126.84382 * 0.02562 * 8 3 2 10 10 O 1.21681 * 120.00157 * 359.70082 * 9 8 3 11 11 N 1.34778 * 119.99916 * 179.70810 * 9 8 3 12 12 C 1.46502 * 119.99724 * 179.97438 * 11 9 8 13 13 H 1.08997 * 110.92304 * 31.09424 * 12 11 9 14 14 C 1.54909 * 111.00219 * 267.19171 * 12 11 9 15 15 N 1.47426 * 104.83381 * 204.91950 * 14 12 11 16 16 C 1.36939 * 125.64917 * 204.16150 * 15 14 12 17 17 H 1.08001 * 119.99881 * 359.97438 * 16 15 14 18 18 C 1.38813 * 119.99940 * 179.97438 * 16 15 14 19 19 N 1.31615 * 120.00066 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 120.00060 * 180.02562 * 18 16 15 21 21 H 1.48495 * 109.46743 * 59.99931 * 20 18 16 22 22 H 1.48495 * 109.47245 * 180.02562 * 20 18 16 23 23 H 1.48506 * 109.46854 * 300.00070 * 20 18 16 24 24 C 1.47018 * 108.70104 * 24.12870 * 15 14 12 25 25 C 1.54322 * 107.27336 * 358.94171 * 24 15 14 26 26 H 1.09002 * 110.71963 * 96.17078 * 25 24 15 27 27 O 1.42901 * 110.71944 * 219.26540 * 25 24 15 28 28 H 1.08993 * 109.47232 * 180.02562 * 1 2 3 29 29 H 1.09007 * 109.46925 * 300.00149 * 1 2 3 30 30 H 1.08994 * 109.47290 * 59.99501 * 1 2 3 31 31 H 1.08996 * 109.46931 * 240.00337 * 2 1 3 32 32 H 1.09004 * 109.47342 * 119.99937 * 2 1 3 33 33 H 1.08003 * 125.42402 * 179.77872 * 5 4 3 34 34 H 0.96998 * 120.00151 * 359.97438 * 11 9 8 35 35 H 1.08998 * 110.36917 * 86.07661 * 14 12 11 36 36 H 1.09009 * 110.46209 * 323.80298 * 14 12 11 37 37 H 0.96994 * 120.00360 * 180.02562 * 19 18 16 38 38 H 1.08998 * 109.88222 * 239.52595 * 24 15 14 39 39 H 1.09005 * 110.01447 * 118.43174 * 24 15 14 40 40 H 0.96689 * 114.00373 * 296.15847 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2920 2.1623 -1.0771 5 6 2.7167 3.3434 -0.7072 6 7 2.7398 3.4035 0.6362 7 1 3.0134 4.1624 1.1749 8 6 2.3008 2.1801 1.1041 9 6 2.1578 1.7743 2.5073 10 8 1.7577 0.6580 2.7800 11 7 2.4694 2.6382 3.4937 12 6 2.3261 2.2332 4.8943 13 1 2.5008 1.1636 5.0101 14 6 0.9352 2.6317 5.4479 15 7 1.1280 2.7481 6.9049 16 6 0.1478 2.6199 7.8524 17 1 -0.8696 2.4161 7.5528 18 6 0.4618 2.7520 9.1981 19 7 1.7015 3.0009 9.5633 20 14 -0.8753 2.5764 10.4908 21 1 -1.4819 1.2245 10.3949 22 1 -0.2854 2.7603 11.8411 23 1 -1.9214 3.6057 10.2638 24 6 2.5472 3.0238 7.1720 25 6 3.2724 3.0537 5.8101 26 1 3.3690 4.0769 5.4470 27 8 4.5546 2.4302 5.9063 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 3.0029 4.1430 -1.3745 34 1 2.7886 3.5280 3.2763 35 1 0.2014 1.8577 5.2230 36 1 0.6180 3.5871 5.0297 37 1 1.9211 3.0928 10.5036 38 1 2.9664 2.2361 7.7979 39 1 2.6528 3.9880 7.6694 40 1 5.1694 2.8842 6.4986 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001078089702.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:10:09 Heat of formation + Delta-G solvation = -30.551571 kcal Electronic energy + Delta-G solvation = -23849.484718 eV Core-core repulsion = 20278.726209 eV Total energy + Delta-G solvation = -3570.758509 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.148 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -43.23624 -40.83742 -39.30712 -36.71015 -35.94402 -34.97794 -33.73920 -32.92625 -30.63251 -29.82274 -28.70054 -26.49916 -25.04661 -23.76779 -22.64968 -22.30576 -21.77665 -20.67849 -19.77897 -19.01224 -18.28437 -17.39671 -17.17940 -16.67364 -16.55714 -15.89357 -15.75099 -15.49342 -15.34373 -14.88911 -14.74271 -14.49415 -14.33902 -14.24463 -13.81214 -13.30416 -13.20727 -13.17491 -12.80018 -12.71034 -12.40633 -12.14897 -11.99329 -11.90468 -11.58635 -11.52076 -11.09380 -11.01434 -10.84206 -10.78035 -10.32714 -9.53858 -8.99162 -7.90539 -5.27821 0.24696 1.45452 1.48713 1.54679 1.80101 1.86466 2.07797 2.22201 2.46926 3.08001 3.30404 3.50509 3.51022 3.70633 3.85779 4.01235 4.05512 4.16892 4.22540 4.40312 4.49359 4.50023 4.55717 4.67433 4.76228 4.79543 4.92377 5.08167 5.23921 5.29868 5.34115 5.36805 5.42099 5.52730 5.64228 6.11505 6.31315 6.43334 6.82988 6.93213 7.02634 7.06345 7.67294 8.29156 9.18925 Molecular weight = 294.15amu Principal moments of inertia in cm(-1) A = 0.023551 B = 0.003657 C = 0.003371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1188.626429 B = 7655.122056 C = 8305.058346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.051 4.051 3 C 0.087 3.913 4 N -0.533 5.533 5 C 0.244 3.756 6 N -0.540 5.540 7 H 0.440 0.560 8 C -0.106 4.106 9 C 0.593 3.407 10 O -0.558 6.558 11 N -0.698 5.698 12 C 0.155 3.845 13 H 0.076 0.924 14 C 0.131 3.869 15 N -0.621 5.621 16 C -0.251 4.251 17 H 0.081 0.919 18 C -0.058 4.058 19 N -0.947 5.947 20 Si 0.980 3.020 21 H -0.281 1.281 22 H -0.291 1.291 23 H -0.274 1.274 24 C 0.161 3.839 25 C 0.092 3.908 26 H 0.096 0.904 27 O -0.569 6.569 28 H 0.071 0.929 29 H 0.035 0.965 30 H 0.058 0.942 31 H 0.085 0.915 32 H 0.074 0.926 33 H 0.267 0.733 34 H 0.411 0.589 35 H 0.034 0.966 36 H 0.043 0.957 37 H 0.250 0.750 38 H 0.021 0.979 39 H 0.028 0.972 40 H 0.397 0.603 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.366 5.534 -19.528 20.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.090 4.090 3 C -0.047 4.047 4 N -0.253 5.253 5 C -0.040 4.040 6 N -0.146 5.146 7 H 0.282 0.718 8 C -0.222 4.222 9 C 0.381 3.619 10 O -0.436 6.436 11 N -0.349 5.349 12 C 0.049 3.951 13 H 0.094 0.906 14 C 0.005 3.995 15 N -0.349 5.349 16 C -0.380 4.380 17 H 0.099 0.901 18 C -0.252 4.252 19 N -0.595 5.595 20 Si 0.807 3.193 21 H -0.207 1.207 22 H -0.217 1.217 23 H -0.200 1.200 24 C 0.035 3.965 25 C 0.032 3.968 26 H 0.113 0.887 27 O -0.377 6.377 28 H 0.090 0.910 29 H 0.055 0.945 30 H 0.077 0.923 31 H 0.103 0.897 32 H 0.093 0.907 33 H 0.282 0.718 34 H 0.247 0.753 35 H 0.053 0.947 36 H 0.060 0.940 37 H 0.059 0.941 38 H 0.039 0.961 39 H 0.046 0.954 40 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges 4.712 4.075 -20.290 21.225 hybrid contribution -0.008 1.225 2.571 2.848 sum 4.704 5.300 -17.719 19.083 Atomic orbital electron populations 1.21543 0.93948 1.02381 1.00942 1.20037 0.96652 0.89148 1.03144 1.21176 0.98899 0.97304 0.87357 1.70132 1.20383 1.04326 1.30430 1.26145 0.97956 0.97689 0.82229 1.43244 1.49525 1.12697 1.09159 0.71759 1.20547 1.17917 0.90231 0.93490 1.17141 0.76888 0.84429 0.83489 1.90826 1.47669 1.21615 1.83454 1.45478 1.67550 1.17251 1.04639 1.21768 0.94493 0.99403 0.79483 0.90561 1.21925 0.94972 0.98426 0.84203 1.44486 1.05260 1.84332 1.00813 1.19408 0.89562 1.42197 0.86822 0.90117 1.25622 0.98941 1.01770 0.98819 1.70102 1.18133 1.55815 1.15494 0.85144 0.78153 0.78146 0.77830 1.20671 1.21661 1.20012 1.21640 0.83588 0.98725 0.92569 1.23153 0.83215 0.95634 0.94842 0.88669 1.86431 1.23757 1.57355 1.70164 0.91002 0.94548 0.92333 0.89690 0.90702 0.71784 0.75267 0.94717 0.93962 0.94094 0.96085 0.95407 0.75303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.16 9.89 71.98 0.71 -2.45 16 2 C -0.05 -1.33 5.93 29.85 0.18 -1.16 16 3 C 0.09 2.26 6.40 41.97 0.27 2.53 16 4 N -0.53 -11.77 11.20 -187.59 -2.10 -13.87 16 5 C 0.24 3.09 13.01 180.33 2.35 5.44 16 6 N -0.54 -7.30 6.07 -188.05 -1.14 -8.44 16 7 H 0.44 2.56 8.32 -92.71 -0.77 1.79 16 8 C -0.11 -2.56 7.08 40.01 0.28 -2.27 16 9 C 0.59 18.01 7.79 86.47 0.67 18.69 16 10 O -0.56 -21.58 14.46 -4.29 -0.06 -21.64 16 11 N -0.70 -18.80 5.19 -439.84 -2.28 -21.08 16 12 C 0.16 5.59 3.15 46.38 0.15 5.74 16 13 H 0.08 3.31 7.54 -2.39 -0.02 3.30 16 14 C 0.13 5.49 6.93 86.85 0.60 6.09 16 15 N -0.62 -31.75 3.39 -691.98 -2.35 -34.10 16 16 C -0.25 -14.13 10.28 84.03 0.86 -13.27 16 17 H 0.08 4.39 7.83 -2.91 -0.02 4.36 16 18 C -0.06 -3.26 5.49 84.86 0.47 -2.80 16 19 N -0.95 -55.37 10.31 21.65 0.22 -55.14 16 20 Si 0.98 45.36 29.55 68.60 2.03 47.38 16 21 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 22 H -0.29 -13.41 7.11 99.48 0.71 -12.70 16 23 H -0.27 -12.16 7.11 99.48 0.71 -11.46 16 24 C 0.16 7.54 5.15 86.73 0.45 7.99 16 25 C 0.09 3.13 3.97 31.78 0.13 3.25 16 26 H 0.10 2.55 8.00 -2.39 -0.02 2.53 16 27 O -0.57 -18.18 13.39 -148.98 -2.00 -20.18 16 28 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 29 H 0.04 1.02 8.14 -2.38 -0.02 1.00 16 30 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 31 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 32 H 0.07 2.23 6.49 -2.38 -0.02 2.22 16 33 H 0.27 0.27 8.06 -2.91 -0.02 0.24 16 34 H 0.41 7.53 7.81 -92.71 -0.72 6.80 16 35 H 0.03 1.55 8.14 -2.39 -0.02 1.53 16 36 H 0.04 1.62 8.14 -2.38 -0.02 1.60 16 37 H 0.25 14.21 8.31 -92.71 -0.77 13.44 16 38 H 0.02 1.14 7.30 -2.39 -0.02 1.12 16 39 H 0.03 1.41 7.51 -2.38 -0.02 1.39 16 40 H 0.40 9.29 9.12 -74.06 -0.68 8.62 16 Total: -1.00 -79.21 335.08 -1.65 -80.86 By element: Atomic # 1 Polarization: 19.50 SS G_CDS: -1.07 Total: 18.43 kcal Atomic # 6 Polarization: 20.67 SS G_CDS: 7.11 Total: 27.78 kcal Atomic # 7 Polarization: -124.98 SS G_CDS: -7.65 Total: -132.63 kcal Atomic # 8 Polarization: -39.76 SS G_CDS: -2.06 Total: -41.82 kcal Atomic # 14 Polarization: 45.36 SS G_CDS: 2.03 Total: 47.38 kcal Total: -79.21 -1.65 -80.86 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078089702.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.308 kcal (2) G-P(sol) polarization free energy of solvation -79.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.860 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds