Wall clock time and date at job start Tue Mar 31 2020 04:44:59
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42906 * 1
3 3 C 1.42900 * 113.99985 * 2 1
4 4 H 1.08999 * 110.77719 * 26.75788 * 3 2 1
5 5 C 1.54328 * 110.71929 * 263.52477 * 3 2 1
6 6 N 1.47025 * 107.26871 * 219.44394 * 5 3 2
7 7 C 1.36931 * 125.64613 * 178.89879 * 6 5 3
8 8 H 1.08002 * 120.00003 * 180.02562 * 7 6 5
9 9 C 1.38810 * 120.00460 * 0.02562 * 7 6 5
10 10 N 1.31617 * 119.99620 * 0.02562 * 9 7 6
11 11 Si 1.86797 * 120.00245 * 179.97438 * 9 7 6
12 12 H 1.48496 * 109.47143 * 60.00436 * 11 9 7
13 13 H 1.48499 * 109.47174 * 180.02562 * 11 9 7
14 14 H 1.48497 * 109.47281 * 300.00386 * 11 9 7
15 15 C 1.47469 * 108.72389 * 358.97336 * 6 5 3
16 16 C 1.54914 * 104.80943 * 24.06810 * 15 6 5
17 17 H 1.09005 * 111.00089 * 81.14099 * 16 15 6
18 18 N 1.46499 * 111.00228 * 204.94798 * 16 15 6
19 19 C 1.34777 * 120.00195 * 270.41799 * 18 16 15
20 20 O 1.21573 * 119.99941 * 0.02562 * 19 18 16
21 21 C 1.47711 * 119.99927 * 180.27919 * 19 18 16
22 22 C 1.41506 * 126.51875 * 179.72952 * 21 19 18
23 23 C 1.35358 * 105.50173 * 179.97438 * 22 21 19
24 24 N 1.35035 * 107.23240 * 359.97438 * 23 22 21
25 25 C 1.46494 * 124.88533 * 179.97438 * 24 23 22
26 26 N 1.28463 * 110.22573 * 359.76208 * 24 23 22
27 27 H 1.08998 * 109.47172 * 180.02562 * 1 2 3
28 28 H 1.08999 * 109.46955 * 300.00323 * 1 2 3
29 29 H 1.09004 * 109.46816 * 60.00085 * 1 2 3
30 30 H 1.08996 * 109.87878 * 338.85752 * 5 3 2
31 31 H 1.08994 * 109.88608 * 100.02326 * 5 3 2
32 32 H 0.97000 * 119.99970 * 179.97438 * 10 9 7
33 33 H 1.08997 * 110.34970 * 265.25562 * 15 6 5
34 34 H 1.08998 * 110.40902 * 142.91575 * 15 6 5
35 35 H 0.97000 * 120.00069 * 90.42527 * 18 16 15
36 36 H 1.08004 * 127.24407 * 359.92051 * 22 21 19
37 37 H 1.08008 * 126.38544 * 179.97438 * 23 22 21
38 38 H 1.09008 * 109.47355 * 89.99961 * 25 24 23
39 39 H 1.09001 * 109.47321 * 209.99555 * 25 24 23
40 40 H 1.09001 * 109.47326 * 329.99706 * 25 24 23
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4291 0.0000 0.0000
3 6 2.0103 1.3055 0.0000
4 1 1.3362 2.0288 0.4588
5 6 2.3811 1.7380 -1.4343
6 7 3.6685 2.4439 -1.3581
7 6 4.3547 2.9690 -2.4204
8 1 5.2973 3.4711 -2.2594
9 6 3.8389 2.8561 -3.7042
10 7 2.6900 2.2447 -3.9003
11 14 4.7747 3.5732 -5.1532
12 1 6.1108 2.9318 -5.2458
13 1 4.0167 3.3219 -6.4051
14 1 4.9402 5.0363 -4.9604
15 6 4.0998 2.4913 0.0513
16 6 3.3816 1.2958 0.7256
17 1 3.9156 0.3639 0.5395
18 7 3.2168 1.5252 2.1631
19 6 4.1768 1.1308 3.0229
20 8 5.1798 0.5850 2.6055
21 6 4.0078 1.3566 4.4728
22 6 4.9195 0.9959 5.4931
23 6 4.3449 1.3985 6.6507
24 7 3.1611 1.9655 6.3336
25 6 2.2190 2.5346 7.3004
26 7 2.9820 1.9381 5.0618
27 1 -0.3633 -1.0276 0.0005
28 1 -0.3633 0.5139 0.8900
29 1 -0.3633 0.5138 -0.8900
30 1 2.4769 0.8601 -2.0731
31 1 1.6153 2.4052 -1.8299
32 1 2.3294 2.1661 -4.7973
33 1 3.7888 3.4292 0.5115
34 1 5.1810 2.3733 0.1221
35 1 2.4167 1.9609 2.4961
36 1 5.8727 0.5024 5.3735
37 1 4.7565 1.2869 7.6430
38 1 2.4468 3.5898 7.4519
39 1 1.2025 2.4334 6.9200
40 1 2.3066 2.0042 8.2486
RHF calculation, no. of doubly occupied orbitals= 55
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001082370271.mol2 40
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 04:44:59
Heat of formation + Delta-G solvation = 12.743721 kcal
Electronic energy + Delta-G solvation = -23688.961087 eV
Core-core repulsion = 20120.080002 eV
Total energy + Delta-G solvation = -3568.881084 eV
No. of doubly occupied orbitals = 55
Molecular weight
(most abundant/longest-lived isotopes) = 294.148 amu
Computer time = 0.68 seconds
Orbital eigenvalues (eV)
-43.56793 -40.94650 -39.52349 -37.51962 -35.65774 -34.39857 -33.62006 -31.71358
-30.61570 -29.22597 -28.04360 -27.51312 -26.11227 -24.11860 -22.42358 -22.23013
-21.98923 -21.01389 -19.27231 -18.65682 -18.02209 -17.39591 -17.21961 -17.18597
-16.49039 -15.92709 -15.82869 -15.77070 -15.28675 -15.05219 -14.73850 -14.58378
-14.16006 -13.94419 -13.61941 -13.54142 -13.31195 -13.20640 -12.99883 -12.72816
-12.59916 -12.33480 -12.11792 -11.94974 -11.86345 -11.67096 -11.35441 -10.76718
-10.63076 -10.29692 -10.13335 -9.95112 -8.97777 -7.86970 -5.25672 0.51744
1.23011 1.46021 1.50517 1.56395 1.61281 2.06570 2.34591 2.47377
2.75214 3.31668 3.34703 3.50004 3.78205 3.89703 3.98293 4.03735
4.11657 4.34523 4.42582 4.45557 4.50929 4.57943 4.63508 4.74519
4.78356 4.79763 4.81141 4.85287 4.95701 5.29498 5.33214 5.37659
5.43163 5.64558 5.93003 6.12753 6.29139 6.40385 6.90788 7.04272
7.14117 7.68799 8.32137 9.22500
Molecular weight = 294.15amu
Principal moments of inertia in cm(-1)
A = 0.021695 B = 0.003651 C = 0.003338
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1290.287170 B = 7666.264943 C = 8385.818374
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.026 3.974
2 O -0.397 6.397
3 C 0.077 3.923
4 H 0.094 0.906
5 C 0.177 3.823
6 N -0.621 5.621
7 C -0.251 4.251
8 H 0.083 0.917
9 C -0.061 4.061
10 N -0.949 5.949
11 Si 0.984 3.016
12 H -0.279 1.279
13 H -0.291 1.291
14 H -0.274 1.274
15 C 0.132 3.868
16 C 0.149 3.851
17 H 0.079 0.921
18 N -0.691 5.691
19 C 0.601 3.399
20 O -0.572 6.572
21 C -0.045 4.045
22 C -0.206 4.206
23 C 0.005 3.995
24 N -0.278 5.278
25 C 0.075 3.925
26 N -0.276 5.276
27 H 0.102 0.898
28 H 0.061 0.939
29 H 0.038 0.962
30 H 0.020 0.980
31 H 0.024 0.976
32 H 0.249 0.751
33 H 0.039 0.961
34 H 0.038 0.962
35 H 0.415 0.585
36 H 0.161 0.839
37 H 0.232 0.768
38 H 0.100 0.900
39 H 0.098 0.902
40 H 0.132 0.868
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -5.283 0.076 26.485 27.007
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.070 4.070
2 O -0.316 6.316
3 C 0.018 3.982
4 H 0.112 0.888
5 C 0.051 3.949
6 N -0.349 5.349
7 C -0.379 4.379
8 H 0.101 0.899
9 C -0.255 4.255
10 N -0.597 5.597
11 Si 0.812 3.188
12 H -0.205 1.205
13 H -0.217 1.217
14 H -0.199 1.199
15 C 0.005 3.995
16 C 0.042 3.958
17 H 0.097 0.903
18 N -0.342 5.342
19 C 0.387 3.613
20 O -0.450 6.450
21 C -0.203 4.203
22 C -0.235 4.235
23 C -0.138 4.138
24 N -0.067 5.067
25 C -0.063 4.063
26 N -0.114 5.114
27 H 0.120 0.880
28 H 0.080 0.920
29 H 0.057 0.943
30 H 0.039 0.961
31 H 0.042 0.958
32 H 0.059 0.941
33 H 0.057 0.943
34 H 0.056 0.944
35 H 0.252 0.748
36 H 0.179 0.821
37 H 0.248 0.752
38 H 0.119 0.881
39 H 0.117 0.883
40 H 0.150 0.850
Dipole moment (debyes) X Y Z Total
from point charges -5.637 0.092 25.843 26.451
hybrid contribution 0.672 0.238 -1.091 1.304
sum -4.965 0.330 24.751 25.246
Atomic orbital electron populations
1.23000 0.79265 1.03976 1.00737 1.87892 1.21849 1.26888 1.94937
1.23480 0.93400 0.85278 0.96023 0.88839 1.21281 0.87175 0.94809
0.91619 1.44525 1.21978 1.66483 1.01876 1.19438 1.02811 1.29836
0.85860 0.89892 1.25701 0.98458 1.01334 0.99977 1.70155 1.20483
1.48236 1.20813 0.85077 0.77489 0.78305 0.77978 1.20497 1.21672
1.19940 1.21910 0.97370 0.95478 0.84702 1.21923 0.96055 0.98671
0.79101 0.90302 1.45554 1.22447 1.60718 1.05432 1.17337 0.82338
0.77246 0.84369 1.90774 1.30526 1.44789 1.78899 1.21675 0.96309
1.08585 0.93758 1.22035 1.02551 1.07933 0.90941 1.23482 0.87571
1.00834 1.01951 1.45959 1.16341 1.40470 1.03978 1.22658 0.92206
1.01079 0.90385 1.73436 1.24496 1.19901 0.93613 0.87976 0.92021
0.94343 0.96129 0.95753 0.94133 0.94304 0.94363 0.74840 0.82141
0.75187 0.88150 0.88308 0.85004
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.74 10.85 113.37 1.23 1.97 16
2 O -0.40 -15.38 10.43 -148.98 -1.55 -16.93 16
3 C 0.08 3.12 3.08 31.78 0.10 3.22 16
4 H 0.09 3.20 7.68 -2.39 -0.02 3.18 16
5 C 0.18 9.23 5.15 86.73 0.45 9.68 16
6 N -0.62 -34.20 3.40 -691.88 -2.35 -36.55 16
7 C -0.25 -14.82 10.28 84.03 0.86 -13.96 16
8 H 0.08 4.70 7.83 -2.91 -0.02 4.68 16
9 C -0.06 -3.61 5.49 84.86 0.47 -3.15 16
10 N -0.95 -58.33 10.31 21.65 0.22 -58.11 16
11 Si 0.98 47.12 29.55 68.60 2.03 49.15 16
12 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16
13 H -0.29 -13.83 7.11 99.48 0.71 -13.13 16
14 H -0.27 -12.51 7.11 99.48 0.71 -11.80 16
15 C 0.13 6.13 6.93 86.85 0.60 6.73 16
16 C 0.15 6.17 3.09 46.38 0.14 6.31 16
17 H 0.08 3.74 7.63 -2.38 -0.02 3.73 16
18 N -0.69 -23.67 5.21 -438.95 -2.29 -25.96 16
19 C 0.60 21.81 7.83 86.75 0.68 22.49 16
20 O -0.57 -25.09 16.62 -3.95 -0.07 -25.16 16
21 C -0.05 -1.32 7.13 42.46 0.30 -1.01 16
22 C -0.21 -4.76 10.81 22.41 0.24 -4.52 16
23 C 0.00 0.06 11.46 83.54 0.96 1.02 16
24 N -0.28 -4.25 3.70 -369.45 -1.37 -5.62 16
25 C 0.07 0.30 11.31 127.77 1.44 1.74 16
26 N -0.28 -6.61 11.67 -48.17 -0.56 -7.17 16
27 H 0.10 2.41 8.14 -2.39 -0.02 2.39 16
28 H 0.06 1.41 8.11 -2.39 -0.02 1.39 16
29 H 0.04 1.14 8.14 -2.38 -0.02 1.12 16
30 H 0.02 1.23 7.30 -2.39 -0.02 1.21 16
31 H 0.02 1.36 7.51 -2.39 -0.02 1.35 16
32 H 0.25 14.85 8.31 -92.71 -0.77 14.08 16
33 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16
34 H 0.04 1.85 8.14 -2.39 -0.02 1.83 16
35 H 0.41 11.98 8.26 -92.71 -0.77 11.21 16
36 H 0.16 3.59 8.06 -2.91 -0.02 3.57 16
37 H 0.23 0.67 8.06 -2.91 -0.02 0.64 16
38 H 0.10 0.16 8.14 -2.38 -0.02 0.14 16
39 H 0.10 0.41 8.14 -2.39 -0.02 0.39 16
40 H 0.13 -0.40 8.13 -2.39 -0.02 -0.42 16
Total: -1.00 -82.74 341.33 1.83 -80.92
By element:
Atomic # 1 Polarization: 14.63 SS G_CDS: 0.29 Total: 14.91 kcal
Atomic # 6 Polarization: 23.04 SS G_CDS: 7.47 Total: 30.51 kcal
Atomic # 7 Polarization: -127.07 SS G_CDS: -6.34 Total: -133.41 kcal
Atomic # 8 Polarization: -40.47 SS G_CDS: -1.62 Total: -42.09 kcal
Atomic # 14 Polarization: 47.12 SS G_CDS: 2.03 Total: 49.15 kcal
Total: -82.74 1.83 -80.92 kcal
The number of atoms in the molecule is 40
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001082370271.mol2 40
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 93.661 kcal
(2) G-P(sol) polarization free energy of solvation -82.745 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.916 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.827 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.918 kcal
(6) G-S(sol) free energy of system = (1) + (5) 12.744 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.68 seconds