Wall clock time and date at job start Tue Mar 31 2020 03:54:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.99339 * 2 1 4 4 C 1.54321 * 109.88204 * 238.90463 * 2 1 3 5 5 H 1.09002 * 110.72109 * 336.75211 * 4 2 1 6 6 N 1.46505 * 110.72218 * 99.85110 * 4 2 1 7 7 C 1.34771 * 119.99559 * 202.56055 * 6 4 2 8 8 O 1.21636 * 120.00501 * 359.97438 * 7 6 4 9 9 C 1.47256 * 119.99594 * 179.97438 * 7 6 4 10 10 C 1.36248 * 126.16555 * 179.70982 * 9 7 6 11 11 N 1.36338 * 106.88880 * 179.88065 * 10 9 7 12 12 C 1.46500 * 126.20103 * 180.14467 * 11 10 9 13 13 C 1.36171 * 107.60216 * 0.38579 * 11 10 9 14 14 O 1.35452 * 125.55512 * 179.74269 * 13 11 10 15 15 N 1.30703 * 108.89440 * 359.75433 * 13 11 10 16 16 C 1.55157 * 103.10033 * 218.29831 * 4 2 1 17 17 C 1.54914 * 101.58180 * 35.59285 * 16 4 2 18 18 N 1.47431 * 104.82819 * 322.98999 * 17 16 4 19 19 C 1.36938 * 125.64246 * 204.17306 * 18 17 16 20 20 H 1.08002 * 119.99579 * 179.97438 * 19 18 17 21 21 C 1.38810 * 120.00588 * 359.96966 * 19 18 17 22 22 N 1.31616 * 119.99510 * 0.02562 * 21 19 18 23 23 Si 1.86795 * 120.00207 * 180.02562 * 21 19 18 24 24 H 1.48496 * 109.47123 * 60.00134 * 23 21 19 25 25 H 1.48494 * 109.47297 * 180.02562 * 23 21 19 26 26 H 1.48506 * 109.47070 * 300.00102 * 23 21 19 27 27 H 1.09000 * 109.47185 * 181.09533 * 1 2 3 28 28 H 1.08996 * 109.47557 * 301.09576 * 1 2 3 29 29 H 1.09002 * 109.47281 * 61.09850 * 1 2 3 30 30 H 0.96995 * 119.99603 * 22.54801 * 6 4 2 31 31 H 1.08003 * 126.55219 * 359.97438 * 10 9 7 32 32 H 1.09001 * 109.46949 * 270.25972 * 12 11 10 33 33 H 1.08998 * 109.47206 * 30.25742 * 12 11 10 34 34 H 1.09000 * 109.47062 * 150.26232 * 12 11 10 35 35 H 0.96703 * 113.99805 * 269.99399 * 14 13 11 36 36 H 1.09004 * 111.00537 * 153.66574 * 16 4 2 37 37 H 1.09001 * 111.00741 * 277.51995 * 16 4 2 38 38 H 1.08999 * 110.36938 * 81.82606 * 17 16 4 39 39 H 1.09003 * 110.36526 * 204.15298 * 17 16 4 40 40 H 0.97002 * 120.00010 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9027 1.0243 0.0000 4 6 2.0548 -0.7495 -1.2427 5 1 1.3051 -1.4459 -1.6182 6 7 2.4516 0.1960 -2.2891 7 6 2.5006 -0.2040 -3.5752 8 8 2.2160 -1.3500 -3.8671 9 6 2.8989 0.7465 -4.6271 10 6 2.9961 0.4772 -5.9591 11 7 3.3908 1.6312 -6.5687 12 6 3.6227 1.8163 -8.0033 13 6 3.5355 2.5790 -5.6018 14 8 3.9214 3.8610 -5.8070 15 7 3.2416 2.0500 -4.4432 16 6 3.2897 -1.5140 -0.6968 17 6 2.8201 -1.8831 0.7326 18 7 2.0351 -0.7196 1.1840 19 6 1.8127 -0.3644 2.4877 20 1 1.2214 0.5102 2.7157 21 6 2.3469 -1.1284 3.5162 22 7 3.0677 -2.1940 3.2383 23 14 2.0427 -0.6442 5.2945 24 1 0.5828 -0.6481 5.5658 25 1 2.7164 -1.6148 6.1940 26 1 2.5877 0.7157 5.5373 27 1 -0.3633 -1.0275 0.0196 28 1 -0.3634 0.5307 0.8799 29 1 -0.3634 0.4967 -0.8997 30 1 2.6787 1.1097 -2.0563 31 1 2.7971 -0.4690 -6.4403 32 1 4.6626 1.5870 -8.2358 33 1 2.9691 1.1498 -8.5660 34 1 3.4090 2.8500 -8.2755 35 1 4.8779 3.9961 -5.7605 36 1 3.4871 -2.4092 -1.2865 37 1 4.1668 -0.8676 -0.6651 38 1 2.1952 -2.7758 0.7079 39 1 3.6788 -2.0380 1.3858 40 1 3.4413 -2.7277 3.9569 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001088837324.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:54:23 Heat of formation + Delta-G solvation = -6.930764 kcal Electronic energy + Delta-G solvation = -23537.171839 eV Core-core repulsion = 19967.437605 eV Total energy + Delta-G solvation = -3569.734234 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.148 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -43.20219 -40.75651 -39.06836 -38.19873 -35.60460 -35.13228 -33.72318 -32.04365 -30.68454 -30.04762 -28.21135 -26.50026 -25.81426 -24.08372 -22.43840 -22.06113 -21.47940 -21.04804 -19.47591 -18.71883 -18.50066 -17.49193 -17.21033 -16.63984 -16.56449 -15.83221 -15.71030 -15.45294 -15.35806 -15.24512 -14.75775 -14.32995 -13.98166 -13.76775 -13.53738 -13.44505 -13.22906 -12.91982 -12.90902 -12.69872 -12.58915 -12.22347 -12.09540 -12.00025 -11.56409 -11.45792 -11.43239 -11.03330 -10.81996 -10.70331 -10.04038 -9.54864 -8.88262 -7.72275 -5.17378 0.48194 1.07469 1.42111 1.49310 1.52621 1.58676 2.12522 2.43954 2.54266 2.82293 3.37623 3.57123 3.65959 3.84170 3.86844 3.98626 4.11576 4.23185 4.39249 4.43526 4.51751 4.63283 4.69887 4.72752 4.82144 4.88116 4.95845 5.07303 5.14181 5.24797 5.36625 5.51507 5.61764 5.62428 5.66490 5.81948 6.32491 6.43568 6.63647 6.75196 7.13502 7.23316 7.80316 8.44762 9.29524 Molecular weight = 294.15amu Principal moments of inertia in cm(-1) A = 0.031277 B = 0.003150 C = 0.003041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 895.013020 B = 8887.715379 C = 9204.761342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.150 3.850 3 H 0.045 0.955 4 C 0.152 3.848 5 H 0.086 0.914 6 N -0.695 5.695 7 C 0.603 3.397 8 O -0.575 6.575 9 C -0.080 4.080 10 C 0.063 3.937 11 N -0.455 5.455 12 C 0.060 3.940 13 C 0.380 3.620 14 O -0.441 6.441 15 N -0.490 5.490 16 C -0.138 4.138 17 C 0.159 3.841 18 N -0.614 5.614 19 C -0.229 4.229 20 H 0.083 0.917 21 C -0.069 4.069 22 N -0.951 5.951 23 Si 0.980 3.020 24 H -0.279 1.279 25 H -0.295 1.295 26 H -0.277 1.277 27 H 0.040 0.960 28 H 0.048 0.952 29 H 0.067 0.933 30 H 0.411 0.589 31 H 0.219 0.781 32 H 0.102 0.898 33 H 0.110 0.890 34 H 0.103 0.897 35 H 0.425 0.575 36 H 0.070 0.930 37 H 0.065 0.935 38 H -0.011 1.011 39 H 0.078 0.922 40 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.219 10.244 -25.501 27.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.043 3.957 3 H 0.063 0.937 4 C 0.046 3.954 5 H 0.104 0.896 6 N -0.345 5.345 7 C 0.390 3.610 8 O -0.456 6.456 9 C -0.208 4.208 10 C -0.077 4.077 11 N -0.148 5.148 12 C -0.080 4.080 13 C 0.077 3.923 14 O -0.245 6.245 15 N -0.221 5.221 16 C -0.177 4.177 17 C 0.034 3.966 18 N -0.340 5.340 19 C -0.358 4.358 20 H 0.101 0.899 21 C -0.261 4.261 22 N -0.601 5.601 23 Si 0.809 3.191 24 H -0.206 1.206 25 H -0.222 1.222 26 H -0.203 1.203 27 H 0.059 0.941 28 H 0.067 0.933 29 H 0.086 0.914 30 H 0.248 0.752 31 H 0.235 0.765 32 H 0.120 0.880 33 H 0.129 0.871 34 H 0.122 0.878 35 H 0.286 0.714 36 H 0.089 0.911 37 H 0.083 0.917 38 H 0.007 0.993 39 H 0.096 0.904 40 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 2.561 10.070 -24.946 27.023 hybrid contribution 0.480 -0.028 0.695 0.845 sum 3.041 10.042 -24.251 26.424 Atomic orbital electron populations 1.22088 0.96270 1.00940 1.01078 1.21258 0.93692 0.94810 0.85961 0.93721 1.21791 0.96511 0.90723 0.86336 0.89618 1.45724 1.67827 1.15174 1.05738 1.17135 0.76213 0.85819 0.81820 1.90769 1.52030 1.19874 1.82887 1.20192 1.15137 0.91645 0.93785 1.22980 1.00942 0.91704 0.92059 1.46045 1.49831 1.08273 1.10684 1.22543 1.05220 1.06143 0.74065 1.20319 1.04485 0.84510 0.82972 1.84858 1.32177 1.15578 1.91892 1.70753 1.19506 1.07601 1.24264 1.23208 0.97418 0.99953 0.97169 1.21670 0.95733 0.87789 0.91412 1.44832 1.59703 1.28684 1.00758 1.19367 1.26450 1.08177 0.81776 0.89888 1.25616 1.00788 0.97727 1.01968 1.70037 1.40204 1.18974 1.30882 0.85122 0.77528 0.77073 0.79421 1.20560 1.22171 1.20260 0.94069 0.93313 0.91409 0.75214 0.76467 0.87990 0.87117 0.87841 0.71438 0.91090 0.91673 0.99294 0.90402 0.94399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.57 9.15 71.98 0.66 -4.91 16 2 C 0.15 6.34 3.50 45.25 0.16 6.50 16 3 H 0.05 1.86 7.70 -2.39 -0.02 1.84 16 4 C 0.15 5.93 2.79 46.18 0.13 6.06 16 5 H 0.09 3.51 7.33 -2.39 -0.02 3.50 16 6 N -0.70 -23.54 5.19 -440.32 -2.28 -25.82 16 7 C 0.60 20.08 7.81 86.61 0.68 20.76 16 8 O -0.58 -21.90 16.56 -4.14 -0.07 -21.97 16 9 C -0.08 -2.16 6.97 40.40 0.28 -1.88 16 10 C 0.06 1.19 11.29 83.53 0.94 2.13 16 11 N -0.45 -6.34 3.16 -662.75 -2.09 -8.43 16 12 C 0.06 0.19 11.11 127.77 1.42 1.61 16 13 C 0.38 7.27 9.03 179.84 1.62 8.90 16 14 O -0.44 -5.85 13.55 -87.49 -1.19 -7.03 16 15 N -0.49 -13.01 11.03 -303.16 -3.34 -16.36 16 16 C -0.14 -5.83 6.77 31.99 0.22 -5.62 16 17 C 0.16 8.29 5.89 86.86 0.51 8.80 16 18 N -0.61 -32.20 3.14 -667.15 -2.10 -34.29 16 19 C -0.23 -12.89 9.92 84.03 0.83 -12.06 16 20 H 0.08 4.45 7.83 -2.91 -0.02 4.43 16 21 C -0.07 -3.95 5.49 84.86 0.47 -3.49 16 22 N -0.95 -57.71 10.09 21.65 0.22 -57.50 16 23 Si 0.98 46.35 29.55 68.60 2.03 48.37 16 24 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 25 H -0.30 -14.08 7.11 99.48 0.71 -13.38 16 26 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 27 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 28 H 0.05 1.91 8.06 -2.39 -0.02 1.89 16 29 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 30 H 0.41 13.15 8.05 -92.71 -0.75 12.40 16 31 H 0.22 2.95 8.06 -2.91 -0.02 2.93 16 32 H 0.10 -0.04 8.14 -2.39 -0.02 -0.05 16 33 H 0.11 0.00 8.14 -2.39 -0.02 -0.02 16 34 H 0.10 0.17 8.14 -2.39 -0.02 0.15 16 35 H 0.42 1.18 9.06 -74.06 -0.67 0.50 16 36 H 0.07 2.86 8.14 -2.39 -0.02 2.85 16 37 H 0.06 2.70 8.14 -2.39 -0.02 2.68 16 38 H -0.01 -0.61 8.14 -2.39 -0.02 -0.63 16 39 H 0.08 4.55 5.87 -2.39 -0.01 4.53 16 40 H 0.25 14.57 8.31 -92.71 -0.77 13.80 16 Total: -1.00 -77.70 338.70 -1.25 -78.95 By element: Atomic # 1 Polarization: 17.63 SS G_CDS: -0.34 Total: 17.29 kcal Atomic # 6 Polarization: 18.88 SS G_CDS: 7.92 Total: 26.80 kcal Atomic # 7 Polarization: -132.80 SS G_CDS: -9.60 Total: -142.40 kcal Atomic # 8 Polarization: -27.75 SS G_CDS: -1.25 Total: -29.01 kcal Atomic # 14 Polarization: 46.35 SS G_CDS: 2.03 Total: 48.37 kcal Total: -77.70 -1.25 -78.95 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088837324.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.021 kcal (2) G-P(sol) polarization free energy of solvation -77.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.952 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds