Wall clock time and date at job start Tue Mar 31 2020 04:44:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42897 * 114.00485 * 2 1 4 4 H 1.09000 * 110.88414 * 32.42243 * 3 2 1 5 5 C 1.54914 * 111.00144 * 268.54653 * 3 2 1 6 6 N 1.47426 * 104.82992 * 204.87916 * 5 3 2 7 7 C 1.36936 * 125.64483 * 204.16378 * 6 5 3 8 8 H 1.08004 * 119.99836 * 179.97438 * 7 6 5 9 9 C 1.38815 * 120.00358 * 359.95842 * 7 6 5 10 10 N 1.31619 * 119.99732 * 0.02562 * 9 7 6 11 11 Si 1.86801 * 120.00198 * 179.97438 * 9 7 6 12 12 H 1.48507 * 109.46852 * 89.99788 * 11 9 7 13 13 H 1.48497 * 109.47226 * 209.99639 * 11 9 7 14 14 H 1.48500 * 109.46864 * 330.00142 * 11 9 7 15 15 C 1.47018 * 108.70517 * 24.12623 * 6 5 3 16 16 C 1.54325 * 107.40412 * 358.86539 * 15 6 5 17 17 H 1.09000 * 110.72188 * 96.24097 * 16 15 6 18 18 N 1.46495 * 110.72250 * 219.52320 * 16 15 6 19 19 C 1.34776 * 119.99803 * 273.54657 * 18 16 15 20 20 O 1.21602 * 119.99871 * 359.97438 * 19 18 16 21 21 C 1.47431 * 119.99913 * 180.02562 * 19 18 16 22 22 C 1.41288 * 126.41449 * 359.67872 * 21 19 18 23 23 N 1.30453 * 108.01989 * 179.86386 * 22 21 19 24 24 N 1.39926 * 108.89720 * 0.40589 * 23 22 21 25 25 C 1.46505 * 125.75365 * 179.74241 * 24 23 22 26 26 C 1.34262 * 108.49616 * 359.74081 * 24 23 22 27 27 H 1.08998 * 109.47560 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.46858 * 300.00860 * 1 2 3 29 29 H 1.09006 * 109.47103 * 59.99918 * 1 2 3 30 30 H 1.08999 * 110.37121 * 86.03651 * 5 3 2 31 31 H 1.09003 * 110.36718 * 323.71555 * 5 3 2 32 32 H 0.96996 * 119.99954 * 180.02562 * 10 9 7 33 33 H 1.09002 * 109.88241 * 118.36067 * 15 6 5 34 34 H 1.09000 * 109.88049 * 239.37196 * 15 6 5 35 35 H 0.96997 * 120.00433 * 93.54551 * 18 16 15 36 36 H 1.08003 * 125.98665 * 0.02562 * 22 21 19 37 37 H 1.09006 * 109.46559 * 269.99935 * 25 24 23 38 38 H 1.08996 * 109.47342 * 29.99716 * 25 24 23 39 39 H 1.08997 * 109.47252 * 150.00509 * 25 24 23 40 40 H 1.07993 * 126.29383 * 180.02562 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3831 2.0100 0.5460 5 6 2.2697 1.7976 -1.4458 6 7 3.3607 2.7811 -1.3195 7 6 3.6220 3.8001 -2.1962 8 1 4.4485 4.4708 -2.0137 9 6 2.8247 3.9707 -3.3197 10 7 1.8173 3.1534 -3.5420 11 14 3.1807 5.3612 -4.5152 12 1 4.1219 4.8859 -5.5611 13 1 1.9142 5.8024 -5.1526 14 1 3.7893 6.5004 -3.7824 15 6 4.1211 2.4872 -0.0961 16 6 3.4498 1.2760 0.5850 17 1 3.9572 0.3504 0.3130 18 7 3.4250 1.4472 2.0397 19 6 4.4818 1.0609 2.7817 20 8 5.4555 0.5699 2.2437 21 6 4.4567 1.2326 4.2457 22 6 3.4044 1.7889 5.0071 23 7 3.7579 1.7644 6.2625 24 7 5.0381 1.2082 6.3621 25 6 5.7916 1.0111 7.6029 26 6 5.4594 0.8858 5.1288 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5140 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 1.3761 2.2723 -1.8510 31 1 2.5795 0.9667 -2.0796 32 1 1.2604 3.2724 -4.3272 33 1 5.1530 2.2447 -0.3502 34 1 4.0965 3.3485 0.5715 35 1 2.6482 1.8385 2.4689 36 1 2.4700 2.1656 4.6180 37 1 6.3926 1.8971 7.8077 38 1 5.0977 0.8444 8.4268 39 1 6.4451 0.1452 7.4974 40 1 6.4082 0.4370 4.8744 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001081339148.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:44:52 Heat of formation + Delta-G solvation = 9.455692 kcal Electronic energy + Delta-G solvation = -23618.363935 eV Core-core repulsion = 20049.340271 eV Total energy + Delta-G solvation = -3569.023664 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.148 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.33838 -40.74107 -39.34281 -37.47280 -35.59013 -34.39456 -33.54551 -31.45041 -30.49572 -28.99568 -27.78785 -27.47252 -26.03114 -23.90613 -22.34981 -22.17288 -21.59190 -20.99700 -19.32055 -18.72795 -17.91983 -17.22687 -16.76759 -16.60425 -16.53230 -15.86232 -15.71813 -15.62170 -15.45171 -15.22804 -14.84205 -14.45397 -13.93135 -13.86773 -13.71224 -13.48001 -13.41376 -13.16203 -12.94499 -12.72440 -12.57326 -12.30556 -12.11515 -12.02627 -11.87832 -11.51122 -10.98957 -10.78202 -10.57107 -10.51707 -10.15134 -9.65170 -8.95042 -7.79119 -5.26145 0.54085 1.15622 1.45115 1.48542 1.50709 1.59414 2.19588 2.45184 2.49292 2.77267 3.31694 3.49536 3.63568 3.81663 3.83880 4.01413 4.07768 4.14973 4.18605 4.40435 4.44506 4.50542 4.58745 4.64346 4.69652 4.71566 4.73378 4.88972 4.91535 5.01117 5.32022 5.38506 5.46462 5.51671 5.70345 5.87926 6.20939 6.33615 6.48121 6.65138 7.06532 7.31087 7.71111 8.33871 9.22365 Molecular weight = 294.15amu Principal moments of inertia in cm(-1) A = 0.020809 B = 0.003615 C = 0.003277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1345.230137 B = 7742.817945 C = 8543.230927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.395 6.395 3 C 0.078 3.922 4 H 0.090 0.910 5 C 0.145 3.855 6 N -0.619 5.619 7 C -0.243 4.243 8 H 0.082 0.918 9 C -0.062 4.062 10 N -0.947 5.947 11 Si 0.984 3.016 12 H -0.289 1.289 13 H -0.289 1.289 14 H -0.268 1.268 15 C 0.132 3.868 16 C 0.158 3.842 17 H 0.080 0.920 18 N -0.699 5.699 19 C 0.595 3.405 20 O -0.592 6.592 21 C -0.315 4.315 22 C 0.087 3.913 23 N -0.323 5.323 24 N -0.361 5.361 25 C 0.086 3.914 26 C 0.134 3.866 27 H 0.103 0.897 28 H 0.061 0.939 29 H 0.034 0.966 30 H 0.088 0.912 31 H -0.011 1.011 32 H 0.250 0.750 33 H 0.016 0.984 34 H 0.040 0.960 35 H 0.413 0.587 36 H 0.213 0.787 37 H 0.093 0.907 38 H 0.100 0.900 39 H 0.118 0.882 40 H 0.208 0.792 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.367 -4.742 22.179 22.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.314 6.314 3 C 0.018 3.982 4 H 0.108 0.892 5 C 0.019 3.981 6 N -0.346 5.346 7 C -0.372 4.372 8 H 0.100 0.900 9 C -0.255 4.255 10 N -0.596 5.596 11 Si 0.812 3.188 12 H -0.216 1.216 13 H -0.215 1.215 14 H -0.193 1.193 15 C 0.005 3.995 16 C 0.051 3.949 17 H 0.098 0.902 18 N -0.350 5.350 19 C 0.385 3.615 20 O -0.473 6.473 21 C -0.330 4.330 22 C -0.100 4.100 23 N -0.143 5.143 24 N -0.140 5.140 25 C -0.053 4.053 26 C -0.019 4.019 27 H 0.121 0.879 28 H 0.080 0.920 29 H 0.053 0.947 30 H 0.106 0.894 31 H 0.007 0.993 32 H 0.060 0.940 33 H 0.034 0.966 34 H 0.058 0.942 35 H 0.250 0.750 36 H 0.230 0.770 37 H 0.111 0.889 38 H 0.118 0.882 39 H 0.136 0.864 40 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges 1.808 -4.907 23.023 23.610 hybrid contribution -0.027 0.705 -1.846 1.976 sum 1.780 -4.202 21.178 21.664 Atomic orbital electron populations 1.22971 0.79318 1.03864 1.00735 1.87832 1.21713 1.26830 1.95009 1.23650 0.92744 0.84775 0.97002 0.89214 1.22095 0.93816 0.90259 0.91959 1.44552 1.32867 1.32850 1.24367 1.19461 1.11361 1.04812 1.01526 0.90011 1.25647 0.97996 1.01782 1.00039 1.69988 1.20650 1.40062 1.28949 0.85000 0.76681 0.78639 0.78500 1.21616 1.21547 1.19301 1.21673 0.94233 0.95290 0.88271 1.21609 0.95641 0.97782 0.79821 0.90234 1.45490 1.19871 1.63908 1.05748 1.17619 0.81740 0.76134 0.86016 1.90749 1.34818 1.47308 1.74436 1.20150 0.99694 1.20295 0.92848 1.24441 0.99690 0.96318 0.89588 1.77133 0.95949 1.20920 1.20298 1.48791 1.12703 1.44925 1.07537 1.22406 0.96077 1.04972 0.81829 1.23306 0.99598 0.95039 0.83958 0.87859 0.92010 0.94722 0.89412 0.99333 0.94039 0.96593 0.94187 0.75020 0.77038 0.88859 0.88174 0.86357 0.77547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.73 10.89 113.37 1.23 1.97 16 2 O -0.40 -14.28 10.52 -148.98 -1.57 -15.84 16 3 C 0.08 2.99 3.11 32.08 0.10 3.09 16 4 H 0.09 3.04 7.76 -2.39 -0.02 3.02 16 5 C 0.14 7.31 5.63 86.86 0.49 7.80 16 6 N -0.62 -32.91 3.39 -691.97 -2.35 -35.26 16 7 C -0.24 -13.85 10.27 84.03 0.86 -12.99 16 8 H 0.08 4.49 7.83 -2.91 -0.02 4.47 16 9 C -0.06 -3.51 5.49 84.86 0.47 -3.05 16 10 N -0.95 -56.00 10.09 21.65 0.22 -55.79 16 11 Si 0.98 45.63 29.55 68.60 2.03 47.66 16 12 H -0.29 -13.37 7.11 99.48 0.71 -12.66 16 13 H -0.29 -13.27 7.11 99.48 0.71 -12.57 16 14 H -0.27 -11.78 7.11 99.48 0.71 -11.08 16 15 C 0.13 5.95 6.98 86.73 0.61 6.56 16 16 C 0.16 6.10 2.99 46.27 0.14 6.24 16 17 H 0.08 3.46 7.70 -2.39 -0.02 3.44 16 18 N -0.70 -21.10 5.12 -439.77 -2.25 -23.35 16 19 C 0.60 18.86 7.81 86.67 0.68 19.54 16 20 O -0.59 -23.47 16.63 -4.04 -0.07 -23.53 16 21 C -0.31 -7.68 6.13 -20.15 -0.12 -7.80 16 22 C 0.09 1.78 11.50 85.65 0.99 2.77 16 23 N -0.32 -6.87 12.50 -56.27 -0.70 -7.58 16 24 N -0.36 -6.14 3.98 -367.77 -1.46 -7.60 16 25 C 0.09 0.58 11.44 127.77 1.46 2.04 16 26 C 0.13 2.63 11.30 84.28 0.95 3.58 16 27 H 0.10 2.28 8.14 -2.39 -0.02 2.26 16 28 H 0.06 1.35 8.11 -2.39 -0.02 1.33 16 29 H 0.03 1.03 8.14 -2.38 -0.02 1.01 16 30 H 0.09 4.87 5.87 -2.39 -0.01 4.85 16 31 H -0.01 -0.64 8.14 -2.39 -0.02 -0.66 16 32 H 0.25 14.27 8.31 -92.71 -0.77 13.50 16 33 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 34 H 0.04 1.72 8.03 -2.39 -0.02 1.70 16 35 H 0.41 9.54 7.48 -92.71 -0.69 8.85 16 36 H 0.21 2.97 7.50 -2.91 -0.02 2.94 16 37 H 0.09 0.42 8.14 -2.38 -0.02 0.40 16 38 H 0.10 0.56 8.14 -2.39 -0.02 0.54 16 39 H 0.12 0.18 8.14 -2.39 -0.02 0.16 16 40 H 0.21 3.10 8.06 -2.91 -0.02 3.08 16 Total: -1.00 -78.26 340.29 2.05 -76.21 By element: Atomic # 1 Polarization: 14.98 SS G_CDS: 0.36 Total: 15.34 kcal Atomic # 6 Polarization: 21.89 SS G_CDS: 7.85 Total: 29.74 kcal Atomic # 7 Polarization: -123.02 SS G_CDS: -6.55 Total: -129.58 kcal Atomic # 8 Polarization: -37.74 SS G_CDS: -1.63 Total: -39.38 kcal Atomic # 14 Polarization: 45.63 SS G_CDS: 2.03 Total: 47.66 kcal Total: -78.26 2.05 -76.21 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001081339148.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.665 kcal (2) G-P(sol) polarization free energy of solvation -78.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.210 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds