Wall clock time and date at job start Tue Mar 31 2020 03:54:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.99339 * 2 1 4 4 C 1.54321 * 109.88204 * 238.90463 * 2 1 3 5 5 H 1.09002 * 110.72109 * 336.75211 * 4 2 1 6 6 N 1.46505 * 110.72218 * 99.85110 * 4 2 1 7 7 C 1.34771 * 119.99559 * 202.56055 * 6 4 2 8 8 O 1.21636 * 120.00501 * 359.97438 * 7 6 4 9 9 C 1.47256 * 119.99594 * 179.97438 * 7 6 4 10 10 C 1.36248 * 126.16555 * 179.70982 * 9 7 6 11 11 N 1.36338 * 106.88880 * 179.88065 * 10 9 7 12 12 C 1.46500 * 126.20103 * 180.14467 * 11 10 9 13 13 C 1.36171 * 107.60216 * 0.38579 * 11 10 9 14 14 O 1.35452 * 125.55512 * 179.74269 * 13 11 10 15 15 N 1.30703 * 108.89440 * 359.75433 * 13 11 10 16 16 C 1.55157 * 103.10033 * 218.29831 * 4 2 1 17 17 C 1.54914 * 101.58180 * 35.59285 * 16 4 2 18 18 N 1.47431 * 104.82819 * 322.98999 * 17 16 4 19 19 C 1.36938 * 125.64246 * 204.17306 * 18 17 16 20 20 H 1.08002 * 119.99579 * 179.97438 * 19 18 17 21 21 C 1.38810 * 120.00588 * 359.96966 * 19 18 17 22 22 N 1.31616 * 119.99510 * 0.02562 * 21 19 18 23 23 Si 1.86795 * 120.00207 * 180.02562 * 21 19 18 24 24 H 1.48496 * 109.47123 * 60.00134 * 23 21 19 25 25 H 1.48494 * 109.47297 * 180.02562 * 23 21 19 26 26 H 1.48506 * 109.47070 * 300.00102 * 23 21 19 27 27 H 1.09000 * 109.47185 * 181.09533 * 1 2 3 28 28 H 1.08996 * 109.47557 * 301.09576 * 1 2 3 29 29 H 1.09002 * 109.47281 * 61.09850 * 1 2 3 30 30 H 0.96995 * 119.99603 * 22.54801 * 6 4 2 31 31 H 1.08003 * 126.55219 * 359.97438 * 10 9 7 32 32 H 1.09001 * 109.46949 * 270.25972 * 12 11 10 33 33 H 1.08998 * 109.47206 * 30.25742 * 12 11 10 34 34 H 1.09000 * 109.47062 * 150.26232 * 12 11 10 35 35 H 0.96703 * 113.99805 * 269.99399 * 14 13 11 36 36 H 1.09004 * 111.00537 * 153.66574 * 16 4 2 37 37 H 1.09001 * 111.00741 * 277.51995 * 16 4 2 38 38 H 1.08999 * 110.36938 * 81.82606 * 17 16 4 39 39 H 1.09003 * 110.36526 * 204.15298 * 17 16 4 40 40 H 0.97002 * 120.00010 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9027 1.0243 0.0000 4 6 2.0548 -0.7495 -1.2427 5 1 1.3051 -1.4459 -1.6182 6 7 2.4516 0.1960 -2.2891 7 6 2.5006 -0.2040 -3.5752 8 8 2.2160 -1.3500 -3.8671 9 6 2.8989 0.7465 -4.6271 10 6 2.9961 0.4772 -5.9591 11 7 3.3908 1.6312 -6.5687 12 6 3.6227 1.8163 -8.0033 13 6 3.5355 2.5790 -5.6018 14 8 3.9214 3.8610 -5.8070 15 7 3.2416 2.0500 -4.4432 16 6 3.2897 -1.5140 -0.6968 17 6 2.8201 -1.8831 0.7326 18 7 2.0351 -0.7196 1.1840 19 6 1.8127 -0.3644 2.4877 20 1 1.2214 0.5102 2.7157 21 6 2.3469 -1.1284 3.5162 22 7 3.0677 -2.1940 3.2383 23 14 2.0427 -0.6442 5.2945 24 1 0.5828 -0.6481 5.5658 25 1 2.7164 -1.6148 6.1940 26 1 2.5877 0.7157 5.5373 27 1 -0.3633 -1.0275 0.0196 28 1 -0.3634 0.5307 0.8799 29 1 -0.3634 0.4967 -0.8997 30 1 2.6787 1.1097 -2.0563 31 1 2.7971 -0.4690 -6.4403 32 1 4.6626 1.5870 -8.2358 33 1 2.9691 1.1498 -8.5660 34 1 3.4090 2.8500 -8.2755 35 1 4.8779 3.9961 -5.7605 36 1 3.4871 -2.4092 -1.2865 37 1 4.1668 -0.8676 -0.6651 38 1 2.1952 -2.7758 0.7079 39 1 3.6788 -2.0380 1.3858 40 1 3.4413 -2.7277 3.9569 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001088837324.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:54:23 Heat of formation + Delta-G solvation = 21.744612 kcal Electronic energy + Delta-G solvation = -23535.928381 eV Core-core repulsion = 19967.437605 eV Total energy + Delta-G solvation = -3568.490776 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.148 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.40385 -39.33252 -37.70020 -37.23798 -34.52116 -33.81250 -31.88035 -30.27920 -29.42133 -28.61869 -27.50324 -24.92367 -23.90365 -22.92068 -21.69797 -20.39671 -19.95287 -19.59224 -18.70073 -17.54949 -16.72287 -16.47798 -15.87774 -15.73458 -14.84801 -14.66487 -14.56832 -14.41984 -13.86225 -13.75719 -13.35635 -13.19483 -12.92928 -12.65584 -12.25188 -12.04820 -11.86049 -11.47275 -11.06001 -10.78707 -10.76151 -10.55203 -10.42550 -10.34408 -10.09560 -10.06148 -9.76044 -9.64865 -9.47670 -8.80526 -8.59452 -8.42183 -6.80029 -5.58435 -3.00822 1.33777 1.90169 2.13771 3.24566 3.45051 3.48921 3.50333 3.60729 3.72370 4.25566 4.38496 4.54738 4.59614 4.89005 4.95244 5.21467 5.41261 5.50224 5.57425 5.64854 5.73029 5.91730 6.03705 6.21267 6.23544 6.36015 6.42582 6.46341 6.64198 6.72669 6.81453 6.96568 7.17519 7.21949 7.42205 7.60118 7.69240 7.92041 7.95263 8.41731 8.53836 9.27770 9.88315 10.53093 11.44869 Molecular weight = 294.15amu Principal moments of inertia in cm(-1) A = 0.031277 B = 0.003150 C = 0.003041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 895.013020 B = 8887.715379 C = 9204.761342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.154 3.846 3 H 0.038 0.962 4 C 0.135 3.865 5 H 0.093 0.907 6 N -0.698 5.698 7 C 0.601 3.399 8 O -0.546 6.546 9 C -0.039 4.039 10 C 0.040 3.960 11 N -0.466 5.466 12 C 0.069 3.931 13 C 0.375 3.625 14 O -0.440 6.440 15 N -0.452 5.452 16 C -0.153 4.153 17 C 0.154 3.846 18 N -0.596 5.596 19 C -0.218 4.218 20 H 0.077 0.923 21 C -0.012 4.012 22 N -0.922 5.922 23 Si 0.914 3.086 24 H -0.286 1.286 25 H -0.291 1.291 26 H -0.286 1.286 27 H 0.052 0.948 28 H 0.053 0.947 29 H 0.039 0.961 30 H 0.406 0.594 31 H 0.196 0.804 32 H 0.080 0.920 33 H 0.091 0.909 34 H 0.092 0.908 35 H 0.402 0.598 36 H 0.062 0.938 37 H 0.062 0.938 38 H 0.014 0.986 39 H 0.109 0.891 40 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.215 8.520 -23.171 24.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.046 3.954 3 H 0.056 0.944 4 C 0.030 3.970 5 H 0.111 0.889 6 N -0.347 5.347 7 C 0.386 3.614 8 O -0.424 6.424 9 C -0.169 4.169 10 C -0.097 4.097 11 N -0.161 5.161 12 C -0.074 4.074 13 C 0.074 3.926 14 O -0.240 6.240 15 N -0.182 5.182 16 C -0.192 4.192 17 C 0.029 3.971 18 N -0.321 5.321 19 C -0.346 4.346 20 H 0.095 0.905 21 C -0.207 4.207 22 N -0.571 5.571 23 Si 0.745 3.255 24 H -0.213 1.213 25 H -0.217 1.217 26 H -0.212 1.212 27 H 0.071 0.929 28 H 0.072 0.928 29 H 0.058 0.942 30 H 0.242 0.758 31 H 0.213 0.787 32 H 0.099 0.901 33 H 0.110 0.890 34 H 0.111 0.889 35 H 0.259 0.741 36 H 0.081 0.919 37 H 0.080 0.920 38 H 0.032 0.968 39 H 0.126 0.874 40 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 2.542 8.282 -22.559 24.165 hybrid contribution 0.442 0.416 0.130 0.620 sum 2.983 8.698 -22.429 24.240 Atomic orbital electron populations 1.22215 0.97802 1.01394 0.99954 1.21085 0.92595 0.94904 0.86834 0.94401 1.22185 0.97705 0.90780 0.86312 0.88872 1.45879 1.67441 1.15479 1.05920 1.16769 0.77274 0.85670 0.81693 1.90797 1.50663 1.18504 1.82472 1.20568 1.11549 0.91439 0.93308 1.22659 1.03453 0.90513 0.93107 1.45821 1.51553 1.09637 1.09069 1.22133 1.03338 1.04812 0.77086 1.20281 1.05478 0.83775 0.83068 1.84891 1.29930 1.17075 1.92132 1.70897 1.17876 1.07415 1.22016 1.23405 0.96786 0.99321 0.99728 1.21945 0.97330 0.88345 0.89507 1.44593 1.59200 1.28297 1.00033 1.18995 1.26922 1.08134 0.80570 0.90528 1.24774 1.00485 0.97460 0.97972 1.69789 1.39114 1.17945 1.30241 0.86159 0.77591 0.77372 0.84407 1.21280 1.21652 1.21228 0.92918 0.92755 0.94236 0.75835 0.78718 0.90117 0.88992 0.88939 0.74127 0.91943 0.91964 0.96782 0.87366 0.93721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.02 9.15 37.16 0.34 -2.68 16 2 C 0.15 3.27 3.50 -66.70 -0.23 3.03 16 3 H 0.04 0.80 7.70 -51.93 -0.40 0.40 16 4 C 0.13 2.63 2.79 -66.09 -0.18 2.44 16 5 H 0.09 1.90 7.33 -51.93 -0.38 1.52 16 6 N -0.70 -11.96 5.19 -53.15 -0.28 -12.24 16 7 C 0.60 10.17 7.81 -12.60 -0.10 10.07 16 8 O -0.55 -10.51 16.56 5.25 0.09 -10.42 16 9 C -0.04 -0.56 6.97 -83.06 -0.58 -1.14 16 10 C 0.04 0.42 11.29 -16.26 -0.18 0.24 16 11 N -0.47 -3.97 3.16 -125.77 -0.40 -4.37 16 12 C 0.07 0.25 11.11 59.85 0.66 0.91 16 13 C 0.38 4.03 9.03 -89.17 -0.81 3.23 16 14 O -0.44 -3.51 13.55 -18.05 -0.24 -3.75 16 15 N -0.45 -6.28 11.03 -11.22 -0.12 -6.41 16 16 C -0.15 -3.18 6.77 -24.58 -0.17 -3.35 16 17 C 0.15 3.85 5.89 -2.52 -0.01 3.84 16 18 N -0.60 -15.33 3.14 -162.22 -0.51 -15.84 16 19 C -0.22 -6.07 9.92 -15.06 -0.15 -6.22 16 20 H 0.08 2.06 7.83 -52.49 -0.41 1.65 16 21 C -0.01 -0.33 5.49 -17.43 -0.10 -0.42 16 22 N -0.92 -27.14 10.09 55.49 0.56 -26.58 16 23 Si 0.91 22.30 29.55 -169.99 -5.02 17.27 16 24 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 25 H -0.29 -7.15 7.11 56.52 0.40 -6.74 16 26 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 27 H 0.05 1.07 8.14 -51.93 -0.42 0.64 16 28 H 0.05 1.08 8.06 -51.93 -0.42 0.67 16 29 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.41 6.58 8.05 -40.82 -0.33 6.25 16 31 H 0.20 1.62 8.06 -52.48 -0.42 1.19 16 32 H 0.08 0.16 8.14 -51.93 -0.42 -0.26 16 33 H 0.09 0.20 8.14 -51.93 -0.42 -0.22 16 34 H 0.09 0.26 8.14 -51.93 -0.42 -0.16 16 35 H 0.40 1.14 9.06 45.56 0.41 1.55 16 36 H 0.06 1.25 8.14 -51.93 -0.42 0.82 16 37 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 38 H 0.01 0.38 8.14 -51.93 -0.42 -0.05 16 39 H 0.11 3.02 5.87 -51.93 -0.30 2.71 16 40 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 LS Contribution 338.70 15.07 5.10 5.10 Total: -1.00 -35.17 338.70 -7.10 -42.27 By element: Atomic # 1 Polarization: 9.78 SS G_CDS: -4.77 Total: 5.01 kcal Atomic # 6 Polarization: 11.46 SS G_CDS: -1.51 Total: 9.95 kcal Atomic # 7 Polarization: -64.69 SS G_CDS: -0.75 Total: -65.43 kcal Atomic # 8 Polarization: -14.02 SS G_CDS: -0.16 Total: -14.18 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -5.02 Total: 17.27 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -35.17 -7.10 -42.27 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088837324.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.016 kcal (2) G-P(sol) polarization free energy of solvation -35.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.271 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds