Wall clock time and date at job start Tue Mar 31 2020 04:29:46
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53001 * 1
3 3 N 1.46503 * 109.47220 * 2 1
4 4 C 1.34254 * 125.75835 * 124.99926 * 3 2 1
5 5 C 1.38037 * 107.42213 * 180.02562 * 4 3 2
6 6 C 1.47427 * 126.41757 * 179.97438 * 5 4 3
7 7 O 1.21602 * 119.99865 * 359.97438 * 6 5 4
8 8 N 1.34780 * 119.99998 * 179.97438 * 6 5 4
9 9 C 1.46505 * 119.99778 * 179.97438 * 8 6 5
10 10 H 1.08996 * 110.77820 * 36.79003 * 9 8 6
11 11 C 1.54327 * 110.71733 * 273.54375 * 9 8 6
12 12 N 1.47022 * 107.27230 * 263.83086 * 11 9 8
13 13 C 1.36929 * 125.64600 * 181.02426 * 12 11 9
14 14 H 1.08004 * 120.00341 * 0.28040 * 13 12 11
15 15 C 1.38815 * 120.00031 * 179.97438 * 13 12 11
16 16 N 1.31617 * 119.99916 * 0.02562 * 15 13 12
17 17 Si 1.86803 * 119.99958 * 180.02562 * 15 13 12
18 18 H 1.48494 * 109.47228 * 0.02562 * 17 15 13
19 19 H 1.48501 * 109.46793 * 120.00365 * 17 15 13
20 20 H 1.48500 * 109.47000 * 240.00457 * 17 15 13
21 21 C 1.47423 * 108.70234 * 1.29219 * 12 11 9
22 22 C 1.55132 * 104.72360 * 335.54986 * 21 12 11
23 23 H 1.09000 * 111.22509 * 279.17880 * 22 21 12
24 24 O 1.42895 * 110.90513 * 155.27806 * 22 21 12
25 25 C 1.41295 * 107.16736 * 0.23891 * 5 4 3
26 26 N 1.30441 * 108.02381 * 359.59373 * 25 5 4
27 27 H 1.09002 * 109.46940 * 300.00497 * 1 2 3
28 28 H 1.08996 * 109.46833 * 60.00164 * 1 2 3
29 29 H 1.09004 * 109.47020 * 180.02562 * 1 2 3
30 30 H 1.09000 * 109.47441 * 239.99648 * 2 1 3
31 31 H 1.08999 * 109.47254 * 119.99542 * 2 1 3
32 32 H 1.08003 * 126.28969 * 359.97235 * 4 3 2
33 33 H 0.97001 * 120.00029 * 0.02562 * 8 6 5
34 34 H 1.09004 * 109.87290 * 144.41696 * 11 9 8
35 35 H 1.08998 * 109.88021 * 23.25165 * 11 9 8
36 36 H 0.97000 * 120.00284 * 179.97438 * 16 15 13
37 37 H 1.08999 * 110.36884 * 94.48325 * 21 12 11
38 38 H 1.09006 * 110.36212 * 216.80310 * 21 12 11
39 39 H 0.96707 * 114.00561 * 67.97433 * 24 22 21
40 40 H 1.08005 * 125.98726 * 179.74360 * 25 5 4
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 7 2.0184 1.3812 0.0000
4 6 2.8690 1.9126 0.8924
5 6 3.0705 3.2311 0.5371
6 6 3.9314 4.2038 1.2344
7 8 4.5487 3.8676 2.2267
8 7 4.0342 5.4657 0.7721
9 6 4.8893 6.4324 1.4655
10 1 5.7897 5.9496 1.8451
11 6 4.1165 7.1232 2.6088
12 7 3.6073 8.3984 2.0833
13 6 2.8840 9.3211 2.7907
14 1 2.6469 9.1409 3.8289
15 6 2.4608 10.4912 2.1753
16 7 2.7544 10.7135 0.9117
17 14 1.4747 11.7504 3.1406
18 1 1.2801 11.2665 4.5309
19 1 2.2086 13.0412 3.1644
20 1 0.1521 11.9447 2.4939
21 6 3.9988 8.5161 0.6669
22 6 5.2534 7.6142 0.5284
23 1 6.1491 8.1279 0.8775
24 8 5.4145 7.1683 -0.8196
25 6 2.2924 3.4757 -0.6167
26 7 1.6764 2.3694 -0.9300
27 1 -0.3633 0.5139 0.8900
28 1 -0.3633 0.5138 -0.8900
29 1 -0.3633 -1.0277 0.0005
30 1 1.8934 -0.5139 -0.8899
31 1 1.8934 -0.5137 0.8900
32 1 3.3133 1.4024 1.7343
33 1 3.5415 5.7339 -0.0192
34 1 4.7857 7.3092 3.4489
35 1 3.2847 6.4946 2.9268
36 1 2.4584 11.5310 0.4815
37 1 3.1976 8.1574 0.0208
38 1 4.2469 9.5500 0.4266
39 1 5.6426 7.8722 -1.4422
40 1 2.2221 4.4136 -1.1477
RHF calculation, no. of doubly occupied orbitals= 55
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001083375867.mol2 40
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 04:29:46
Heat of formation + Delta-G solvation = 24.312315 kcal
Electronic energy + Delta-G solvation = -23676.569629 eV
Core-core repulsion = 20108.190196 eV
Total energy + Delta-G solvation = -3568.379432 eV
No. of doubly occupied orbitals = 55
Molecular weight
(most abundant/longest-lived isotopes) = 294.148 amu
Computer time = 0.68 seconds
Orbital eigenvalues (eV)
-41.37045 -39.24906 -37.52449 -35.03499 -34.71195 -33.62840 -31.65797 -30.61096
-29.77934 -28.25298 -26.99594 -24.62290 -24.06724 -22.79833 -20.76857 -20.43145
-20.11743 -19.52174 -17.95329 -16.97166 -16.75006 -15.94809 -15.78067 -15.51553
-14.80762 -14.70422 -14.29059 -14.16443 -13.89873 -13.59566 -12.98492 -12.83787
-12.82143 -12.63245 -12.42945 -12.30379 -12.19386 -11.78527 -11.30478 -11.06839
-11.00196 -10.90252 -10.86778 -10.15427 -10.01299 -9.83479 -9.64872 -9.47843
-9.16238 -8.78534 -8.70855 -8.39970 -6.89003 -5.70576 -3.12104 1.56471
2.21842 2.25653 3.38144 3.44267 3.46561 3.65246 3.77438 4.20970
4.42643 4.58152 4.63628 4.67637 4.79460 4.87689 5.18672 5.28143
5.32454 5.36508 5.41931 5.50411 5.57313 5.74902 5.76788 5.80789
5.90613 6.19978 6.29045 6.41120 6.58668 6.70727 6.74243 7.09190
7.31101 7.49533 7.56395 7.73281 8.05362 8.09719 8.28244 8.70642
9.16550 9.77046 10.40113 11.33559
Molecular weight = 294.15amu
Principal moments of inertia in cm(-1)
A = 0.019109 B = 0.003682 C = 0.003429
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1464.933976 B = 7601.860456 C = 8163.150362
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.166 4.166
2 C 0.128 3.872
3 N -0.365 5.365
4 C 0.122 3.878
5 C -0.284 4.284
6 C 0.593 3.407
7 O -0.562 6.562
8 N -0.693 5.693
9 C 0.147 3.853
10 H 0.090 0.910
11 C 0.126 3.874
12 N -0.600 5.600
13 C -0.219 4.219
14 H 0.080 0.920
15 C -0.012 4.012
16 N -0.924 5.924
17 Si 0.916 3.084
18 H -0.280 1.280
19 H -0.290 1.290
20 H -0.291 1.291
21 C 0.128 3.872
22 C 0.063 3.937
23 H 0.071 0.929
24 O -0.565 6.565
25 C 0.085 3.915
26 N -0.299 5.299
27 H 0.062 0.938
28 H 0.072 0.928
29 H 0.075 0.925
30 H 0.087 0.913
31 H 0.098 0.902
32 H 0.186 0.814
33 H 0.404 0.596
34 H 0.036 0.964
35 H 0.033 0.967
36 H 0.252 0.748
37 H 0.021 0.979
38 H 0.111 0.889
39 H 0.378 0.622
40 H 0.191 0.809
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 0.451 -17.871 -4.556 18.448
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.224 4.224
2 C 0.007 3.993
3 N -0.145 5.145
4 C -0.029 4.029
5 C -0.299 4.299
6 C 0.380 3.620
7 O -0.442 6.442
8 N -0.343 5.343
9 C 0.041 3.959
10 H 0.108 0.892
11 C -0.001 4.001
12 N -0.328 5.328
13 C -0.347 4.347
14 H 0.098 0.902
15 C -0.207 4.207
16 N -0.573 5.573
17 Si 0.747 3.253
18 H -0.205 1.205
19 H -0.217 1.217
20 H -0.218 1.218
21 C 0.002 3.998
22 C 0.002 3.998
23 H 0.089 0.911
24 O -0.370 6.370
25 C -0.103 4.103
26 N -0.118 5.118
27 H 0.081 0.919
28 H 0.091 0.909
29 H 0.094 0.906
30 H 0.105 0.895
31 H 0.116 0.884
32 H 0.203 0.797
33 H 0.239 0.761
34 H 0.054 0.946
35 H 0.051 0.949
36 H 0.062 0.938
37 H 0.039 0.961
38 H 0.128 0.872
39 H 0.225 0.775
40 H 0.207 0.793
Dipole moment (debyes) X Y Z Total
from point charges -0.212 -19.195 -4.426 19.700
hybrid contribution -0.159 1.739 0.444 1.802
sum -0.371 -17.456 -3.982 17.909
Atomic orbital electron populations
1.22062 0.93499 1.02942 1.03907 1.21779 0.96368 0.77103 1.04057
1.48608 1.34628 1.10536 1.20738 1.22933 0.91870 0.93724 0.94404
1.20335 1.11042 0.95320 1.03210 1.17190 0.80302 0.81342 0.83148
1.90730 1.47713 1.79217 1.26576 1.45433 1.47884 1.09631 1.31319
1.21963 0.93216 0.88116 0.92588 0.89162 1.21768 0.96012 0.88174
0.94147 1.44347 1.63380 1.17032 1.08032 1.19160 1.25216 0.96241
0.94109 0.90236 1.24777 1.01279 0.98366 0.96292 1.69748 1.50864
1.26500 1.10228 0.85966 0.79343 0.81171 0.78848 1.20495 1.21737
1.21755 1.22607 0.90843 1.00632 0.85707 1.23754 0.99829 0.94768
0.81404 0.91130 1.86344 1.93482 1.38765 1.18404 1.24140 0.93713
0.97354 0.95048 1.77118 1.24071 0.97092 1.13556 0.91887 0.90899
0.90603 0.89459 0.88372 0.79693 0.76117 0.94640 0.94915 0.93759
0.96121 0.87170 0.77522 0.79264
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.17 -1.10 10.09 37.16 0.37 -0.73 16
2 C 0.13 0.87 7.21 -4.04 -0.03 0.84 16
3 N -0.37 -4.09 3.65 -60.81 -0.22 -4.31 16
4 C 0.12 1.49 11.25 -16.57 -0.19 1.30 16
5 C -0.28 -4.20 6.13 -105.07 -0.64 -4.85 16
6 C 0.59 10.47 7.81 -12.52 -0.10 10.37 16
7 O -0.56 -11.38 16.63 5.28 0.09 -11.29 16
8 N -0.69 -12.20 4.77 -53.10 -0.25 -12.46 16
9 C 0.15 2.79 3.13 -66.09 -0.21 2.58 16
10 H 0.09 1.69 7.70 -51.93 -0.40 1.29 16
11 C 0.13 2.76 6.98 -3.06 -0.02 2.73 16
12 N -0.60 -15.13 3.39 -169.93 -0.58 -15.71 16
13 C -0.22 -6.05 10.27 -15.06 -0.15 -6.20 16
14 H 0.08 2.15 7.83 -52.48 -0.41 1.74 16
15 C -0.01 -0.33 5.49 -17.43 -0.10 -0.43 16
16 N -0.92 -26.08 10.08 55.49 0.56 -25.52 16
17 Si 0.92 21.87 29.55 -169.99 -5.02 16.85 16
18 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16
19 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16
20 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16
21 C 0.13 2.93 5.62 -2.41 -0.01 2.91 16
22 C 0.06 1.16 4.23 -24.46 -0.10 1.05 16
23 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16
24 O -0.57 -9.00 12.63 -35.23 -0.44 -9.44 16
25 C 0.09 1.16 11.50 -16.98 -0.20 0.97 16
26 N -0.30 -4.02 12.33 30.86 0.38 -3.64 16
27 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16
28 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16
29 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16
30 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16
31 H 0.10 0.42 8.06 -51.93 -0.42 0.00 16
32 H 0.19 1.81 8.06 -52.48 -0.42 1.39 16
33 H 0.40 6.73 7.15 -40.82 -0.29 6.43 16
34 H 0.04 0.77 8.14 -51.93 -0.42 0.34 16
35 H 0.03 0.76 8.04 -51.93 -0.42 0.34 16
36 H 0.25 6.90 8.31 -40.82 -0.34 6.56 16
37 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16
38 H 0.11 2.82 5.85 -51.93 -0.30 2.52 16
39 H 0.38 4.58 9.12 45.56 0.42 5.00 16
40 H 0.19 2.21 7.50 -52.48 -0.39 1.82 16
LS Contribution 338.69 15.07 5.10 5.10
Total: -1.00 -34.05 338.69 -6.50 -40.55
By element:
Atomic # 1 Polarization: 14.04 SS G_CDS: -4.74 Total: 9.30 kcal
Atomic # 6 Polarization: 11.93 SS G_CDS: -1.37 Total: 10.56 kcal
Atomic # 7 Polarization: -61.52 SS G_CDS: -0.11 Total: -61.63 kcal
Atomic # 8 Polarization: -20.37 SS G_CDS: -0.36 Total: -20.73 kcal
Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal
Total LS contribution 5.10 Total: 5.10 kcal
Total: -34.05 -6.50 -40.55 kcal
The number of atoms in the molecule is 40
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001083375867.mol2 40
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 64.865 kcal
(2) G-P(sol) polarization free energy of solvation -34.053 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.813 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.500 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.553 kcal
(6) G-S(sol) free energy of system = (1) + (5) 24.312 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.68 seconds