Wall clock time and date at job start Tue Mar 31 2020 02:56:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 N 1.30853 * 125.42212 * 2 1 4 4 C 1.33316 * 109.69114 * 179.97438 * 3 2 1 5 5 C 1.36662 * 107.78246 * 359.97438 * 4 3 2 6 6 C 1.46769 * 126.84299 * 179.97438 * 5 4 3 7 7 O 1.21682 * 119.99986 * 184.95293 * 6 5 4 8 8 N 1.34771 * 119.99977 * 4.94825 * 6 5 4 9 9 C 1.46505 * 119.99792 * 175.01633 * 8 6 5 10 10 H 1.08999 * 110.64181 * 36.69376 * 9 8 6 11 11 C 1.54320 * 110.72183 * 273.54934 * 9 8 6 12 12 N 1.47024 * 107.27222 * 263.82764 * 11 9 8 13 13 C 1.36930 * 125.65158 * 181.02251 * 12 11 9 14 14 H 1.08002 * 119.99819 * 11.13951 * 13 12 11 15 15 C 1.38809 * 120.00548 * 191.14177 * 13 12 11 16 16 N 1.31628 * 119.99679 * 8.97990 * 15 13 12 17 17 Si 1.86794 * 120.00390 * 188.98534 * 15 13 12 18 18 H 1.48506 * 109.47345 * 84.99392 * 17 15 13 19 19 H 1.48500 * 109.47156 * 324.99381 * 17 15 13 20 20 H 1.48509 * 109.47374 * 204.99342 * 17 15 13 21 21 C 1.47424 * 108.70265 * 1.29153 * 12 11 9 22 22 C 1.55135 * 104.72027 * 335.54995 * 21 12 11 23 23 H 1.08999 * 111.19060 * 279.19216 * 22 21 12 24 24 O 1.42905 * 110.93737 * 155.29275 * 22 21 12 25 25 N 1.34495 * 125.41800 * 180.22969 * 2 1 3 26 26 C 1.46504 * 126.47496 * 0.05454 * 25 2 1 27 27 H 1.09005 * 109.47218 * 90.02287 * 1 2 3 28 28 H 1.09001 * 109.47538 * 210.02628 * 1 2 3 29 29 H 1.09005 * 109.47256 * 330.02413 * 1 2 3 30 30 H 1.08000 * 126.10991 * 180.02562 * 4 3 2 31 31 H 0.97000 * 119.99999 * 355.02229 * 8 6 5 32 32 H 1.08999 * 109.88058 * 144.41245 * 11 9 8 33 33 H 1.08993 * 109.88620 * 23.24671 * 11 9 8 34 34 H 0.97005 * 119.99765 * 179.97438 * 16 15 13 35 35 H 1.09005 * 110.37248 * 94.47888 * 21 12 11 36 36 H 1.08998 * 110.36652 * 216.80209 * 21 12 11 37 37 H 0.96699 * 114.00357 * 67.95822 * 24 22 21 38 38 H 1.08997 * 109.47413 * 273.70567 * 26 25 2 39 39 H 1.09003 * 109.46597 * 33.70174 * 26 25 2 40 40 H 1.09000 * 109.47205 * 153.70048 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2653 1.0663 0.0000 4 6 3.5486 0.7049 0.0006 5 6 3.5975 -0.6609 0.0015 6 6 4.8028 -1.4983 0.0019 7 8 4.7034 -2.7077 -0.0882 8 7 6.0197 -0.9278 0.1019 9 6 7.2154 -1.7672 0.2122 10 1 7.1140 -2.6629 -0.4005 11 6 7.4862 -2.1409 1.6848 12 7 8.4731 -1.1827 2.2039 13 6 8.9958 -1.1822 3.4695 14 1 8.8290 -2.0257 4.1230 15 6 9.7401 -0.0975 3.9127 16 7 9.7968 1.0010 3.1899 17 14 10.6612 -0.1969 5.5348 18 1 11.9846 -0.8335 5.3143 19 1 9.8767 -1.0074 6.5006 20 1 10.8545 1.1713 6.0789 21 6 8.8020 -0.2187 1.1382 22 6 8.4854 -0.9681 -0.1827 23 1 9.2986 -1.6389 -0.4598 24 8 8.2032 -0.0465 -1.2378 25 7 2.2864 -1.0961 -0.0044 26 6 1.8311 -2.4885 -0.0111 27 1 -0.3634 -0.0004 -1.0277 28 1 -0.3634 -0.8897 0.5142 29 1 -0.3634 0.8902 0.5135 30 1 4.3978 1.3722 0.0011 31 1 6.1039 0.0385 0.1009 32 1 7.8862 -3.1532 1.7428 33 1 6.5634 -2.0712 2.2607 34 1 10.3166 1.7592 3.4998 35 1 8.1822 0.6733 1.2289 36 1 9.8584 0.0466 1.1794 37 1 8.9671 0.4758 -1.5186 38 1 1.6542 -2.8179 1.0127 39 1 0.9059 -2.5655 -0.5824 40 1 2.5941 -3.1181 -0.4687 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001083728288.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 02:56:57 Heat of formation + Delta-G solvation = -18.535835 kcal Electronic energy + Delta-G solvation = -24085.372027 eV Core-core repulsion = 20515.134560 eV Total energy + Delta-G solvation = -3570.237468 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.148 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.31293 -40.90828 -39.19767 -36.64647 -35.66315 -34.90070 -33.69782 -32.75010 -30.41805 -29.14953 -28.40581 -27.62763 -26.29416 -24.16291 -22.36835 -22.05437 -21.20494 -20.79450 -19.17665 -18.67739 -18.28561 -17.36616 -17.20986 -16.89964 -16.64198 -15.96016 -15.76948 -15.47300 -14.88683 -14.72636 -14.66369 -14.21941 -14.17998 -14.08774 -13.88807 -13.69882 -13.29847 -13.18281 -13.15381 -12.95947 -12.77819 -12.66465 -12.07334 -11.92213 -11.77843 -11.45837 -10.98592 -10.83990 -10.76402 -10.70586 -10.19587 -9.51397 -8.91315 -7.91367 -5.27460 0.21174 1.41329 1.47042 1.48020 1.56241 1.72542 2.21822 2.28919 2.47007 3.07063 3.28524 3.38416 3.61829 3.65784 3.79939 3.87685 3.95007 3.98113 4.29825 4.31872 4.36082 4.50821 4.58344 4.60478 4.69192 4.73152 4.84324 4.87575 5.04112 5.12859 5.33460 5.39686 5.46208 5.47731 5.65233 6.07259 6.14428 6.41508 6.82413 6.87370 7.03555 7.08304 7.69231 8.34369 9.19532 Molecular weight = 294.15amu Principal moments of inertia in cm(-1) A = 0.019539 B = 0.003992 C = 0.003800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1432.685913 B = 7011.725483 C = 7367.033109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C 0.230 3.770 3 N -0.527 5.527 4 C 0.039 3.961 5 C -0.110 4.110 6 C 0.596 3.404 7 O -0.578 6.578 8 N -0.683 5.683 9 C 0.155 3.845 10 H 0.106 0.894 11 C 0.126 3.874 12 N -0.616 5.616 13 C -0.250 4.250 14 H 0.076 0.924 15 C -0.054 4.054 16 N -0.942 5.942 17 Si 0.977 3.023 18 H -0.281 1.281 19 H -0.274 1.274 20 H -0.293 1.293 21 C 0.157 3.843 22 C 0.088 3.912 23 H 0.092 0.908 24 O -0.561 6.561 25 N -0.429 5.429 26 C 0.061 3.939 27 H 0.104 0.896 28 H 0.101 0.899 29 H 0.099 0.901 30 H 0.186 0.814 31 H 0.410 0.590 32 H 0.046 0.954 33 H 0.012 0.988 34 H 0.250 0.750 35 H 0.011 0.989 36 H 0.046 0.954 37 H 0.399 0.601 38 H 0.087 0.913 39 H 0.124 0.876 40 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.848 -3.846 -10.049 18.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.032 4.032 3 N -0.246 5.246 4 C -0.115 4.115 5 C -0.226 4.226 6 C 0.384 3.616 7 O -0.460 6.460 8 N -0.332 5.332 9 C 0.050 3.950 10 H 0.124 0.876 11 C 0.000 4.000 12 N -0.344 5.344 13 C -0.379 4.379 14 H 0.094 0.906 15 C -0.248 4.248 16 N -0.590 5.590 17 Si 0.805 3.195 18 H -0.208 1.208 19 H -0.200 1.200 20 H -0.220 1.220 21 C 0.032 3.968 22 C 0.028 3.972 23 H 0.110 0.890 24 O -0.368 6.368 25 N -0.110 5.110 26 C -0.080 4.080 27 H 0.123 0.877 28 H 0.119 0.881 29 H 0.117 0.883 30 H 0.203 0.797 31 H 0.247 0.753 32 H 0.064 0.936 33 H 0.030 0.970 34 H 0.059 0.941 35 H 0.028 0.972 36 H 0.064 0.936 37 H 0.249 0.751 38 H 0.106 0.894 39 H 0.143 0.857 40 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -15.730 -4.233 -9.926 19.076 hybrid contribution 1.800 0.119 1.132 2.130 sum -13.930 -4.114 -8.794 16.980 Atomic orbital electron populations 1.20516 0.80767 1.05867 1.05515 1.24400 0.97694 0.80422 1.00705 1.70117 1.02303 1.29508 1.22693 1.22899 0.95750 0.91543 1.01340 1.20624 0.85915 0.94990 1.21100 1.16914 0.82568 0.86407 0.75752 1.90708 1.87168 1.14968 1.53192 1.45283 1.04368 1.11083 1.72447 1.21888 0.83416 0.94283 0.95432 0.87589 1.21838 0.91843 0.93880 0.92445 1.44542 1.47344 1.32580 1.09925 1.19343 1.27015 1.01445 0.90095 0.90599 1.25599 1.02361 0.94977 1.01897 1.70102 1.44875 1.03828 1.40148 0.85134 0.78721 0.76430 0.79230 1.20808 1.19951 1.21978 1.21897 0.98997 0.90701 0.85247 1.23336 0.95278 0.91343 0.87290 0.88997 1.86336 1.41400 1.55955 1.53126 1.45293 1.04331 1.09586 1.51795 1.22497 1.03232 0.77172 1.05102 0.87733 0.88052 0.88272 0.79680 0.75323 0.93630 0.96952 0.94053 0.97152 0.93575 0.75096 0.89438 0.85739 0.89330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.82 9.99 71.23 0.71 -0.11 16 2 C 0.23 5.46 7.88 138.20 1.09 6.55 16 3 N -0.53 -15.68 11.20 -187.41 -2.10 -17.78 16 4 C 0.04 1.21 11.37 84.10 0.96 2.17 16 5 C -0.11 -3.47 6.91 40.01 0.28 -3.20 16 6 C 0.60 20.86 7.78 86.47 0.67 21.54 16 7 O -0.58 -22.03 14.48 -4.29 -0.06 -22.09 16 8 N -0.68 -23.68 4.77 -440.79 -2.10 -25.78 16 9 C 0.16 5.58 3.18 46.18 0.15 5.73 16 10 H 0.11 3.62 7.63 -2.39 -0.02 3.60 16 11 C 0.13 5.41 6.98 86.73 0.61 6.01 16 12 N -0.62 -30.99 3.39 -691.55 -2.35 -33.33 16 13 C -0.25 -13.89 10.23 84.03 0.86 -13.03 16 14 H 0.08 4.12 7.84 -2.91 -0.02 4.09 16 15 C -0.05 -3.00 5.40 84.86 0.46 -2.54 16 16 N -0.94 -54.37 10.69 21.65 0.23 -54.14 16 17 Si 0.98 44.91 29.56 68.60 2.03 46.94 16 18 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 19 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 20 H -0.29 -13.55 7.11 99.48 0.71 -12.84 16 21 C 0.16 7.16 5.13 86.93 0.45 7.61 16 22 C 0.09 3.03 4.23 32.07 0.14 3.16 16 23 H 0.09 2.87 8.14 -2.39 -0.02 2.85 16 24 O -0.56 -16.32 12.63 -148.98 -1.88 -18.21 16 25 N -0.43 -11.03 3.17 -524.94 -1.67 -12.70 16 26 C 0.06 1.12 10.35 127.77 1.32 2.44 16 27 H 0.10 0.87 8.14 -2.38 -0.02 0.85 16 28 H 0.10 0.72 7.77 -2.39 -0.02 0.70 16 29 H 0.10 1.14 8.14 -2.38 -0.02 1.12 16 30 H 0.19 5.14 7.46 -2.91 -0.02 5.11 16 31 H 0.41 13.88 7.14 -92.71 -0.66 13.22 16 32 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 33 H 0.01 0.58 8.04 -2.39 -0.02 0.56 16 34 H 0.25 14.06 8.31 -92.70 -0.77 13.29 16 35 H 0.01 0.53 8.06 -2.38 -0.02 0.51 16 36 H 0.05 2.33 6.97 -2.39 -0.02 2.31 16 37 H 0.40 8.40 9.12 -74.06 -0.68 7.73 16 38 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 39 H 0.12 1.23 7.82 -2.39 -0.02 1.21 16 40 H 0.09 2.06 6.22 -2.39 -0.01 2.05 16 Total: -1.00 -74.04 333.76 -0.47 -74.51 By element: Atomic # 1 Polarization: 26.51 SS G_CDS: -0.25 Total: 26.26 kcal Atomic # 6 Polarization: 28.64 SS G_CDS: 7.68 Total: 36.32 kcal Atomic # 7 Polarization: -135.76 SS G_CDS: -7.98 Total: -143.74 kcal Atomic # 8 Polarization: -38.35 SS G_CDS: -1.94 Total: -40.29 kcal Atomic # 14 Polarization: 44.91 SS G_CDS: 2.03 Total: 46.94 kcal Total: -74.04 -0.47 -74.51 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083728288.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.974 kcal (2) G-P(sol) polarization free energy of solvation -74.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.510 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds