Wall clock time and date at job start Tue Mar 31 2020 04:44:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34264 * 125.75411 * 2 1 4 4 C 1.38044 * 107.41676 * 179.97438 * 3 2 1 5 5 C 1.47427 * 126.41301 * 179.97438 * 4 3 2 6 6 O 1.21602 * 119.99978 * 359.97438 * 5 4 3 7 7 N 1.34775 * 120.00217 * 180.02562 * 5 4 3 8 8 C 1.46498 * 120.00364 * 180.02562 * 7 5 4 9 9 H 1.08997 * 109.46019 * 35.01619 * 8 7 5 10 10 C 1.53044 * 109.45479 * 275.06527 * 8 7 5 11 11 C 1.53198 * 109.30986 * 301.33923 * 10 8 7 12 12 N 1.46928 * 108.77662 * 305.36644 * 11 10 8 13 13 C 1.36936 * 120.62954 * 233.63016 * 12 11 10 14 14 H 1.08001 * 119.99951 * 27.66857 * 13 12 11 15 15 C 1.38812 * 119.99549 * 207.66988 * 13 12 11 16 16 N 1.31620 * 120.00514 * 17.36459 * 15 13 12 17 17 Si 1.86805 * 119.99690 * 197.36146 * 15 13 12 18 18 H 1.48499 * 109.47138 * 89.99962 * 17 15 13 19 19 H 1.48496 * 109.46975 * 210.00006 * 17 15 13 20 20 H 1.48503 * 109.47099 * 330.00105 * 17 15 13 21 21 C 1.46919 * 118.73612 * 53.61219 * 12 11 10 22 22 C 1.53038 * 109.46173 * 154.99625 * 8 7 5 23 23 H 1.09000 * 109.49196 * 178.63521 * 22 8 7 24 24 O 1.42897 * 109.49631 * 298.69674 * 22 8 7 25 25 C 1.41285 * 107.17161 * 0.22669 * 4 3 2 26 26 N 1.30446 * 108.02385 * 359.61623 * 25 4 3 27 27 H 1.09004 * 109.46847 * 90.00177 * 1 2 3 28 28 H 1.09002 * 109.47044 * 209.99974 * 1 2 3 29 29 H 1.08997 * 109.47029 * 330.00680 * 1 2 3 30 30 H 1.08001 * 126.29078 * 359.95663 * 3 2 1 31 31 H 0.97004 * 119.99513 * 0.26638 * 7 5 4 32 32 H 1.08998 * 109.50094 * 61.29413 * 10 8 7 33 33 H 1.09004 * 109.49383 * 181.39572 * 10 8 7 34 34 H 1.09008 * 109.58231 * 185.58238 * 11 10 8 35 35 H 1.08997 * 109.58505 * 65.15983 * 11 10 8 36 36 H 0.96996 * 119.99819 * 180.02562 * 16 15 13 37 37 H 1.09002 * 109.58582 * 186.59715 * 21 12 11 38 38 H 1.09003 * 109.70412 * 66.24806 * 21 12 11 39 39 H 0.96701 * 113.99782 * 179.97438 * 24 22 8 40 40 H 1.08006 * 125.98814 * 179.73647 * 25 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2495 1.0896 0.0000 4 6 3.5599 0.6553 0.0006 5 6 4.7638 1.5061 0.0003 6 8 4.6525 2.7171 -0.0011 7 7 5.9878 0.9419 0.0004 8 6 7.1842 1.7874 0.0007 9 1 6.9949 2.6843 0.5904 10 6 7.5271 2.1858 -1.4367 11 6 7.7588 0.9220 -2.2710 12 7 8.7834 0.1011 -1.6115 13 6 9.8919 -0.3162 -2.2987 14 1 10.2653 0.2678 -3.1270 15 6 10.5356 -1.4897 -1.9308 16 7 9.9168 -2.3700 -1.1728 17 14 12.2801 -1.8197 -2.5115 18 1 13.2430 -1.2738 -1.5215 19 1 12.4876 -3.2836 -2.6487 20 1 12.4966 -1.1637 -3.8261 21 6 8.5962 -0.2633 -0.2006 22 6 8.3552 1.0137 0.6107 23 1 9.2514 1.6336 0.5890 24 8 8.0464 0.6689 1.9626 25 6 3.5311 -0.7573 -0.0044 26 7 2.2827 -1.1356 0.0006 27 1 -0.3633 0.0000 -1.0277 28 1 -0.3633 -0.8900 0.5138 29 1 -0.3633 0.8900 0.5137 30 1 1.9166 2.1170 -0.0007 31 1 6.0765 -0.0240 -0.0032 32 1 6.7022 2.7569 -1.8627 33 1 8.4314 2.7944 -1.4395 34 1 8.0996 1.2001 -3.2684 35 1 6.8295 0.3572 -2.3445 36 1 10.3668 -3.1898 -0.9154 37 1 9.4895 -0.7674 0.1683 38 1 7.7362 -0.9259 -0.1031 39 1 8.7459 0.1753 2.4122 40 1 4.3919 -1.4096 -0.0093 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001090062173.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:44:12 Heat of formation + Delta-G solvation = -6.287350 kcal Electronic energy + Delta-G solvation = -24261.830903 eV Core-core repulsion = 20692.124569 eV Total energy + Delta-G solvation = -3569.706333 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.148 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.34397 -40.86354 -39.06031 -36.81880 -35.59765 -34.44253 -33.53479 -31.70594 -30.97049 -30.39649 -27.99844 -27.04498 -24.39910 -23.71304 -23.36727 -22.01651 -21.28959 -20.14336 -19.14620 -18.66736 -18.03922 -17.06533 -16.71018 -16.67515 -16.52449 -15.87120 -15.72155 -15.51949 -15.38026 -14.91474 -14.88417 -14.33016 -13.88589 -13.81275 -13.51932 -13.46250 -13.41652 -13.21060 -12.83052 -12.65589 -12.63736 -12.15161 -12.07565 -11.93257 -11.79305 -11.21680 -10.95438 -10.79177 -10.57622 -10.55459 -10.03798 -9.60712 -8.68039 -7.87057 -5.32407 0.56410 1.13450 1.47370 1.49653 1.52001 1.59665 2.38534 2.51702 2.52554 3.18212 3.29918 3.52872 3.70252 3.83022 3.97370 4.15008 4.17403 4.22385 4.31330 4.40961 4.44300 4.50930 4.58880 4.69626 4.71627 4.77372 4.97938 5.02529 5.12639 5.20564 5.34902 5.37454 5.62787 5.63864 5.68636 5.90312 6.37589 6.48007 6.69350 6.86969 7.15286 7.35064 7.83215 8.35038 9.18402 Molecular weight = 294.15amu Principal moments of inertia in cm(-1) A = 0.022118 B = 0.004062 C = 0.003825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1265.639885 B = 6892.068460 C = 7319.100508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.361 5.361 3 C 0.137 3.863 4 C -0.317 4.317 5 C 0.595 3.405 6 O -0.591 6.591 7 N -0.700 5.700 8 C 0.169 3.831 9 H 0.076 0.924 10 C -0.131 4.131 11 C 0.147 3.853 12 N -0.602 5.602 13 C -0.265 4.265 14 H 0.067 0.933 15 C -0.042 4.042 16 N -0.928 5.928 17 Si 0.963 3.037 18 H -0.285 1.285 19 H -0.297 1.297 20 H -0.272 1.272 21 C 0.157 3.843 22 C 0.084 3.916 23 H 0.063 0.937 24 O -0.573 6.573 25 C 0.081 3.919 26 N -0.324 5.324 27 H 0.094 0.906 28 H 0.097 0.903 29 H 0.122 0.878 30 H 0.215 0.785 31 H 0.403 0.597 32 H 0.072 0.928 33 H 0.076 0.924 34 H 0.056 0.944 35 H 0.017 0.983 36 H 0.251 0.749 37 H 0.065 0.935 38 H 0.012 0.988 39 H 0.391 0.609 40 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.281 5.971 4.096 16.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.139 5.139 3 C -0.016 4.016 4 C -0.331 4.331 5 C 0.384 3.616 6 O -0.474 6.474 7 N -0.350 5.350 8 C 0.064 3.936 9 H 0.094 0.906 10 C -0.171 4.171 11 C 0.021 3.979 12 N -0.326 5.326 13 C -0.395 4.395 14 H 0.085 0.915 15 C -0.238 4.238 16 N -0.574 5.574 17 Si 0.792 3.208 18 H -0.211 1.211 19 H -0.224 1.224 20 H -0.197 1.197 21 C 0.031 3.969 22 C 0.023 3.977 23 H 0.081 0.919 24 O -0.380 6.380 25 C -0.106 4.106 26 N -0.144 5.144 27 H 0.112 0.888 28 H 0.116 0.884 29 H 0.140 0.860 30 H 0.231 0.769 31 H 0.239 0.761 32 H 0.090 0.910 33 H 0.094 0.906 34 H 0.074 0.926 35 H 0.035 0.965 36 H 0.060 0.940 37 H 0.083 0.917 38 H 0.030 0.970 39 H 0.240 0.760 40 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges -16.828 5.948 4.004 18.291 hybrid contribution 2.240 -0.678 -0.198 2.349 sum -14.587 5.270 3.806 15.970 Atomic orbital electron populations 1.22421 0.70693 1.06728 1.05414 1.48824 1.08694 1.02992 1.53401 1.23320 0.89341 0.94823 0.94121 1.20289 0.93826 0.93634 1.25398 1.17476 0.82791 0.86677 0.74676 1.90686 1.87430 1.15290 1.54010 1.45723 1.04734 1.10594 1.73904 1.20708 0.83485 0.93243 0.96129 0.90617 1.22254 1.01664 0.98559 0.94628 1.20971 0.90988 0.90740 0.95188 1.44162 1.21463 1.60106 1.06907 1.19499 1.03110 1.02790 1.14119 0.91519 1.25691 1.02376 0.94868 1.00907 1.70145 1.36751 1.08893 1.41582 0.85330 0.80849 0.76296 0.78313 1.21131 1.22370 1.19711 1.21204 0.99592 0.92399 0.83734 1.22600 0.95973 0.97178 0.81944 0.91927 1.86405 1.48235 1.78321 1.25022 1.24243 0.95689 0.94143 0.96561 1.77135 1.02167 1.09155 1.25961 0.88778 0.88388 0.85994 0.76864 0.76104 0.90958 0.90556 0.92577 0.96544 0.93993 0.91653 0.97035 0.76020 0.78978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.79 11.44 127.77 1.46 2.25 16 2 N -0.36 -7.37 3.98 -367.77 -1.46 -8.83 16 3 C 0.14 3.05 11.30 84.28 0.95 4.00 16 4 C -0.32 -9.15 6.13 -20.15 -0.12 -9.27 16 5 C 0.59 20.34 7.78 86.66 0.67 21.01 16 6 O -0.59 -22.84 16.56 -4.04 -0.07 -22.90 16 7 N -0.70 -24.11 4.14 -445.68 -1.85 -25.95 16 8 C 0.17 6.05 2.47 45.02 0.11 6.16 16 9 H 0.08 2.80 7.58 -2.39 -0.02 2.78 16 10 C -0.13 -4.62 5.77 30.67 0.18 -4.45 16 11 C 0.15 5.97 6.26 86.36 0.54 6.51 16 12 N -0.60 -28.45 2.99 -699.09 -2.09 -30.55 16 13 C -0.27 -13.91 9.58 84.03 0.81 -13.10 16 14 H 0.07 3.45 7.89 -2.91 -0.02 3.42 16 15 C -0.04 -2.24 4.91 84.86 0.42 -1.83 16 16 N -0.93 -51.64 11.19 21.65 0.24 -51.40 16 17 Si 0.96 43.11 29.59 68.60 2.03 45.14 16 18 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 19 H -0.30 -13.48 7.11 99.48 0.71 -12.77 16 20 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 21 C 0.16 6.93 4.64 86.36 0.40 7.33 16 22 C 0.08 3.08 3.36 30.67 0.10 3.18 16 23 H 0.06 2.29 8.14 -2.39 -0.02 2.28 16 24 O -0.57 -19.15 13.21 -148.98 -1.97 -21.11 16 25 C 0.08 2.27 11.50 85.65 0.99 3.26 16 26 N -0.32 -8.76 12.50 -56.27 -0.70 -9.46 16 27 H 0.09 0.62 8.14 -2.38 -0.02 0.60 16 28 H 0.10 0.82 8.14 -2.39 -0.02 0.81 16 29 H 0.12 0.37 8.14 -2.39 -0.02 0.35 16 30 H 0.21 3.40 8.06 -2.91 -0.02 3.38 16 31 H 0.40 13.93 5.82 -92.71 -0.54 13.39 16 32 H 0.07 2.47 8.14 -2.39 -0.02 2.45 16 33 H 0.08 2.59 8.14 -2.38 -0.02 2.57 16 34 H 0.06 2.26 7.93 -2.38 -0.02 2.24 16 35 H 0.02 0.69 7.74 -2.39 -0.02 0.67 16 36 H 0.25 13.61 8.31 -92.71 -0.77 12.84 16 37 H 0.07 3.25 6.03 -2.39 -0.01 3.23 16 38 H 0.01 0.54 6.65 -2.39 -0.02 0.53 16 39 H 0.39 10.35 9.08 -74.06 -0.67 9.67 16 40 H 0.19 5.03 7.50 -2.91 -0.02 5.01 16 Total: -1.00 -69.95 332.06 0.50 -69.45 By element: Atomic # 1 Polarization: 30.70 SS G_CDS: -0.13 Total: 30.57 kcal Atomic # 6 Polarization: 18.55 SS G_CDS: 6.50 Total: 25.05 kcal Atomic # 7 Polarization: -120.33 SS G_CDS: -5.87 Total: -126.19 kcal Atomic # 8 Polarization: -41.98 SS G_CDS: -2.03 Total: -44.02 kcal Atomic # 14 Polarization: 43.11 SS G_CDS: 2.03 Total: 45.14 kcal Total: -69.95 0.50 -69.45 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090062173.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.160 kcal (2) G-P(sol) polarization free energy of solvation -69.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.447 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds