Wall clock time and date at job start Tue Mar 31 2020 04:44:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34264 * 125.75411 * 2 1 4 4 C 1.38044 * 107.41676 * 179.97438 * 3 2 1 5 5 C 1.47427 * 126.41301 * 179.97438 * 4 3 2 6 6 O 1.21602 * 119.99978 * 359.97438 * 5 4 3 7 7 N 1.34775 * 120.00217 * 180.02562 * 5 4 3 8 8 C 1.46498 * 120.00364 * 180.02562 * 7 5 4 9 9 H 1.08997 * 109.46019 * 35.01619 * 8 7 5 10 10 C 1.53044 * 109.45479 * 275.06527 * 8 7 5 11 11 C 1.53198 * 109.30986 * 301.33923 * 10 8 7 12 12 N 1.46928 * 108.77662 * 305.36644 * 11 10 8 13 13 C 1.36936 * 120.62954 * 233.63016 * 12 11 10 14 14 H 1.08001 * 119.99951 * 27.66857 * 13 12 11 15 15 C 1.38812 * 119.99549 * 207.66988 * 13 12 11 16 16 N 1.31620 * 120.00514 * 17.36459 * 15 13 12 17 17 Si 1.86805 * 119.99690 * 197.36146 * 15 13 12 18 18 H 1.48499 * 109.47138 * 89.99962 * 17 15 13 19 19 H 1.48496 * 109.46975 * 210.00006 * 17 15 13 20 20 H 1.48503 * 109.47099 * 330.00105 * 17 15 13 21 21 C 1.46919 * 118.73612 * 53.61219 * 12 11 10 22 22 C 1.53038 * 109.46173 * 154.99625 * 8 7 5 23 23 H 1.09000 * 109.49196 * 178.63521 * 22 8 7 24 24 O 1.42897 * 109.49631 * 298.69674 * 22 8 7 25 25 C 1.41285 * 107.17161 * 0.22669 * 4 3 2 26 26 N 1.30446 * 108.02385 * 359.61623 * 25 4 3 27 27 H 1.09004 * 109.46847 * 90.00177 * 1 2 3 28 28 H 1.09002 * 109.47044 * 209.99974 * 1 2 3 29 29 H 1.08997 * 109.47029 * 330.00680 * 1 2 3 30 30 H 1.08001 * 126.29078 * 359.95663 * 3 2 1 31 31 H 0.97004 * 119.99513 * 0.26638 * 7 5 4 32 32 H 1.08998 * 109.50094 * 61.29413 * 10 8 7 33 33 H 1.09004 * 109.49383 * 181.39572 * 10 8 7 34 34 H 1.09008 * 109.58231 * 185.58238 * 11 10 8 35 35 H 1.08997 * 109.58505 * 65.15983 * 11 10 8 36 36 H 0.96996 * 119.99819 * 180.02562 * 16 15 13 37 37 H 1.09002 * 109.58582 * 186.59715 * 21 12 11 38 38 H 1.09003 * 109.70412 * 66.24806 * 21 12 11 39 39 H 0.96701 * 113.99782 * 179.97438 * 24 22 8 40 40 H 1.08006 * 125.98814 * 179.73647 * 25 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2495 1.0896 0.0000 4 6 3.5599 0.6553 0.0006 5 6 4.7638 1.5061 0.0003 6 8 4.6525 2.7171 -0.0011 7 7 5.9878 0.9419 0.0004 8 6 7.1842 1.7874 0.0007 9 1 6.9949 2.6843 0.5904 10 6 7.5271 2.1858 -1.4367 11 6 7.7588 0.9220 -2.2710 12 7 8.7834 0.1011 -1.6115 13 6 9.8919 -0.3162 -2.2987 14 1 10.2653 0.2678 -3.1270 15 6 10.5356 -1.4897 -1.9308 16 7 9.9168 -2.3700 -1.1728 17 14 12.2801 -1.8197 -2.5115 18 1 13.2430 -1.2738 -1.5215 19 1 12.4876 -3.2836 -2.6487 20 1 12.4966 -1.1637 -3.8261 21 6 8.5962 -0.2633 -0.2006 22 6 8.3552 1.0137 0.6107 23 1 9.2514 1.6336 0.5890 24 8 8.0464 0.6689 1.9626 25 6 3.5311 -0.7573 -0.0044 26 7 2.2827 -1.1356 0.0006 27 1 -0.3633 0.0000 -1.0277 28 1 -0.3633 -0.8900 0.5138 29 1 -0.3633 0.8900 0.5137 30 1 1.9166 2.1170 -0.0007 31 1 6.0765 -0.0240 -0.0032 32 1 6.7022 2.7569 -1.8627 33 1 8.4314 2.7944 -1.4395 34 1 8.0996 1.2001 -3.2684 35 1 6.8295 0.3572 -2.3445 36 1 10.3668 -3.1898 -0.9154 37 1 9.4895 -0.7674 0.1683 38 1 7.7362 -0.9259 -0.1031 39 1 8.7459 0.1753 2.4122 40 1 4.3919 -1.4096 -0.0093 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001090062173.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:44:13 Heat of formation + Delta-G solvation = 18.826987 kcal Electronic energy + Delta-G solvation = -24260.741863 eV Core-core repulsion = 20692.124569 eV Total energy + Delta-G solvation = -3568.617294 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.148 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.33069 -39.43483 -37.57363 -35.24436 -34.02171 -33.50530 -31.87157 -30.41365 -29.51106 -28.83174 -27.10899 -25.28448 -23.05512 -22.18648 -21.73006 -21.02803 -20.07381 -18.59589 -17.97652 -16.91915 -16.52038 -15.86233 -15.73255 -15.22006 -14.92016 -14.56766 -14.48455 -14.02564 -13.71783 -13.61682 -13.34225 -13.02961 -12.87010 -12.73506 -12.54649 -12.20048 -11.79603 -11.62985 -11.12333 -11.00924 -10.95065 -10.83163 -10.40076 -10.17811 -9.97572 -9.64099 -9.63517 -9.46909 -9.28535 -8.77984 -8.58700 -8.39342 -6.76719 -5.87701 -3.30661 1.55952 2.25414 2.27305 3.33259 3.41185 3.42002 3.69049 3.77588 4.35400 4.42142 4.65441 4.70403 4.84752 4.94220 5.10736 5.25085 5.28020 5.43614 5.44501 5.50964 5.76175 5.80287 5.88997 5.97763 6.08341 6.30491 6.39423 6.51548 6.51988 6.72701 6.75526 6.86360 7.04858 7.09507 7.43427 7.49353 7.72385 8.04242 8.13701 8.36127 8.69972 9.11186 9.74075 10.29904 11.20344 Molecular weight = 294.15amu Principal moments of inertia in cm(-1) A = 0.022118 B = 0.004062 C = 0.003825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1265.639885 B = 6892.068460 C = 7319.100508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.099 3.901 2 N -0.370 5.370 3 C 0.121 3.879 4 C -0.285 4.285 5 C 0.594 3.406 6 O -0.564 6.564 7 N -0.700 5.700 8 C 0.167 3.833 9 H 0.079 0.921 10 C -0.144 4.144 11 C 0.145 3.855 12 N -0.588 5.588 13 C -0.254 4.254 14 H 0.068 0.932 15 C 0.003 3.997 16 N -0.902 5.902 17 Si 0.903 3.097 18 H -0.287 1.287 19 H -0.291 1.291 20 H -0.279 1.279 21 C 0.146 3.854 22 C 0.067 3.933 23 H 0.061 0.939 24 O -0.572 6.572 25 C 0.087 3.913 26 N -0.300 5.300 27 H 0.078 0.922 28 H 0.091 0.909 29 H 0.089 0.911 30 H 0.187 0.813 31 H 0.403 0.597 32 H 0.065 0.935 33 H 0.069 0.931 34 H 0.056 0.944 35 H 0.021 0.979 36 H 0.255 0.745 37 H 0.092 0.908 38 H 0.025 0.975 39 H 0.375 0.625 40 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.104 5.047 4.011 15.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.042 4.042 2 N -0.149 5.149 3 C -0.030 4.030 4 C -0.300 4.300 5 C 0.381 3.619 6 O -0.445 6.445 7 N -0.350 5.350 8 C 0.063 3.937 9 H 0.097 0.903 10 C -0.185 4.185 11 C 0.019 3.981 12 N -0.312 5.312 13 C -0.384 4.384 14 H 0.086 0.914 15 C -0.195 4.195 16 N -0.547 5.547 17 Si 0.733 3.267 18 H -0.214 1.214 19 H -0.217 1.217 20 H -0.204 1.204 21 C 0.019 3.981 22 C 0.006 3.994 23 H 0.079 0.921 24 O -0.377 6.377 25 C -0.101 4.101 26 N -0.120 5.120 27 H 0.096 0.904 28 H 0.110 0.890 29 H 0.108 0.892 30 H 0.204 0.796 31 H 0.239 0.761 32 H 0.083 0.917 33 H 0.088 0.912 34 H 0.074 0.926 35 H 0.039 0.961 36 H 0.065 0.935 37 H 0.110 0.890 38 H 0.042 0.958 39 H 0.222 0.778 40 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges -15.624 5.034 3.912 16.875 hybrid contribution 2.015 -0.382 -0.175 2.058 sum -13.609 4.652 3.736 14.860 Atomic orbital electron populations 1.21939 0.73780 1.04769 1.03733 1.48407 1.07090 1.03994 1.55415 1.22916 0.90163 0.93565 0.96350 1.20368 0.93647 0.93606 1.22338 1.17171 0.82346 0.86778 0.75613 1.90715 1.87064 1.14192 1.52509 1.45744 1.04721 1.10757 1.73777 1.20782 0.83308 0.93348 0.96301 0.90331 1.22405 1.01121 0.99845 0.95103 1.20929 0.92043 0.90268 0.94870 1.43964 1.21242 1.59836 1.06152 1.19225 1.02256 1.02834 1.14062 0.91396 1.25039 0.99307 0.94901 1.00293 1.70014 1.35653 1.08657 1.40329 0.86274 0.84790 0.77058 0.78561 1.21429 1.21749 1.20391 1.21392 1.01515 0.91246 0.83943 1.22936 0.95644 0.99082 0.81760 0.92096 1.86425 1.47257 1.78058 1.25915 1.24178 0.95288 0.94171 0.96459 1.77190 1.02007 1.07588 1.25259 0.90374 0.88988 0.89203 0.79642 0.76099 0.91669 0.91222 0.92551 0.96070 0.93541 0.88969 0.95758 0.77824 0.79145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.61 11.44 59.85 0.68 1.29 16 2 N -0.37 -4.19 3.98 -67.60 -0.27 -4.46 16 3 C 0.12 1.48 11.30 -16.56 -0.19 1.29 16 4 C -0.28 -4.23 6.13 -105.07 -0.64 -4.87 16 5 C 0.59 10.31 7.78 -12.52 -0.10 10.21 16 6 O -0.56 -11.14 16.56 5.28 0.09 -11.05 16 7 N -0.70 -12.12 4.14 -54.84 -0.23 -12.35 16 8 C 0.17 3.04 2.47 -67.89 -0.17 2.87 16 9 H 0.08 1.49 7.58 -51.93 -0.39 1.10 16 10 C -0.14 -2.61 5.77 -26.61 -0.15 -2.77 16 11 C 0.15 2.97 6.26 -3.71 -0.02 2.95 16 12 N -0.59 -13.84 2.99 -172.32 -0.52 -14.35 16 13 C -0.25 -6.66 9.58 -15.06 -0.14 -6.80 16 14 H 0.07 1.76 7.89 -52.49 -0.41 1.35 16 15 C 0.00 0.09 4.91 -17.43 -0.09 0.00 16 16 N -0.90 -24.75 11.19 55.49 0.62 -24.13 16 17 Si 0.90 20.91 29.59 -169.99 -5.03 15.89 16 18 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 19 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 20 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 21 C 0.15 3.18 4.64 -3.71 -0.02 3.16 16 22 C 0.07 1.23 3.36 -26.61 -0.09 1.14 16 23 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 24 O -0.57 -9.79 13.21 -35.23 -0.47 -10.26 16 25 C 0.09 1.23 11.50 -16.98 -0.20 1.03 16 26 N -0.30 -4.21 12.50 30.86 0.39 -3.83 16 27 H 0.08 0.39 8.14 -51.93 -0.42 -0.04 16 28 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.09 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.19 1.77 8.06 -52.49 -0.42 1.35 16 31 H 0.40 6.89 5.82 -40.82 -0.24 6.65 16 32 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 33 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 34 H 0.06 1.14 7.93 -51.92 -0.41 0.73 16 35 H 0.02 0.44 7.74 -51.93 -0.40 0.04 16 36 H 0.25 6.80 8.31 -40.82 -0.34 6.46 16 37 H 0.09 2.25 6.03 -51.93 -0.31 1.94 16 38 H 0.02 0.55 6.65 -51.93 -0.35 0.21 16 39 H 0.38 5.13 9.08 45.56 0.41 5.54 16 40 H 0.19 2.42 7.50 -52.48 -0.39 2.03 16 LS Contribution 332.06 15.07 5.00 5.00 Total: -1.00 -32.94 332.06 -6.12 -39.06 By element: Atomic # 1 Polarization: 15.55 SS G_CDS: -4.59 Total: 10.96 kcal Atomic # 6 Polarization: 10.64 SS G_CDS: -1.12 Total: 9.52 kcal Atomic # 7 Polarization: -59.11 SS G_CDS: -0.01 Total: -59.12 kcal Atomic # 8 Polarization: -20.93 SS G_CDS: -0.38 Total: -21.31 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.03 Total: 15.89 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -32.94 -6.12 -39.06 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090062173.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.883 kcal (2) G-P(sol) polarization free energy of solvation -32.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.056 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds