Wall clock time and date at job start Tue Mar 31 2020 04:39:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 N 1.40085 * 126.03660 * 2 1 4 4 C 1.30835 * 108.20797 * 180.02562 * 3 2 1 5 5 C 1.39874 * 108.19735 * 0.02562 * 4 3 2 6 6 C 1.34943 * 126.03758 * 179.69359 * 2 1 3 7 7 C 1.50698 * 126.12658 * 359.97438 * 6 2 1 8 8 C 1.50693 * 109.47458 * 265.00150 * 7 6 2 9 9 O 1.21282 * 119.99870 * 359.97438 * 8 7 6 10 10 N 1.34778 * 120.00258 * 180.02562 * 8 7 6 11 11 C 1.46506 * 120.00110 * 180.02562 * 10 8 7 12 12 H 1.08999 * 110.63629 * 36.68341 * 11 10 8 13 13 C 1.54325 * 110.71723 * 273.54575 * 11 10 8 14 14 N 1.47026 * 107.26965 * 219.44304 * 13 11 10 15 15 C 1.36928 * 125.64809 * 178.97826 * 14 13 11 16 16 H 1.08007 * 120.00392 * 349.93627 * 15 14 13 17 17 C 1.38815 * 120.00142 * 169.94034 * 15 14 13 18 18 N 1.31617 * 119.99825 * 350.42598 * 17 15 14 19 19 Si 1.86806 * 120.00159 * 170.41801 * 17 15 14 20 20 H 1.48495 * 109.46842 * 94.14099 * 19 17 15 21 21 H 1.48502 * 109.46898 * 214.14329 * 19 17 15 22 22 H 1.48496 * 109.46773 * 334.14160 * 19 17 15 23 23 C 1.47425 * 108.70098 * 358.93864 * 14 13 11 24 24 C 1.54913 * 104.83211 * 24.13486 * 23 14 13 25 25 H 1.09001 * 110.99996 * 204.91717 * 24 23 14 26 26 O 1.42896 * 111.00998 * 81.06277 * 24 23 14 27 27 H 1.08995 * 109.47375 * 90.02324 * 1 2 3 28 28 H 1.09001 * 109.47040 * 210.02332 * 1 2 3 29 29 H 1.09002 * 109.47018 * 330.02153 * 1 2 3 30 30 H 1.07990 * 125.90044 * 179.97438 * 4 3 2 31 31 H 1.08004 * 126.03582 * 179.97438 * 5 4 3 32 32 H 1.09004 * 109.47062 * 25.00426 * 7 6 2 33 33 H 1.09005 * 109.47297 * 144.99906 * 7 6 2 34 34 H 0.97002 * 119.99725 * 359.97438 * 10 8 7 35 35 H 1.08998 * 109.88305 * 338.85644 * 13 11 10 36 36 H 1.08997 * 109.88350 * 99.87411 * 13 11 10 37 37 H 0.97003 * 120.00044 * 180.02562 * 18 17 15 38 38 H 1.09001 * 110.36380 * 142.96232 * 23 14 13 39 39 H 1.08992 * 110.37005 * 265.29035 * 23 14 13 40 40 H 0.96696 * 113.99880 * 67.80078 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2891 1.1328 0.0000 4 6 3.5347 0.7322 -0.0006 5 6 3.5437 -0.6665 -0.0015 6 6 2.2589 -1.0912 0.0058 7 6 1.7973 -2.5257 0.0141 8 6 1.7618 -3.0339 1.4323 9 8 2.0804 -2.3033 2.3464 10 7 1.3770 -4.3007 1.6848 11 6 1.3419 -4.7945 3.0636 12 1 1.0131 -4.0095 3.7446 13 6 2.7235 -5.3387 3.4839 14 7 2.4905 -6.5485 4.2863 15 6 3.4625 -7.3424 4.8338 16 1 4.4969 -7.1966 4.5595 17 6 3.1185 -8.3348 5.7415 18 7 1.8936 -8.3933 6.2196 19 14 4.3938 -9.5872 6.2841 20 1 5.0349 -9.1275 7.5422 21 1 3.7340 -10.8974 6.5148 22 1 5.4262 -9.7323 5.2267 23 6 1.0370 -6.7647 4.4043 24 6 0.4277 -6.0431 3.1764 25 1 -0.6061 -5.7544 3.3662 26 8 0.5235 -6.8557 2.0049 27 1 -0.3634 -0.0004 -1.0276 28 1 -0.3633 -0.8898 0.5142 29 1 -0.3633 0.8902 0.5135 30 1 4.4053 1.3711 -0.0011 31 1 4.4211 -1.2963 -0.0025 32 1 0.7993 -2.5887 -0.4196 33 1 2.4872 -3.1328 -0.5723 34 1 1.1225 -4.8851 0.9536 35 1 3.3087 -5.5880 2.5988 36 1 3.2505 -4.5926 4.0786 37 1 1.6533 -9.0865 6.8542 38 1 0.8079 -7.8298 4.3704 39 1 0.6617 -6.3243 5.3280 40 1 -0.0304 -7.6479 2.0294 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001083432106.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:39:09 Heat of formation + Delta-G solvation = 28.697855 kcal Electronic energy + Delta-G solvation = -23700.189937 eV Core-core repulsion = 20132.000676 eV Total energy + Delta-G solvation = -3568.189261 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.148 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.34550 -39.61451 -37.88730 -34.81140 -33.99937 -33.52555 -32.37192 -31.57720 -28.80043 -27.82008 -26.85025 -26.61277 -24.40633 -21.35232 -21.16294 -20.63702 -19.85312 -19.59705 -17.55614 -17.06309 -16.84888 -16.53050 -15.40777 -15.34792 -15.18570 -14.84220 -14.46145 -14.09726 -13.90072 -13.75000 -13.09013 -13.00866 -12.84818 -12.74669 -12.64869 -12.53645 -12.11111 -11.84501 -11.38220 -11.02630 -10.84659 -10.70611 -10.65972 -10.46452 -10.15012 -9.87210 -9.85193 -9.36613 -9.25904 -8.78309 -8.64454 -8.53476 -6.83777 -5.79679 -3.11058 1.75368 2.43551 2.71016 2.79502 3.36735 3.39038 3.44075 3.46800 4.31027 4.43848 4.46264 4.51320 4.78400 4.92674 4.98460 5.08783 5.15507 5.25900 5.28277 5.29862 5.43976 5.62295 5.67512 5.70475 5.86612 5.97856 6.09248 6.20256 6.48305 6.62474 6.70926 6.89532 6.92518 7.23638 7.37494 7.65600 7.68726 7.72457 8.01831 8.20760 8.37885 9.14105 9.75975 10.41796 11.33941 Molecular weight = 294.15amu Principal moments of inertia in cm(-1) A = 0.028776 B = 0.003301 C = 0.003098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 972.804508 B = 8480.830683 C = 9037.006606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.100 3.900 2 N -0.369 5.369 3 N -0.299 5.299 4 C 0.047 3.953 5 C -0.257 4.257 6 C 0.107 3.893 7 C -0.081 4.081 8 C 0.509 3.491 9 O -0.530 6.530 10 N -0.707 5.707 11 C 0.145 3.855 12 H 0.099 0.901 13 C 0.132 3.868 14 N -0.595 5.595 15 C -0.224 4.224 16 H 0.077 0.923 17 C -0.008 4.008 18 N -0.923 5.923 19 Si 0.913 3.087 20 H -0.289 1.289 21 H -0.290 1.290 22 H -0.280 1.280 23 C 0.149 3.851 24 C 0.067 3.933 25 H 0.060 0.940 26 O -0.561 6.561 27 H 0.074 0.926 28 H 0.084 0.916 29 H 0.089 0.911 30 H 0.182 0.818 31 H 0.146 0.854 32 H 0.102 0.898 33 H 0.121 0.879 34 H 0.408 0.592 35 H 0.029 0.971 36 H 0.028 0.972 37 H 0.253 0.747 38 H 0.078 0.922 39 H 0.036 0.964 40 H 0.379 0.621 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.872 10.547 -15.204 19.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.042 4.042 2 N -0.152 5.152 3 N -0.121 5.121 4 C -0.139 4.139 5 C -0.286 4.286 6 C -0.021 4.021 7 C -0.122 4.122 8 C 0.293 3.707 9 O -0.406 6.406 10 N -0.359 5.359 11 C 0.039 3.961 12 H 0.117 0.883 13 C 0.005 3.995 14 N -0.322 5.322 15 C -0.352 4.352 16 H 0.094 0.906 17 C -0.205 4.205 18 N -0.571 5.571 19 Si 0.743 3.257 20 H -0.216 1.216 21 H -0.216 1.216 22 H -0.206 1.206 23 C 0.023 3.977 24 C 0.006 3.994 25 H 0.078 0.922 26 O -0.367 6.367 27 H 0.092 0.908 28 H 0.102 0.898 29 H 0.108 0.892 30 H 0.199 0.801 31 H 0.164 0.836 32 H 0.121 0.879 33 H 0.139 0.861 34 H 0.243 0.757 35 H 0.047 0.953 36 H 0.046 0.954 37 H 0.063 0.937 38 H 0.096 0.904 39 H 0.054 0.946 40 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges -6.148 12.392 -14.568 20.089 hybrid contribution 0.669 -2.123 0.337 2.251 sum -5.479 10.269 -14.231 18.384 Atomic orbital electron populations 1.21818 0.74729 1.04635 1.02977 1.48368 1.06330 1.03342 1.57122 1.77313 1.01917 1.07760 1.25085 1.23770 0.95164 0.95035 0.99883 1.21197 0.96194 0.95093 1.16106 1.20250 0.91405 0.88952 1.01530 1.20277 1.04495 0.90983 0.96474 1.20297 0.77686 0.82208 0.90462 1.90768 1.47159 1.56383 1.46286 1.45813 1.67782 1.12373 1.09962 1.22120 0.97198 0.94183 0.82563 0.88269 1.21591 0.93559 0.89495 0.94871 1.44263 1.01899 1.25565 1.60459 1.19040 0.88248 1.09540 1.18363 0.90555 1.24799 0.97032 1.00381 0.98239 1.69914 1.17862 1.35392 1.33892 0.86092 0.80331 0.80838 0.78460 1.21579 1.21627 1.20573 1.22065 0.84135 0.99916 0.91599 1.23595 0.96749 0.91011 0.88028 0.92206 1.86242 1.71269 1.39305 1.39905 0.90782 0.89769 0.89230 0.80062 0.83594 0.87931 0.86087 0.75661 0.95270 0.95363 0.93702 0.90428 0.94566 0.77355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.84 11.07 59.85 0.66 1.51 16 2 N -0.37 -4.64 4.01 -63.89 -0.26 -4.89 16 3 N -0.30 -4.20 12.58 30.62 0.39 -3.81 16 4 C 0.05 0.58 12.03 -17.36 -0.21 0.37 16 5 C -0.26 -3.26 10.72 -40.01 -0.43 -3.69 16 6 C 0.11 1.33 5.42 -82.27 -0.45 0.88 16 7 C -0.08 -0.80 5.80 -29.04 -0.17 -0.96 16 8 C 0.51 7.21 7.82 -10.99 -0.09 7.13 16 9 O -0.53 -9.96 15.76 5.56 0.09 -9.87 16 10 N -0.71 -9.94 5.09 -52.03 -0.26 -10.20 16 11 C 0.14 2.56 3.12 -66.09 -0.21 2.35 16 12 H 0.10 1.84 7.69 -51.93 -0.40 1.44 16 13 C 0.13 2.89 6.99 -3.06 -0.02 2.87 16 14 N -0.60 -15.16 3.39 -170.07 -0.58 -15.73 16 15 C -0.22 -6.27 10.24 -15.06 -0.15 -6.42 16 16 H 0.08 2.10 7.85 -52.48 -0.41 1.69 16 17 C -0.01 -0.24 5.40 -17.43 -0.09 -0.33 16 18 N -0.92 -26.46 10.68 55.49 0.59 -25.87 16 19 Si 0.91 21.97 29.56 -169.99 -5.03 16.94 16 20 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 21 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 22 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 23 C 0.15 3.38 5.16 -2.53 -0.01 3.37 16 24 C 0.07 1.13 4.28 -24.58 -0.11 1.03 16 25 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 26 O -0.56 -8.62 12.23 -35.23 -0.43 -9.05 16 27 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.08 0.63 7.53 -51.93 -0.39 0.23 16 29 H 0.09 0.72 8.14 -51.93 -0.42 0.29 16 30 H 0.18 1.63 8.06 -52.49 -0.42 1.21 16 31 H 0.15 1.64 8.06 -52.48 -0.42 1.21 16 32 H 0.10 0.70 7.49 -51.93 -0.39 0.31 16 33 H 0.12 0.93 8.14 -51.93 -0.42 0.51 16 34 H 0.41 4.88 7.57 -40.82 -0.31 4.58 16 35 H 0.03 0.65 8.03 -51.93 -0.42 0.23 16 36 H 0.03 0.67 8.14 -51.93 -0.42 0.24 16 37 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 38 H 0.08 1.93 6.94 -51.93 -0.36 1.57 16 39 H 0.04 0.90 8.07 -51.93 -0.42 0.48 16 40 H 0.38 4.53 9.12 45.56 0.42 4.94 16 LS Contribution 338.09 15.07 5.09 5.09 Total: -1.00 -36.10 338.09 -6.44 -42.54 By element: Atomic # 1 Polarization: 11.54 SS G_CDS: -4.78 Total: 6.76 kcal Atomic # 6 Polarization: 9.37 SS G_CDS: -1.27 Total: 8.10 kcal Atomic # 7 Polarization: -60.39 SS G_CDS: -0.12 Total: -60.51 kcal Atomic # 8 Polarization: -18.58 SS G_CDS: -0.34 Total: -18.92 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.03 Total: 16.94 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -36.10 -6.44 -42.54 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083432106.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.235 kcal (2) G-P(sol) polarization free energy of solvation -36.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.538 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds