Wall clock time and date at job start Tue Mar 31 2020 04:44:59
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42906 * 1
3 3 C 1.42900 * 113.99985 * 2 1
4 4 H 1.08999 * 110.77719 * 26.75788 * 3 2 1
5 5 C 1.54328 * 110.71929 * 263.52477 * 3 2 1
6 6 N 1.47025 * 107.26871 * 219.44394 * 5 3 2
7 7 C 1.36931 * 125.64613 * 178.89879 * 6 5 3
8 8 H 1.08002 * 120.00003 * 180.02562 * 7 6 5
9 9 C 1.38810 * 120.00460 * 0.02562 * 7 6 5
10 10 N 1.31617 * 119.99620 * 0.02562 * 9 7 6
11 11 Si 1.86797 * 120.00245 * 179.97438 * 9 7 6
12 12 H 1.48496 * 109.47143 * 60.00436 * 11 9 7
13 13 H 1.48499 * 109.47174 * 180.02562 * 11 9 7
14 14 H 1.48497 * 109.47281 * 300.00386 * 11 9 7
15 15 C 1.47469 * 108.72389 * 358.97336 * 6 5 3
16 16 C 1.54914 * 104.80943 * 24.06810 * 15 6 5
17 17 H 1.09005 * 111.00089 * 81.14099 * 16 15 6
18 18 N 1.46499 * 111.00228 * 204.94798 * 16 15 6
19 19 C 1.34777 * 120.00195 * 270.41799 * 18 16 15
20 20 O 1.21573 * 119.99941 * 0.02562 * 19 18 16
21 21 C 1.47711 * 119.99927 * 180.27919 * 19 18 16
22 22 C 1.41506 * 126.51875 * 179.72952 * 21 19 18
23 23 C 1.35358 * 105.50173 * 179.97438 * 22 21 19
24 24 N 1.35035 * 107.23240 * 359.97438 * 23 22 21
25 25 C 1.46494 * 124.88533 * 179.97438 * 24 23 22
26 26 N 1.28463 * 110.22573 * 359.76208 * 24 23 22
27 27 H 1.08998 * 109.47172 * 180.02562 * 1 2 3
28 28 H 1.08999 * 109.46955 * 300.00323 * 1 2 3
29 29 H 1.09004 * 109.46816 * 60.00085 * 1 2 3
30 30 H 1.08996 * 109.87878 * 338.85752 * 5 3 2
31 31 H 1.08994 * 109.88608 * 100.02326 * 5 3 2
32 32 H 0.97000 * 119.99970 * 179.97438 * 10 9 7
33 33 H 1.08997 * 110.34970 * 265.25562 * 15 6 5
34 34 H 1.08998 * 110.40902 * 142.91575 * 15 6 5
35 35 H 0.97000 * 120.00069 * 90.42527 * 18 16 15
36 36 H 1.08004 * 127.24407 * 359.92051 * 22 21 19
37 37 H 1.08008 * 126.38544 * 179.97438 * 23 22 21
38 38 H 1.09008 * 109.47355 * 89.99961 * 25 24 23
39 39 H 1.09001 * 109.47321 * 209.99555 * 25 24 23
40 40 H 1.09001 * 109.47326 * 329.99706 * 25 24 23
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4291 0.0000 0.0000
3 6 2.0103 1.3055 0.0000
4 1 1.3362 2.0288 0.4588
5 6 2.3811 1.7380 -1.4343
6 7 3.6685 2.4439 -1.3581
7 6 4.3547 2.9690 -2.4204
8 1 5.2973 3.4711 -2.2594
9 6 3.8389 2.8561 -3.7042
10 7 2.6900 2.2447 -3.9003
11 14 4.7747 3.5732 -5.1532
12 1 6.1108 2.9318 -5.2458
13 1 4.0167 3.3219 -6.4051
14 1 4.9402 5.0363 -4.9604
15 6 4.0998 2.4913 0.0513
16 6 3.3816 1.2958 0.7256
17 1 3.9156 0.3639 0.5395
18 7 3.2168 1.5252 2.1631
19 6 4.1768 1.1308 3.0229
20 8 5.1798 0.5850 2.6055
21 6 4.0078 1.3566 4.4728
22 6 4.9195 0.9959 5.4931
23 6 4.3449 1.3985 6.6507
24 7 3.1611 1.9655 6.3336
25 6 2.2190 2.5346 7.3004
26 7 2.9820 1.9381 5.0618
27 1 -0.3633 -1.0276 0.0005
28 1 -0.3633 0.5139 0.8900
29 1 -0.3633 0.5138 -0.8900
30 1 2.4769 0.8601 -2.0731
31 1 1.6153 2.4052 -1.8299
32 1 2.3294 2.1661 -4.7973
33 1 3.7888 3.4292 0.5115
34 1 5.1810 2.3733 0.1221
35 1 2.4167 1.9609 2.4961
36 1 5.8727 0.5024 5.3735
37 1 4.7565 1.2869 7.6430
38 1 2.4468 3.5898 7.4519
39 1 1.2025 2.4334 6.9200
40 1 2.3066 2.0042 8.2486
RHF calculation, no. of doubly occupied orbitals= 55
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001082370271.mol2 40
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 04:44:59
Heat of formation + Delta-G solvation = 40.707414 kcal
Electronic energy + Delta-G solvation = -23687.748490 eV
Core-core repulsion = 20120.080002 eV
Total energy + Delta-G solvation = -3567.668488 eV
No. of doubly occupied orbitals = 55
Molecular weight
(most abundant/longest-lived isotopes) = 294.148 amu
Computer time = 0.73 seconds
Orbital eigenvalues (eV)
-42.73720 -39.41271 -37.94579 -35.82293 -33.98580 -33.59691 -31.72317 -30.82266
-28.84272 -27.89991 -26.77938 -26.04794 -24.34285 -22.88339 -21.59538 -20.44215
-20.36693 -19.66485 -18.01043 -16.99984 -16.59500 -16.43552 -16.18128 -15.44985
-14.76111 -14.50992 -14.42103 -14.19097 -14.08925 -13.76383 -13.38226 -13.19707
-13.04268 -12.90882 -12.60856 -12.17319 -11.81312 -11.50483 -11.17065 -11.04087
-10.95514 -10.74489 -10.69444 -10.15063 -9.97032 -9.85958 -9.72064 -9.40692
-9.19535 -9.03818 -8.67518 -8.50034 -6.82882 -5.67682 -3.02450 1.55684
2.05120 2.27078 3.38436 3.45864 3.49248 3.50974 3.60015 4.15146
4.20696 4.55544 4.59533 4.68305 4.75749 4.96109 5.15224 5.24600
5.46880 5.54115 5.55102 5.64586 5.65944 5.71442 5.78324 5.91881
5.97698 6.12397 6.24658 6.27845 6.56136 6.61283 6.71216 6.94481
7.32219 7.53534 7.62879 7.76763 7.90374 7.93656 8.25961 8.48224
9.23200 9.83234 10.46974 11.43709
Molecular weight = 294.15amu
Principal moments of inertia in cm(-1)
A = 0.021695 B = 0.003651 C = 0.003338
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1290.287170 B = 7666.264943 C = 8385.818374
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.035 3.965
2 O -0.377 6.377
3 C 0.056 3.944
4 H 0.063 0.937
5 C 0.166 3.834
6 N -0.600 5.600
7 C -0.228 4.228
8 H 0.080 0.920
9 C -0.008 4.008
10 N -0.923 5.923
11 Si 0.915 3.085
12 H -0.284 1.284
13 H -0.290 1.290
14 H -0.285 1.285
15 C 0.130 3.870
16 C 0.132 3.868
17 H 0.107 0.893
18 N -0.702 5.702
19 C 0.602 3.398
20 O -0.530 6.530
21 C -0.009 4.009
22 C -0.178 4.178
23 C -0.023 4.023
24 N -0.289 5.289
25 C 0.088 3.912
26 N -0.264 5.264
27 H 0.079 0.921
28 H 0.033 0.967
29 H 0.045 0.955
30 H 0.063 0.937
31 H 0.048 0.952
32 H 0.253 0.747
33 H 0.024 0.976
34 H 0.052 0.948
35 H 0.402 0.598
36 H 0.163 0.837
37 H 0.181 0.819
38 H 0.084 0.916
39 H 0.096 0.904
40 H 0.094 0.906
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -4.504 -0.761 23.322 23.765
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.062 4.062
2 O -0.295 6.295
3 C -0.003 4.003
4 H 0.081 0.919
5 C 0.041 3.959
6 N -0.328 5.328
7 C -0.356 4.356
8 H 0.098 0.902
9 C -0.204 4.204
10 N -0.570 5.570
11 Si 0.745 3.255
12 H -0.211 1.211
13 H -0.216 1.216
14 H -0.212 1.212
15 C 0.003 3.997
16 C 0.027 3.973
17 H 0.125 0.875
18 N -0.352 5.352
19 C 0.386 3.614
20 O -0.404 6.404
21 C -0.170 4.170
22 C -0.206 4.206
23 C -0.165 4.165
24 N -0.077 5.077
25 C -0.053 4.053
26 N -0.100 5.100
27 H 0.097 0.903
28 H 0.051 0.949
29 H 0.063 0.937
30 H 0.081 0.919
31 H 0.066 0.934
32 H 0.063 0.937
33 H 0.041 0.959
34 H 0.070 0.930
35 H 0.236 0.764
36 H 0.181 0.819
37 H 0.198 0.802
38 H 0.102 0.898
39 H 0.114 0.886
40 H 0.113 0.887
Dipole moment (debyes) X Y Z Total
from point charges -4.824 -0.763 22.631 23.152
hybrid contribution 0.492 0.496 -0.270 0.749
sum -4.332 -0.267 22.361 22.778
Atomic orbital electron populations
1.22705 0.81810 1.01999 0.99717 1.87910 1.19034 1.27564 1.95034
1.23840 0.92921 0.84079 0.99455 0.91868 1.21554 0.88210 0.97234
0.88946 1.44261 1.21372 1.66511 1.00675 1.19043 1.02313 1.29529
0.84711 0.90180 1.24812 0.97440 1.00755 0.97367 1.69931 1.19157
1.47294 1.20665 0.86152 0.78883 0.78654 0.81793 1.21053 1.21622
1.21187 1.21846 0.97871 0.93849 0.86139 1.22442 0.96543 1.01111
0.77212 0.87491 1.45789 1.21813 1.60586 1.07031 1.16861 0.83236
0.78423 0.82885 1.90810 1.28916 1.42908 1.77771 1.22075 0.94126
1.05478 0.95278 1.21820 1.02209 1.06456 0.90148 1.22839 0.88777
1.03834 1.01098 1.45392 1.15598 1.42156 1.04548 1.22152 0.93119
0.99751 0.90262 1.73514 1.24980 1.19775 0.91740 0.90286 0.94859
0.93657 0.91914 0.93362 0.93657 0.95861 0.93001 0.76396 0.81946
0.80152 0.89755 0.88552 0.88703
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.51 10.85 101.05 1.10 1.61 16
2 O -0.38 -7.30 10.43 -35.23 -0.37 -7.67 16
3 C 0.06 1.12 3.08 -24.90 -0.08 1.04 16
4 H 0.06 1.13 7.68 -51.93 -0.40 0.73 16
5 C 0.17 4.15 5.15 -3.06 -0.02 4.14 16
6 N -0.60 -15.95 3.40 -170.04 -0.58 -16.53 16
7 C -0.23 -6.54 10.28 -15.06 -0.15 -6.69 16
8 H 0.08 2.22 7.83 -52.49 -0.41 1.80 16
9 C -0.01 -0.22 5.49 -17.43 -0.10 -0.31 16
10 N -0.92 -27.45 10.31 55.49 0.57 -26.87 16
11 Si 0.91 22.54 29.55 -169.99 -5.02 17.52 16
12 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16
13 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16
14 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16
15 C 0.13 2.94 6.93 -2.50 -0.02 2.92 16
16 C 0.13 2.66 3.09 -65.78 -0.20 2.46 16
17 H 0.11 2.41 7.63 -51.93 -0.40 2.01 16
18 N -0.70 -11.98 5.21 -52.71 -0.27 -12.26 16
19 C 0.60 10.70 7.83 -12.39 -0.10 10.60 16
20 O -0.53 -11.10 16.62 5.30 0.09 -11.01 16
21 C -0.01 -0.13 7.13 -82.76 -0.59 -0.72 16
22 C -0.18 -2.17 10.81 -39.36 -0.43 -2.59 16
23 C -0.02 -0.20 11.46 -17.17 -0.20 -0.40 16
24 N -0.29 -2.71 3.70 -68.13 -0.25 -2.96 16
25 C 0.09 0.37 11.31 59.84 0.68 1.05 16
26 N -0.26 -3.41 11.67 33.42 0.39 -3.02 16
27 H 0.08 1.01 8.14 -51.93 -0.42 0.58 16
28 H 0.03 0.42 8.11 -51.93 -0.42 0.00 16
29 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16
30 H 0.06 1.77 7.30 -51.93 -0.38 1.39 16
31 H 0.05 1.30 7.51 -51.93 -0.39 0.91 16
32 H 0.25 7.32 8.31 -40.82 -0.34 6.98 16
33 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16
34 H 0.05 1.20 8.14 -51.93 -0.42 0.78 16
35 H 0.40 6.00 8.26 -40.82 -0.34 5.66 16
36 H 0.16 1.82 8.06 -52.48 -0.42 1.40 16
37 H 0.18 0.79 8.06 -52.48 -0.42 0.37 16
38 H 0.08 0.26 8.14 -51.92 -0.42 -0.16 16
39 H 0.10 0.38 8.14 -51.93 -0.42 -0.04 16
40 H 0.09 0.13 8.13 -51.93 -0.42 -0.29 16
LS Contribution 341.33 15.07 5.14 5.14
Total: -1.00 -35.83 341.33 -6.07 -41.91
By element:
Atomic # 1 Polarization: 8.35 SS G_CDS: -5.67 Total: 2.67 kcal
Atomic # 6 Polarization: 13.19 SS G_CDS: -0.10 Total: 13.09 kcal
Atomic # 7 Polarization: -61.51 SS G_CDS: -0.14 Total: -61.65 kcal
Atomic # 8 Polarization: -18.40 SS G_CDS: -0.28 Total: -18.68 kcal
Atomic # 14 Polarization: 22.54 SS G_CDS: -5.02 Total: 17.52 kcal
Total LS contribution 5.14 Total: 5.14 kcal
Total: -35.83 -6.07 -41.91 kcal
The number of atoms in the molecule is 40
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001082370271.mol2 40
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 82.615 kcal
(2) G-P(sol) polarization free energy of solvation -35.833 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.781 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.074 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.907 kcal
(6) G-S(sol) free energy of system = (1) + (5) 40.707 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.73 seconds