Wall clock time and date at job start Tue Mar 31 2020 03:55:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 110.64202 * 2 1 4 4 C 1.54322 * 110.71941 * 236.85888 * 2 1 3 5 5 N 1.47018 * 107.27336 * 219.26699 * 4 2 1 6 6 C 1.34780 * 125.64824 * 178.90717 * 5 4 2 7 7 O 1.21506 * 119.99607 * 180.02562 * 6 5 4 8 8 C 1.48273 * 120.00076 * 0.02562 * 6 5 4 9 9 C 1.47487 * 128.71218 * 179.70300 * 8 6 5 10 10 N 1.30646 * 102.71916 * 179.90399 * 9 8 6 11 11 O 1.20843 * 109.61709 * 0.37004 * 10 9 8 12 12 N 1.20902 * 115.90540 * 359.73012 * 11 10 9 13 13 C 1.47426 * 108.70104 * 358.94171 * 5 4 2 14 14 C 1.54909 * 104.83381 * 24.12870 * 13 5 4 15 15 H 1.08997 * 111.00194 * 81.06198 * 14 13 5 16 16 C 1.53003 * 111.00221 * 204.91626 * 14 13 5 17 17 C 1.52990 * 109.47216 * 287.19719 * 16 14 13 18 18 N 1.46504 * 109.47257 * 180.02562 * 17 16 14 19 19 C 1.36941 * 120.00132 * 179.97438 * 18 17 16 20 20 H 1.08002 * 120.00064 * 359.97438 * 19 18 17 21 21 C 1.38804 * 119.99810 * 179.97438 * 19 18 17 22 22 N 1.31622 * 120.00541 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 120.00209 * 179.97438 * 21 19 18 24 24 H 1.48507 * 109.47043 * 60.00284 * 23 21 19 25 25 H 1.48498 * 109.47808 * 180.02562 * 23 21 19 26 26 H 1.48500 * 109.46989 * 300.00620 * 23 21 19 27 27 H 1.09004 * 109.47208 * 179.30358 * 1 2 3 28 28 H 1.09004 * 109.46995 * 299.29920 * 1 2 3 29 29 H 1.08998 * 109.47298 * 59.29464 * 1 2 3 30 30 H 1.08998 * 109.88021 * 338.68403 * 4 2 1 31 31 H 1.09004 * 109.88163 * 99.84820 * 4 2 1 32 32 H 1.08004 * 128.64005 * 0.03541 * 9 8 6 33 33 H 1.08998 * 110.36876 * 142.97187 * 13 5 4 34 34 H 1.09009 * 110.36320 * 265.17860 * 13 5 4 35 35 H 1.08999 * 109.46712 * 47.20043 * 16 14 13 36 36 H 1.08996 * 109.46823 * 167.19175 * 16 14 13 37 37 H 1.09010 * 109.47116 * 299.99928 * 17 16 14 38 38 H 1.08996 * 109.47668 * 59.99974 * 17 16 14 39 39 H 0.97000 * 119.99409 * 359.97438 * 18 17 16 40 40 H 0.96991 * 120.00447 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9143 1.0200 0.0000 4 6 2.0760 -0.7891 -1.2086 5 7 3.2470 -1.5461 -0.7427 6 6 3.9948 -2.3778 -1.4949 7 8 4.9443 -2.9541 -1.0023 8 6 3.6588 -2.5894 -2.9235 9 6 4.3412 -3.4416 -3.9151 10 7 3.6303 -3.2523 -4.9948 11 8 2.7342 -2.4764 -4.7597 12 7 2.6803 -2.0595 -3.6261 13 6 3.4673 -1.2456 0.6836 14 6 2.0828 -0.7949 1.2124 15 1 1.4514 -1.6547 1.4365 16 6 2.2314 0.1081 2.4386 17 6 2.6585 -0.7333 3.6428 18 7 2.8002 0.1313 4.8171 19 6 3.1765 -0.4040 6.0201 20 1 3.3683 -1.4635 6.1033 21 6 3.3113 0.4153 7.1324 22 7 3.0770 1.7065 7.0311 23 14 3.8238 -0.3148 8.7736 24 1 5.1568 -0.9550 8.6360 25 1 3.8943 0.7617 9.7941 26 1 2.8275 -1.3319 9.1957 27 1 -0.3634 -1.0276 -0.0125 28 1 -0.3633 0.5029 0.8962 29 1 -0.3634 0.5247 -0.8836 30 1 1.3140 -1.4753 -1.5781 31 1 2.3711 -0.0991 -1.9991 32 1 5.2108 -4.0680 -3.7814 33 1 3.8031 -2.1379 1.2119 34 1 4.1970 -0.4432 0.7939 35 1 2.9869 0.8685 2.2403 36 1 1.2777 0.5906 2.6522 37 1 1.9029 -1.4937 3.8411 38 1 3.6122 -1.2158 3.4293 39 1 2.6275 1.0829 4.7423 40 1 3.1709 2.2790 7.8085 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001104816730.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:55:14 Heat of formation + Delta-G solvation = 90.444122 kcal Electronic energy + Delta-G solvation = -23175.456721 eV Core-core repulsion = 19609.944979 eV Total energy + Delta-G solvation = -3565.511742 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.148 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -47.31291 -40.49452 -38.33708 -35.39694 -35.04013 -34.83975 -33.37365 -32.11889 -30.30963 -27.95575 -26.71195 -25.92268 -24.54393 -23.88382 -22.44156 -20.90568 -20.38911 -20.17545 -19.43756 -18.49046 -17.71190 -17.15003 -16.47780 -15.91269 -15.28317 -14.80792 -14.75052 -14.44750 -13.93917 -13.43861 -13.37326 -13.27600 -13.15803 -12.96056 -12.63974 -12.46916 -12.29939 -11.79357 -11.74831 -11.48578 -11.20285 -11.16713 -11.06438 -10.83709 -10.70377 -10.67003 -10.48582 -10.31946 -10.00389 -9.67218 -9.01517 -8.86379 -6.92244 -5.76345 -3.05099 0.35974 0.92059 2.16782 2.58497 2.99700 3.09641 3.44815 3.47846 3.49007 3.50121 4.13446 4.29453 4.36972 4.47499 4.59951 4.64841 4.93158 5.01062 5.16572 5.27261 5.29959 5.41396 5.51079 5.57528 5.66156 5.71160 5.75516 5.83509 5.94877 5.96636 6.07729 6.23199 6.33906 6.34479 6.81520 6.85235 7.01111 7.54129 7.70066 8.00244 8.42911 9.53816 10.11735 10.46087 11.46614 Molecular weight = 294.15amu Principal moments of inertia in cm(-1) A = 0.029582 B = 0.002778 C = 0.002584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 946.292888 B =10075.737296 C =10833.519254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.100 4.100 3 H 0.090 0.910 4 C 0.103 3.897 5 N -0.598 5.598 6 C 0.614 3.386 7 O -0.513 6.513 8 C -0.035 4.035 9 C 0.038 3.962 10 N -0.354 5.354 11 O 0.339 5.661 12 N -0.318 5.318 13 C 0.110 3.890 14 C -0.090 4.090 15 H 0.088 0.912 16 C -0.114 4.114 17 C 0.151 3.849 18 N -0.734 5.734 19 C -0.240 4.240 20 H 0.070 0.930 21 C -0.014 4.014 22 N -0.935 5.935 23 Si 0.907 3.093 24 H -0.286 1.286 25 H -0.291 1.291 26 H -0.286 1.286 27 H 0.057 0.943 28 H 0.067 0.933 29 H 0.057 0.943 30 H 0.076 0.924 31 H 0.073 0.927 32 H 0.228 0.772 33 H 0.088 0.912 34 H 0.080 0.920 35 H 0.066 0.934 36 H 0.071 0.929 37 H 0.018 0.982 38 H 0.019 0.981 39 H 0.383 0.617 40 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.174 -6.106 -24.191 25.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.119 4.119 3 H 0.108 0.892 4 C -0.019 4.019 5 N -0.331 5.331 6 C 0.399 3.601 7 O -0.387 6.387 8 C -0.200 4.200 9 C -0.148 4.148 10 N -0.078 5.078 11 O 0.114 5.886 12 N -0.039 5.039 13 C -0.010 4.010 14 C -0.110 4.110 15 H 0.107 0.893 16 C -0.152 4.152 17 C 0.024 3.976 18 N -0.378 5.378 19 C -0.371 4.371 20 H 0.088 0.912 21 C -0.210 4.210 22 N -0.584 5.584 23 Si 0.738 3.262 24 H -0.212 1.212 25 H -0.217 1.217 26 H -0.213 1.213 27 H 0.076 0.924 28 H 0.086 0.914 29 H 0.076 0.924 30 H 0.094 0.906 31 H 0.091 0.909 32 H 0.244 0.756 33 H 0.106 0.894 34 H 0.098 0.902 35 H 0.085 0.915 36 H 0.089 0.911 37 H 0.036 0.964 38 H 0.037 0.963 39 H 0.217 0.783 40 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -3.365 -6.216 -24.617 25.612 hybrid contribution 0.912 -0.345 1.487 1.779 sum -2.452 -6.561 -23.130 24.167 Atomic orbital electron populations 1.21744 0.93381 1.02236 1.02484 1.22312 0.96752 0.99630 0.93239 0.89190 1.22333 0.87123 0.94992 0.97473 1.48328 1.29547 1.42953 1.12295 1.16027 0.82642 0.79848 0.81631 1.90877 1.27972 1.48473 1.71415 1.26214 0.94807 1.00148 0.98860 1.27755 1.01837 0.99888 0.85322 1.75085 1.00434 1.08025 1.24217 1.85096 1.38748 1.41613 1.23174 1.75484 1.18925 1.16570 0.92933 1.22584 0.98259 1.02106 0.78097 1.22458 0.94899 0.99041 0.94553 0.89344 1.21686 1.02329 0.97966 0.93225 1.20678 0.97260 0.93163 0.86515 1.42353 1.82949 1.07302 1.05207 1.19194 1.38068 0.93013 0.86825 0.91245 1.24740 1.02621 0.95543 0.98124 1.69644 1.55888 1.03102 1.29733 0.86262 0.78464 0.77708 0.83732 1.21232 1.21672 1.21265 0.92424 0.91408 0.92353 0.90615 0.90870 0.75571 0.89388 0.90167 0.91500 0.91071 0.96432 0.96339 0.78314 0.93465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.15 9.15 37.16 0.34 -0.81 16 2 C -0.10 -0.93 3.01 -88.79 -0.27 -1.19 16 3 H 0.09 0.82 8.04 -51.93 -0.42 0.40 16 4 C 0.10 0.96 5.19 -3.07 -0.02 0.94 16 5 N -0.60 -6.85 3.33 -171.47 -0.57 -7.42 16 6 C 0.61 7.54 7.87 -12.13 -0.10 7.44 16 7 O -0.51 -7.72 17.30 5.36 0.09 -7.62 16 8 C -0.03 -0.35 7.35 -80.07 -0.59 -0.93 16 9 C 0.04 0.30 12.63 -14.29 -0.18 0.12 16 10 N -0.35 -3.02 12.22 30.72 0.38 -2.64 16 11 O 0.34 2.92 11.65 27.26 0.32 3.24 16 12 N -0.32 -2.96 10.17 33.49 0.34 -2.61 16 13 C 0.11 1.35 5.86 -2.53 -0.01 1.34 16 14 C -0.09 -1.03 2.46 -88.47 -0.22 -1.25 16 15 H 0.09 1.02 8.05 -51.93 -0.42 0.60 16 16 C -0.11 -1.65 4.84 -26.73 -0.13 -1.78 16 17 C 0.15 2.93 6.16 -4.04 -0.02 2.91 16 18 N -0.73 -18.51 5.60 -59.91 -0.34 -18.85 16 19 C -0.24 -6.76 9.99 -15.06 -0.15 -6.91 16 20 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 21 C -0.01 -0.42 5.50 -17.43 -0.10 -0.51 16 22 N -0.93 -28.33 13.06 55.49 0.72 -27.61 16 23 Si 0.91 22.52 29.55 -169.99 -5.02 17.50 16 24 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 25 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 26 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 27 H 0.06 0.46 8.12 -51.93 -0.42 0.04 16 28 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.08 0.68 7.41 -51.93 -0.38 0.29 16 31 H 0.07 0.64 7.86 -51.93 -0.41 0.24 16 32 H 0.23 1.11 8.06 -52.48 -0.42 0.68 16 33 H 0.09 1.18 8.04 -51.93 -0.42 0.76 16 34 H 0.08 1.00 7.91 -51.92 -0.41 0.59 16 35 H 0.07 0.98 7.96 -51.93 -0.41 0.57 16 36 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 37 H 0.02 0.35 8.14 -51.92 -0.42 -0.07 16 38 H 0.02 0.37 7.75 -51.93 -0.40 -0.04 16 39 H 0.38 10.09 7.67 -40.82 -0.31 9.77 16 40 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 LS Contribution 339.79 15.07 5.12 5.12 Total: -1.00 -32.22 339.79 -6.07 -38.29 By element: Atomic # 1 Polarization: 8.92 SS G_CDS: -5.67 Total: 3.26 kcal Atomic # 6 Polarization: 0.80 SS G_CDS: -1.44 Total: -0.64 kcal Atomic # 7 Polarization: -59.67 SS G_CDS: 0.53 Total: -59.14 kcal Atomic # 8 Polarization: -4.79 SS G_CDS: 0.41 Total: -4.38 kcal Atomic # 14 Polarization: 22.52 SS G_CDS: -5.02 Total: 17.50 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -32.22 -6.07 -38.29 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001104816730.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.732 kcal (2) G-P(sol) polarization free energy of solvation -32.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.288 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds