Wall clock time and date at job start Tue Mar 31 2020 03:01:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.35838 * 126.46191 * 2 1 4 4 H 0.96996 * 124.91791 * 359.97438 * 3 2 1 5 5 N 1.28455 * 110.17046 * 179.70290 * 3 2 1 6 6 C 1.31939 * 110.20700 * 0.45357 * 5 3 2 7 7 C 1.47523 * 126.45804 * 179.81902 * 6 5 3 8 8 O 1.21591 * 119.99849 * 179.68746 * 7 6 5 9 9 N 1.34773 * 120.00451 * 359.68997 * 7 6 5 10 10 C 1.46498 * 120.00379 * 180.02562 * 9 7 6 11 11 C 1.53003 * 109.47303 * 180.02562 * 10 9 7 12 12 H 1.09000 * 112.84866 * 316.19334 * 11 10 9 13 13 C 1.53777 * 113.69423 * 87.46056 * 11 10 9 14 14 C 1.53774 * 87.08381 * 139.99263 * 13 11 10 15 15 H 1.08997 * 113.69521 * 220.00978 * 14 13 11 16 16 N 1.46505 * 113.61385 * 89.11575 * 14 13 11 17 17 C 1.36931 * 119.99788 * 107.50497 * 16 14 13 18 18 H 1.08002 * 120.00438 * 0.02562 * 17 16 14 19 19 C 1.38817 * 119.99680 * 179.72358 * 17 16 14 20 20 N 1.31617 * 119.99873 * 180.27450 * 19 17 16 21 21 Si 1.86800 * 120.00209 * 0.27770 * 19 17 16 22 22 H 1.48498 * 109.47118 * 89.99559 * 21 19 17 23 23 H 1.48499 * 109.47134 * 210.00079 * 21 19 17 24 24 H 1.48507 * 109.46904 * 329.99901 * 21 19 17 25 25 C 1.53783 * 113.61542 * 184.99988 * 11 10 9 26 26 C 1.35785 * 126.46135 * 179.97438 * 2 1 3 27 27 O 1.36084 * 127.26506 * 0.04079 * 26 2 1 28 28 H 1.08994 * 109.47112 * 270.03072 * 1 2 3 29 29 H 1.08999 * 109.46784 * 30.03117 * 1 2 3 30 30 H 1.08993 * 109.47121 * 150.02492 * 1 2 3 31 31 H 0.97007 * 119.99895 * 0.02562 * 9 7 6 32 32 H 1.08996 * 109.47520 * 59.99368 * 10 9 7 33 33 H 1.09007 * 109.46836 * 299.99592 * 10 9 7 34 34 H 1.09001 * 113.61290 * 25.44523 * 13 11 10 35 35 H 1.09000 * 113.61684 * 254.54545 * 13 11 10 36 36 H 0.97000 * 119.99792 * 287.50291 * 16 14 13 37 37 H 0.97000 * 120.00553 * 180.02562 * 20 19 17 38 38 H 1.08995 * 113.61832 * 105.38097 * 25 11 10 39 39 H 1.08996 * 113.68937 * 334.49004 * 25 11 10 40 40 H 0.96701 * 114.00141 * 270.00697 * 27 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3143 1.0925 0.0000 4 1 2.0046 2.0117 -0.0004 5 7 3.5472 0.7321 0.0063 6 6 3.6374 -0.5842 0.0009 7 6 4.8810 -1.3777 0.0015 8 8 4.8271 -2.5924 0.0018 9 7 6.0769 -0.7563 0.0017 10 6 7.3119 -1.5444 0.0018 11 6 8.5178 -0.6027 0.0027 12 1 8.4055 0.2295 -0.6922 13 6 8.9660 -0.1739 1.4098 14 6 10.4123 -0.3265 0.9102 15 1 11.0838 -0.7742 1.6428 16 7 10.9574 0.8935 0.3096 17 6 11.9045 1.6219 0.9787 18 1 12.2499 1.2968 1.9490 19 6 12.4252 2.7747 0.4070 20 7 13.3394 3.4719 1.0477 21 14 11.8284 3.3367 -1.2715 22 1 10.6640 4.2432 -1.1048 23 1 12.9222 4.0589 -1.9695 24 1 11.4244 2.1546 -2.0745 25 6 9.8673 -1.3298 -0.1200 26 6 2.3139 -1.0921 0.0005 27 8 1.9326 -2.3984 0.0003 28 1 -0.3633 0.0006 1.0276 29 1 -0.3633 0.8897 -0.5143 30 1 -0.3633 -0.8902 -0.5134 31 1 6.1200 0.2128 0.0019 32 1 7.3419 -2.1729 -0.8882 33 1 7.3417 -2.1730 0.8918 34 1 8.6961 -0.8859 2.1899 35 1 8.6964 0.8521 1.6602 36 1 10.6475 1.1853 -0.5620 37 1 13.7031 4.2777 0.6486 38 1 10.3255 -1.2370 -1.1046 39 1 9.8453 -2.3579 0.2413 40 1 1.8218 -2.7759 0.8836 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086341814.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:01:28 Heat of formation + Delta-G solvation = -3.063630 kcal Electronic energy + Delta-G solvation = -22816.134885 eV Core-core repulsion = 19246.568343 eV Total energy + Delta-G solvation = -3569.566542 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.148 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -43.75976 -40.78469 -39.81316 -38.20426 -36.07401 -35.00094 -33.67232 -32.65941 -32.04468 -29.07451 -27.75924 -26.45712 -25.78225 -24.69865 -23.00898 -22.37539 -21.30192 -20.08852 -19.55662 -19.30243 -18.23794 -17.99074 -17.09794 -16.99120 -16.62382 -16.29074 -15.95380 -15.49117 -15.23604 -15.00602 -14.80753 -14.63600 -14.61975 -14.09365 -13.74798 -13.35376 -13.32373 -13.10454 -13.01135 -12.72452 -12.67212 -12.25136 -11.90059 -11.69291 -11.62118 -11.46570 -11.15911 -10.93382 -10.83148 -10.52189 -10.05695 -9.75756 -9.29748 -8.02936 -5.36350 0.36875 0.83388 1.37402 1.40618 1.47937 1.74230 2.13200 2.22961 2.47747 3.10553 3.27489 3.51560 3.64570 3.68643 3.74309 3.80899 3.98490 4.01405 4.27401 4.36781 4.40923 4.70123 4.75223 4.75283 4.82298 4.93771 4.96449 4.98433 5.08819 5.19427 5.23533 5.31988 5.46398 5.54512 5.80752 5.97246 6.22613 6.39629 6.71589 6.79323 7.07610 7.10779 7.84770 8.03240 9.18600 Molecular weight = 294.15amu Principal moments of inertia in cm(-1) A = 0.022799 B = 0.002946 C = 0.002712 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1227.835123 B = 9503.626293 C =10322.380365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.011 3.989 3 N -0.354 5.354 4 H 0.468 0.532 5 N -0.253 5.253 6 C -0.060 4.060 7 C 0.596 3.404 8 O -0.563 6.563 9 N -0.707 5.707 10 C 0.138 3.862 11 C -0.107 4.107 12 H 0.087 0.913 13 C -0.155 4.155 14 C 0.146 3.854 15 H 0.060 0.940 16 N -0.734 5.734 17 C -0.231 4.231 18 H 0.057 0.943 19 C -0.065 4.065 20 N -0.984 5.984 21 Si 0.955 3.045 22 H -0.277 1.277 23 H -0.297 1.297 24 H -0.251 1.251 25 C -0.131 4.131 26 C 0.017 3.983 27 O -0.467 6.467 28 H 0.099 0.901 29 H 0.097 0.903 30 H 0.088 0.912 31 H 0.412 0.588 32 H 0.069 0.931 33 H 0.073 0.927 34 H 0.092 0.908 35 H 0.051 0.949 36 H 0.366 0.634 37 H 0.258 0.742 38 H 0.067 0.933 39 H 0.109 0.891 40 H 0.401 0.599 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.359 -7.572 -2.762 31.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.116 4.116 3 N -0.075 5.075 4 H 0.318 0.682 5 N -0.092 5.092 6 C -0.220 4.220 7 C 0.381 3.619 8 O -0.440 6.440 9 N -0.358 5.358 10 C 0.015 3.985 11 C -0.126 4.126 12 H 0.105 0.895 13 C -0.195 4.195 14 C 0.037 3.963 15 H 0.078 0.922 16 N -0.376 5.376 17 C -0.362 4.362 18 H 0.075 0.925 19 C -0.257 4.257 20 N -0.635 5.635 21 Si 0.782 3.218 22 H -0.203 1.203 23 H -0.223 1.223 24 H -0.176 1.176 25 C -0.170 4.170 26 C -0.039 4.039 27 O -0.274 6.274 28 H 0.117 0.883 29 H 0.116 0.884 30 H 0.107 0.893 31 H 0.248 0.752 32 H 0.088 0.912 33 H 0.091 0.909 34 H 0.111 0.889 35 H 0.070 0.930 36 H 0.200 0.800 37 H 0.067 0.933 38 H 0.085 0.915 39 H 0.127 0.873 40 H 0.258 0.742 Dipole moment (debyes) X Y Z Total from point charges -29.517 -7.451 -3.202 30.610 hybrid contribution -0.186 0.879 -0.221 0.925 sum -29.703 -6.572 -3.423 30.613 Atomic orbital electron populations 1.20498 0.82797 1.05452 1.05002 1.22060 0.96971 0.86159 1.06453 1.43224 1.01918 1.10425 1.51888 0.68244 1.73577 1.03395 1.13403 1.18810 1.22326 0.95485 0.90781 1.13407 1.17070 0.82405 0.86239 0.76166 1.90780 1.87299 1.14047 1.51890 1.45890 1.05043 1.11329 1.73492 1.21414 0.81261 0.93435 1.02367 1.22587 0.93245 0.98362 0.98388 0.89452 1.23718 0.98489 1.01048 0.96253 1.21342 0.93028 0.86593 0.95366 0.92224 1.42456 1.47520 1.27148 1.20476 1.19077 1.13033 1.03422 1.00710 0.92463 1.25513 0.99352 0.98176 1.02622 1.69882 1.33573 1.19173 1.40841 0.85411 0.77362 0.78657 0.80368 1.20347 1.22344 1.17597 1.23359 0.94269 0.99453 0.99967 1.18066 0.89032 0.85948 1.10871 1.84835 1.88620 1.19482 1.34472 0.88265 0.88388 0.89331 0.75206 0.91250 0.90914 0.88920 0.93030 0.80017 0.93337 0.91465 0.87252 0.74234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.34 10.44 71.24 0.74 0.41 16 2 C 0.01 0.14 7.27 41.37 0.30 0.44 16 3 N -0.35 -4.43 6.87 -47.26 -0.32 -4.76 16 4 H 0.47 1.94 8.96 -220.00 -1.97 -0.03 16 5 N -0.25 -5.21 11.91 -48.09 -0.57 -5.78 16 6 C -0.06 -1.49 7.13 42.45 0.30 -1.19 16 7 C 0.60 17.23 7.82 86.69 0.68 17.91 16 8 O -0.56 -19.45 16.53 -1.91 -0.03 -19.48 16 9 N -0.71 -18.00 5.55 -466.28 -2.59 -20.58 16 10 C 0.14 3.42 5.52 86.38 0.48 3.90 16 11 C -0.11 -2.85 3.63 -10.27 -0.04 -2.88 16 12 H 0.09 2.42 8.14 -2.39 -0.02 2.40 16 13 C -0.15 -4.75 7.43 31.12 0.23 -4.52 16 14 C 0.15 5.34 4.56 45.52 0.21 5.55 16 15 H 0.06 2.30 8.10 -2.39 -0.02 2.28 16 16 N -0.73 -33.75 5.11 -320.44 -1.64 -35.39 16 17 C -0.23 -13.17 10.45 84.04 0.88 -12.30 16 18 H 0.06 3.58 8.06 -2.91 -0.02 3.55 16 19 C -0.07 -3.85 5.50 84.86 0.47 -3.39 16 20 N -0.98 -63.29 13.97 21.65 0.30 -62.99 16 21 Si 0.95 45.32 27.74 68.60 1.90 47.22 16 22 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 23 H -0.30 -14.31 7.11 99.48 0.71 -13.60 16 24 H -0.25 -10.74 6.51 99.48 0.65 -10.09 16 25 C -0.13 -3.66 7.39 31.12 0.23 -3.43 16 26 C 0.02 0.35 7.28 22.57 0.16 0.51 16 27 O -0.47 -9.68 13.19 -92.40 -1.22 -10.90 16 28 H 0.10 0.12 8.14 -2.39 -0.02 0.10 16 29 H 0.10 -0.01 8.14 -2.39 -0.02 -0.03 16 30 H 0.09 0.48 8.14 -2.39 -0.02 0.46 16 31 H 0.41 9.73 8.19 -92.70 -0.76 8.97 16 32 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 33 H 0.07 1.80 7.85 -2.38 -0.02 1.78 16 34 H 0.09 2.49 7.90 -2.39 -0.02 2.47 16 35 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 36 H 0.37 16.10 5.76 -92.71 -0.53 15.56 16 37 H 0.26 15.78 8.31 -92.71 -0.77 15.01 16 38 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 39 H 0.11 2.50 8.10 -2.39 -0.02 2.48 16 40 H 0.40 4.99 9.07 -74.06 -0.67 4.32 16 Total: -1.00 -80.31 343.31 -2.41 -82.72 By element: Atomic # 1 Polarization: 31.80 SS G_CDS: -2.88 Total: 28.92 kcal Atomic # 6 Polarization: -3.62 SS G_CDS: 4.64 Total: 1.02 kcal Atomic # 7 Polarization: -124.68 SS G_CDS: -4.82 Total: -129.50 kcal Atomic # 8 Polarization: -29.13 SS G_CDS: -1.25 Total: -30.38 kcal Atomic # 14 Polarization: 45.32 SS G_CDS: 1.90 Total: 47.22 kcal Total: -80.31 -2.41 -82.72 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086341814.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.656 kcal (2) G-P(sol) polarization free energy of solvation -80.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.719 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds