Wall clock time and date at job start Tue Mar 31 2020 04:29:45
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53001 * 1
3 3 N 1.46503 * 109.47220 * 2 1
4 4 C 1.34254 * 125.75835 * 124.99926 * 3 2 1
5 5 C 1.38037 * 107.42213 * 180.02562 * 4 3 2
6 6 C 1.47427 * 126.41757 * 179.97438 * 5 4 3
7 7 O 1.21602 * 119.99865 * 359.97438 * 6 5 4
8 8 N 1.34780 * 119.99998 * 179.97438 * 6 5 4
9 9 C 1.46505 * 119.99778 * 179.97438 * 8 6 5
10 10 H 1.08996 * 110.77820 * 36.79003 * 9 8 6
11 11 C 1.54327 * 110.71733 * 273.54375 * 9 8 6
12 12 N 1.47022 * 107.27230 * 263.83086 * 11 9 8
13 13 C 1.36929 * 125.64600 * 181.02426 * 12 11 9
14 14 H 1.08004 * 120.00341 * 0.28040 * 13 12 11
15 15 C 1.38815 * 120.00031 * 179.97438 * 13 12 11
16 16 N 1.31617 * 119.99916 * 0.02562 * 15 13 12
17 17 Si 1.86803 * 119.99958 * 180.02562 * 15 13 12
18 18 H 1.48494 * 109.47228 * 0.02562 * 17 15 13
19 19 H 1.48501 * 109.46793 * 120.00365 * 17 15 13
20 20 H 1.48500 * 109.47000 * 240.00457 * 17 15 13
21 21 C 1.47423 * 108.70234 * 1.29219 * 12 11 9
22 22 C 1.55132 * 104.72360 * 335.54986 * 21 12 11
23 23 H 1.09000 * 111.22509 * 279.17880 * 22 21 12
24 24 O 1.42895 * 110.90513 * 155.27806 * 22 21 12
25 25 C 1.41295 * 107.16736 * 0.23891 * 5 4 3
26 26 N 1.30441 * 108.02381 * 359.59373 * 25 5 4
27 27 H 1.09002 * 109.46940 * 300.00497 * 1 2 3
28 28 H 1.08996 * 109.46833 * 60.00164 * 1 2 3
29 29 H 1.09004 * 109.47020 * 180.02562 * 1 2 3
30 30 H 1.09000 * 109.47441 * 239.99648 * 2 1 3
31 31 H 1.08999 * 109.47254 * 119.99542 * 2 1 3
32 32 H 1.08003 * 126.28969 * 359.97235 * 4 3 2
33 33 H 0.97001 * 120.00029 * 0.02562 * 8 6 5
34 34 H 1.09004 * 109.87290 * 144.41696 * 11 9 8
35 35 H 1.08998 * 109.88021 * 23.25165 * 11 9 8
36 36 H 0.97000 * 120.00284 * 179.97438 * 16 15 13
37 37 H 1.08999 * 110.36884 * 94.48325 * 21 12 11
38 38 H 1.09006 * 110.36212 * 216.80310 * 21 12 11
39 39 H 0.96707 * 114.00561 * 67.97433 * 24 22 21
40 40 H 1.08005 * 125.98726 * 179.74360 * 25 5 4
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 7 2.0184 1.3812 0.0000
4 6 2.8690 1.9126 0.8924
5 6 3.0705 3.2311 0.5371
6 6 3.9314 4.2038 1.2344
7 8 4.5487 3.8676 2.2267
8 7 4.0342 5.4657 0.7721
9 6 4.8893 6.4324 1.4655
10 1 5.7897 5.9496 1.8451
11 6 4.1165 7.1232 2.6088
12 7 3.6073 8.3984 2.0833
13 6 2.8840 9.3211 2.7907
14 1 2.6469 9.1409 3.8289
15 6 2.4608 10.4912 2.1753
16 7 2.7544 10.7135 0.9117
17 14 1.4747 11.7504 3.1406
18 1 1.2801 11.2665 4.5309
19 1 2.2086 13.0412 3.1644
20 1 0.1521 11.9447 2.4939
21 6 3.9988 8.5161 0.6669
22 6 5.2534 7.6142 0.5284
23 1 6.1491 8.1279 0.8775
24 8 5.4145 7.1683 -0.8196
25 6 2.2924 3.4757 -0.6167
26 7 1.6764 2.3694 -0.9300
27 1 -0.3633 0.5139 0.8900
28 1 -0.3633 0.5138 -0.8900
29 1 -0.3633 -1.0277 0.0005
30 1 1.8934 -0.5139 -0.8899
31 1 1.8934 -0.5137 0.8900
32 1 3.3133 1.4024 1.7343
33 1 3.5415 5.7339 -0.0192
34 1 4.7857 7.3092 3.4489
35 1 3.2847 6.4946 2.9268
36 1 2.4584 11.5310 0.4815
37 1 3.1976 8.1574 0.0208
38 1 4.2469 9.5500 0.4266
39 1 5.6426 7.8722 -1.4422
40 1 2.2221 4.4136 -1.1477
RHF calculation, no. of doubly occupied orbitals= 55
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001083375867.mol2 40
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 04:29:45
Heat of formation + Delta-G solvation = -2.148250 kcal
Electronic energy + Delta-G solvation = -23677.717045 eV
Core-core repulsion = 20108.190196 eV
Total energy + Delta-G solvation = -3569.526849 eV
No. of doubly occupied orbitals = 55
Molecular weight
(most abundant/longest-lived isotopes) = 294.148 amu
Computer time = 0.69 seconds
Orbital eigenvalues (eV)
-42.36619 -40.71287 -39.05124 -36.60485 -35.50946 -35.18848 -33.48793 -31.56095
-30.92763 -29.85950 -28.69064 -26.41530 -24.93703 -23.97640 -22.25736 -21.74229
-21.40130 -20.92964 -19.17866 -18.75553 -18.18711 -17.20842 -16.98729 -16.65541
-16.50821 -15.87901 -15.61822 -15.47688 -15.20776 -14.76186 -14.60438 -14.42596
-14.04401 -13.85808 -13.77111 -13.36364 -13.15389 -12.98136 -12.84177 -12.73438
-12.66340 -12.46839 -11.99618 -11.95996 -11.89227 -11.56890 -10.88610 -10.79700
-10.72553 -10.57658 -10.08402 -9.61882 -8.91280 -7.78848 -5.23489 0.55605
1.15055 1.41815 1.48386 1.48710 1.59143 2.31749 2.48293 2.50542
3.14626 3.32142 3.47555 3.72003 3.80242 3.84655 4.02913 4.06409
4.08416 4.14305 4.36226 4.36533 4.43100 4.56111 4.67487 4.72293
4.80387 4.88821 4.91567 5.00541 5.21671 5.40296 5.44112 5.48927
5.60935 5.74938 5.91284 6.26720 6.49397 6.69998 6.91676 7.09702
7.33859 7.73948 8.36575 9.22399
Molecular weight = 294.15amu
Principal moments of inertia in cm(-1)
A = 0.019109 B = 0.003682 C = 0.003429
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1464.933976 B = 7601.860456 C = 8163.150362
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.162 4.162
2 C 0.116 3.884
3 N -0.356 5.356
4 C 0.136 3.864
5 C -0.316 4.316
6 C 0.593 3.407
7 O -0.593 6.593
8 N -0.693 5.693
9 C 0.154 3.846
10 H 0.099 0.901
11 C 0.127 3.873
12 N -0.618 5.618
13 C -0.240 4.240
14 H 0.077 0.923
15 C -0.060 4.060
16 N -0.943 5.943
17 Si 0.979 3.021
18 H -0.271 1.271
19 H -0.288 1.288
20 H -0.292 1.292
21 C 0.135 3.865
22 C 0.088 3.912
23 H 0.084 0.916
24 O -0.561 6.561
25 C 0.082 3.918
26 N -0.317 5.317
27 H 0.050 0.950
28 H 0.052 0.948
29 H 0.104 0.896
30 H 0.102 0.898
31 H 0.132 0.868
32 H 0.212 0.788
33 H 0.408 0.592
34 H 0.039 0.961
35 H 0.016 0.984
36 H 0.249 0.751
37 H 0.000 1.000
38 H 0.084 0.916
39 H 0.397 0.603
40 H 0.199 0.801
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 0.550 -19.503 -4.605 20.047
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.220 4.220
2 C -0.003 4.003
3 N -0.135 5.135
4 C -0.017 4.017
5 C -0.331 4.331
6 C 0.382 3.618
7 O -0.475 6.475
8 N -0.342 5.342
9 C 0.048 3.952
10 H 0.116 0.884
11 C 0.001 3.999
12 N -0.345 5.345
13 C -0.369 4.369
14 H 0.095 0.905
15 C -0.253 4.253
16 N -0.593 5.593
17 Si 0.808 3.192
18 H -0.196 1.196
19 H -0.215 1.215
20 H -0.219 1.219
21 C 0.010 3.990
22 C 0.027 3.973
23 H 0.102 0.898
24 O -0.368 6.368
25 C -0.106 4.106
26 N -0.137 5.137
27 H 0.069 0.931
28 H 0.071 0.929
29 H 0.123 0.877
30 H 0.121 0.879
31 H 0.150 0.850
32 H 0.228 0.772
33 H 0.243 0.757
34 H 0.057 0.943
35 H 0.034 0.966
36 H 0.059 0.941
37 H 0.018 0.982
38 H 0.102 0.898
39 H 0.247 0.753
40 H 0.216 0.784
Dipole moment (debyes) X Y Z Total
from point charges -0.122 -20.854 -4.517 21.338
hybrid contribution -0.239 2.135 0.432 2.191
sum -0.361 -18.720 -4.085 19.164
Atomic orbital electron populations
1.22037 0.93389 1.04311 1.02247 1.22277 0.96478 0.75027 1.06505
1.49011 1.33521 1.11497 1.19492 1.23312 0.90953 0.92963 0.94518
1.20228 1.12416 0.96039 1.04414 1.17562 0.80015 0.81456 0.82731
1.90699 1.49162 1.79709 1.27954 1.45401 1.47831 1.09613 1.31316
1.21790 0.93154 0.88368 0.91899 0.88358 1.21818 0.95660 0.86975
0.95486 1.44574 1.63314 1.17761 1.08892 1.19445 1.25874 0.97154
0.94446 0.90537 1.25546 1.02410 1.00006 0.97322 1.69966 1.51399
1.26679 1.11258 0.84996 0.77597 0.78695 0.77923 1.19612 1.21487
1.21938 1.22414 0.92200 1.00071 0.84362 1.23342 0.97942 0.93300
0.82744 0.89800 1.86322 1.93323 1.39568 1.17545 1.24303 0.93444
0.97959 0.94855 1.77080 1.24492 0.97553 1.14615 0.93110 0.92914
0.87737 0.87936 0.85035 0.77182 0.75666 0.94348 0.96586 0.94125
0.98216 0.89792 0.75282 0.78415
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -1.80 10.09 71.98 0.73 -1.08 16
2 C 0.12 1.24 7.21 86.38 0.62 1.86 16
3 N -0.36 -7.26 3.65 -346.30 -1.26 -8.52 16
4 C 0.14 3.06 11.25 84.27 0.95 4.01 16
5 C -0.32 -9.11 6.13 -20.15 -0.12 -9.23 16
6 C 0.59 20.75 7.81 86.66 0.68 21.43 16
7 O -0.59 -23.77 16.63 -4.04 -0.07 -23.83 16
8 N -0.69 -24.22 4.77 -440.16 -2.10 -26.32 16
9 C 0.15 5.78 3.13 46.18 0.14 5.92 16
10 H 0.10 3.59 7.70 -2.39 -0.02 3.57 16
11 C 0.13 5.62 6.98 86.73 0.61 6.23 16
12 N -0.62 -31.64 3.39 -691.53 -2.35 -33.99 16
13 C -0.24 -13.47 10.27 84.04 0.86 -12.61 16
14 H 0.08 4.20 7.83 -2.91 -0.02 4.18 16
15 C -0.06 -3.33 5.49 84.86 0.47 -2.87 16
16 N -0.94 -54.01 10.08 21.65 0.22 -53.79 16
17 Si 0.98 45.21 29.55 68.60 2.03 47.24 16
18 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16
19 H -0.29 -13.13 7.11 99.48 0.71 -12.42 16
20 H -0.29 -13.51 7.11 99.48 0.71 -12.80 16
21 C 0.13 6.27 5.62 86.93 0.49 6.76 16
22 C 0.09 3.15 4.23 32.06 0.14 3.29 16
23 H 0.08 2.85 8.14 -2.39 -0.02 2.83 16
24 O -0.56 -16.91 12.63 -148.98 -1.88 -18.79 16
25 C 0.08 2.19 11.50 85.65 0.99 3.17 16
26 N -0.32 -8.21 12.33 -56.27 -0.69 -8.91 16
27 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16
28 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16
29 H 0.10 0.56 8.14 -2.39 -0.02 0.55 16
30 H 0.10 0.85 8.14 -2.39 -0.02 0.83 16
31 H 0.13 0.57 8.06 -2.39 -0.02 0.55 16
32 H 0.21 3.53 8.06 -2.91 -0.02 3.51 16
33 H 0.41 13.55 7.15 -92.71 -0.66 12.89 16
34 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16
35 H 0.02 0.76 8.04 -2.39 -0.02 0.74 16
36 H 0.25 13.81 8.31 -92.71 -0.77 13.04 16
37 H 0.00 0.00 8.14 -2.39 -0.02 -0.02 16
38 H 0.08 4.38 5.85 -2.38 -0.01 4.37 16
39 H 0.40 8.84 9.12 -74.05 -0.68 8.17 16
40 H 0.20 4.63 7.50 -2.91 -0.02 4.61 16
Total: -1.00 -73.84 338.69 0.17 -73.67
By element:
Atomic # 1 Polarization: 26.63 SS G_CDS: -0.26 Total: 26.37 kcal
Atomic # 6 Polarization: 20.34 SS G_CDS: 6.54 Total: 26.88 kcal
Atomic # 7 Polarization: -125.34 SS G_CDS: -6.19 Total: -131.53 kcal
Atomic # 8 Polarization: -40.68 SS G_CDS: -1.95 Total: -42.63 kcal
Atomic # 14 Polarization: 45.21 SS G_CDS: 2.03 Total: 47.24 kcal
Total: -73.84 0.17 -73.67 kcal
The number of atoms in the molecule is 40
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001083375867.mol2 40
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 71.521 kcal
(2) G-P(sol) polarization free energy of solvation -73.838 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.317 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.169 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.670 kcal
(6) G-S(sol) free energy of system = (1) + (5) -2.148 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.69 seconds