Wall clock time and date at job start Tue Mar 31 2020 03:53:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09005 * 109.45630 * 2 1 4 4 C 1.53035 * 109.44764 * 240.03350 * 2 1 3 5 5 C 1.53196 * 109.31084 * 178.61988 * 4 2 1 6 6 N 1.46932 * 108.77315 * 54.63598 * 5 4 2 7 7 C 1.34781 * 120.62952 * 126.66808 * 6 5 4 8 8 O 1.21499 * 119.99691 * 174.51441 * 7 6 5 9 9 C 1.48277 * 120.00086 * 354.51154 * 7 6 5 10 10 C 1.47483 * 128.71148 * 185.79329 * 9 7 6 11 11 N 1.30648 * 102.71777 * 179.97438 * 10 9 7 12 12 O 1.20839 * 109.61917 * 0.02562 * 11 10 9 13 13 N 1.20910 * 115.90525 * 359.69167 * 12 11 10 14 14 C 1.46922 * 118.73686 * 306.38944 * 6 5 4 15 15 C 1.53039 * 109.46028 * 119.97036 * 2 1 3 16 16 H 1.09001 * 109.49524 * 61.41883 * 15 2 1 17 17 C 1.53003 * 109.52514 * 301.34074 * 15 2 1 18 18 N 1.46496 * 109.47401 * 175.14521 * 17 15 2 19 19 C 1.36935 * 120.00441 * 179.97438 * 18 17 15 20 20 H 1.07999 * 119.99501 * 359.97438 * 19 18 17 21 21 C 1.38808 * 120.00397 * 180.02562 * 19 18 17 22 22 N 1.31625 * 119.99848 * 359.97438 * 21 19 18 23 23 Si 1.86797 * 120.00439 * 180.02562 * 21 19 18 24 24 H 1.48508 * 109.46710 * 359.97438 * 23 21 19 25 25 H 1.48499 * 109.47167 * 119.99848 * 23 21 19 26 26 H 1.48495 * 109.47463 * 240.00113 * 23 21 19 27 27 H 1.09006 * 109.47266 * 300.03212 * 1 2 3 28 28 H 1.08996 * 109.47297 * 60.02678 * 1 2 3 29 29 H 1.09000 * 109.47264 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.49712 * 298.57085 * 4 2 1 31 31 H 1.09000 * 109.50089 * 58.63865 * 4 2 1 32 32 H 1.09001 * 109.58906 * 294.84996 * 5 4 2 33 33 H 1.09005 * 109.58639 * 174.41792 * 5 4 2 34 34 H 1.07996 * 128.64568 * 0.02562 * 10 9 7 35 35 H 1.09004 * 109.58471 * 173.39919 * 14 6 5 36 36 H 1.09004 * 109.58704 * 293.82129 * 14 6 5 37 37 H 1.09004 * 109.46879 * 295.14616 * 17 15 2 38 38 H 1.08995 * 109.47156 * 55.14331 * 17 15 2 39 39 H 0.97006 * 120.00155 * 359.97438 * 18 17 15 40 40 H 0.96998 * 119.99623 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8930 1.0278 0.0000 4 6 2.0395 -0.7208 -1.2501 5 6 3.5710 -0.6889 -1.2645 6 7 4.0675 -1.2493 -0.0002 7 6 4.9655 -2.2544 -0.0004 8 8 5.4433 -2.6422 1.0473 9 6 5.3700 -2.8870 -1.2789 10 6 6.2358 -4.0615 -1.4936 11 7 6.2502 -4.1743 -2.7951 12 8 5.5729 -3.3019 -3.2854 13 7 5.0421 -2.5445 -2.5066 14 6 3.5713 -0.6889 1.2640 15 6 2.0398 -0.7208 1.2500 16 1 1.6975 -1.7556 1.2383 17 6 1.5030 -0.0196 2.4994 18 7 1.8952 -0.7765 3.6908 19 6 1.5254 -0.3368 4.9339 20 1 0.9449 0.5682 5.0359 21 6 1.8975 -1.0537 6.0628 22 7 2.6054 -2.1564 5.9384 23 14 1.3924 -0.4544 7.7584 24 1 0.6071 0.7992 7.6266 25 1 0.5628 -1.4913 8.4231 26 1 2.6061 -0.1941 8.5733 27 1 -0.3634 0.5144 0.8897 28 1 -0.3634 0.5134 -0.8902 29 1 -0.3634 -1.0277 0.0005 30 1 1.6972 -1.7556 -1.2383 31 1 1.6564 -0.2210 -2.1398 32 1 3.9142 0.3406 -1.3675 33 1 3.9412 -1.2849 -2.0987 34 1 6.7334 -4.6761 -0.7580 35 1 3.9416 -1.2850 2.0982 36 1 3.9144 0.3405 1.3671 37 1 1.9160 0.9876 2.5565 38 1 0.4158 0.0361 2.4460 39 1 2.4169 -1.5891 3.5992 40 1 2.8657 -2.6571 6.7273 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001133181937.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:53:58 Heat of formation + Delta-G solvation = 101.718079 kcal Electronic energy + Delta-G solvation = -24087.939672 eV Core-core repulsion = 20522.916805 eV Total energy + Delta-G solvation = -3565.022867 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.148 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -47.16570 -40.37005 -38.12371 -35.49979 -34.82424 -34.58303 -33.72163 -31.90558 -29.87844 -28.55779 -26.62274 -25.17737 -24.48588 -23.23572 -23.04525 -21.28722 -20.61537 -19.51229 -19.28355 -18.38262 -17.54561 -16.99269 -16.14828 -15.37948 -15.15292 -14.88201 -14.43988 -14.33069 -13.93728 -13.73356 -13.42061 -13.25244 -12.99467 -12.73502 -12.56675 -12.29505 -11.88818 -11.70537 -11.61997 -11.34601 -11.02486 -10.99876 -10.84613 -10.83553 -10.64307 -10.44923 -10.23309 -10.14134 -9.87838 -9.61414 -8.87881 -8.69496 -6.89861 -5.73330 -3.02986 0.49587 1.08279 2.39740 2.82344 3.16083 3.21774 3.45022 3.50217 3.52836 3.65876 4.30131 4.50391 4.58876 4.79085 4.81370 4.86371 5.08111 5.11566 5.25348 5.53961 5.55537 5.59769 5.65579 5.71805 5.81431 5.89182 5.91521 5.99204 6.08654 6.17761 6.28366 6.40608 6.46894 6.49569 6.76897 6.84619 7.18571 7.72367 7.82889 8.16583 8.44526 9.55728 10.12983 10.47027 11.49134 Molecular weight = 294.15amu Principal moments of inertia in cm(-1) A = 0.019325 B = 0.004005 C = 0.003411 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1448.531044 B = 6989.427944 C = 8206.484874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.086 4.086 3 H 0.072 0.928 4 C -0.125 4.125 5 C 0.077 3.923 6 N -0.589 5.589 7 C 0.595 3.405 8 O -0.503 6.503 9 C -0.026 4.026 10 C 0.037 3.963 11 N -0.353 5.353 12 O 0.331 5.669 13 N -0.323 5.323 14 C 0.121 3.879 15 C -0.102 4.102 16 H 0.075 0.925 17 C 0.159 3.841 18 N -0.733 5.733 19 C -0.241 4.241 20 H 0.070 0.930 21 C -0.012 4.012 22 N -0.930 5.930 23 Si 0.905 3.095 24 H -0.281 1.281 25 H -0.292 1.292 26 H -0.292 1.292 27 H 0.065 0.935 28 H 0.050 0.950 29 H 0.053 0.947 30 H 0.065 0.935 31 H 0.076 0.924 32 H 0.072 0.928 33 H 0.117 0.883 34 H 0.228 0.772 35 H 0.107 0.893 36 H 0.073 0.927 37 H 0.020 0.980 38 H 0.029 0.971 39 H 0.384 0.616 40 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.095 1.003 -20.537 20.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.105 4.105 3 H 0.091 0.909 4 C -0.163 4.163 5 C -0.045 4.045 6 N -0.322 5.322 7 C 0.378 3.622 8 O -0.376 6.376 9 C -0.191 4.191 10 C -0.149 4.149 11 N -0.076 5.076 12 O 0.109 5.891 13 N -0.048 5.048 14 C 0.000 4.000 15 C -0.121 4.121 16 H 0.093 0.907 17 C 0.031 3.969 18 N -0.378 5.378 19 C -0.373 4.373 20 H 0.088 0.912 21 C -0.209 4.209 22 N -0.578 5.578 23 Si 0.737 3.263 24 H -0.206 1.206 25 H -0.219 1.219 26 H -0.219 1.219 27 H 0.084 0.916 28 H 0.069 0.931 29 H 0.072 0.928 30 H 0.084 0.916 31 H 0.094 0.906 32 H 0.090 0.910 33 H 0.134 0.866 34 H 0.245 0.755 35 H 0.125 0.875 36 H 0.091 0.909 37 H 0.037 0.963 38 H 0.047 0.953 39 H 0.218 0.782 40 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 3.122 1.019 -20.991 21.246 hybrid contribution 0.005 -0.089 1.886 1.888 sum 3.127 0.929 -19.105 19.381 Atomic orbital electron populations 1.21877 0.94813 1.01999 1.01790 1.21124 0.96134 0.99428 0.93834 0.90937 1.21949 0.94283 1.01559 0.98552 1.22524 0.95305 1.00266 0.86449 1.48040 1.41313 1.33724 1.09106 1.16650 0.80415 0.80202 0.84936 1.90916 1.53804 1.62560 1.30296 1.26436 1.00896 0.98191 0.93556 1.27765 0.98324 0.96526 0.92257 1.75068 1.11726 1.09642 1.11167 1.85089 1.42935 1.26971 1.34111 1.75168 1.14505 1.13813 1.01307 1.21906 0.94044 0.99534 0.84535 1.21735 0.93972 1.00975 0.95463 0.90662 1.20723 0.96953 0.94060 0.85165 1.42422 1.65339 1.29227 1.00830 1.19241 1.27874 1.06411 0.83725 0.91163 1.24748 1.00787 0.97506 0.97821 1.69681 1.42352 1.17353 1.28437 0.86142 0.77646 0.77729 0.84811 1.20586 1.21900 1.21871 0.91567 0.93139 0.92771 0.91609 0.90584 0.90958 0.86632 0.75538 0.87454 0.90868 0.96263 0.95343 0.78183 0.93527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.69 8.81 37.16 0.33 -1.36 16 2 C -0.09 -1.03 2.23 -90.58 -0.20 -1.23 16 3 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 4 C -0.13 -1.29 5.36 -26.61 -0.14 -1.43 16 5 C 0.08 0.84 6.35 -3.71 -0.02 0.81 16 6 N -0.59 -8.20 2.97 -173.71 -0.52 -8.71 16 7 C 0.59 8.86 7.71 -12.13 -0.09 8.77 16 8 O -0.50 -9.29 16.49 5.37 0.09 -9.20 16 9 C -0.03 -0.30 7.27 -80.07 -0.58 -0.88 16 10 C 0.04 0.36 12.63 -14.29 -0.18 0.18 16 11 N -0.35 -3.52 12.22 30.71 0.38 -3.14 16 12 O 0.33 3.23 11.65 27.26 0.32 3.55 16 13 N -0.32 -3.39 8.87 33.49 0.30 -3.09 16 14 C 0.12 1.94 5.50 -3.72 -0.02 1.92 16 15 C -0.10 -1.60 1.92 -90.50 -0.17 -1.77 16 16 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 17 C 0.16 3.08 5.41 -4.04 -0.02 3.05 16 18 N -0.73 -18.44 5.38 -59.91 -0.32 -18.76 16 19 C -0.24 -6.76 9.99 -15.06 -0.15 -6.91 16 20 H 0.07 1.91 7.83 -52.49 -0.41 1.49 16 21 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 22 N -0.93 -28.53 13.06 55.49 0.72 -27.81 16 23 Si 0.91 22.55 29.55 -169.99 -5.02 17.53 16 24 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 25 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 26 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 27 H 0.07 0.83 6.30 -51.93 -0.33 0.50 16 28 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.12 1.19 3.86 -66.54 -0.26 0.93 16 34 H 0.23 1.60 8.06 -52.49 -0.42 1.18 16 35 H 0.11 2.13 6.24 -51.93 -0.32 1.81 16 36 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 37 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16 38 H 0.03 0.56 6.15 -51.93 -0.32 0.24 16 39 H 0.38 10.32 6.89 -40.82 -0.28 10.04 16 40 H 0.25 7.56 8.31 -40.82 -0.34 7.22 16 LS Contribution 327.10 15.07 4.93 4.93 Total: -1.00 -31.97 327.10 -5.77 -37.74 By element: Atomic # 1 Polarization: 11.57 SS G_CDS: -5.28 Total: 6.29 kcal Atomic # 6 Polarization: 2.05 SS G_CDS: -1.36 Total: 0.69 kcal Atomic # 7 Polarization: -62.08 SS G_CDS: 0.56 Total: -61.52 kcal Atomic # 8 Polarization: -6.06 SS G_CDS: 0.41 Total: -5.65 kcal Atomic # 14 Polarization: 22.55 SS G_CDS: -5.02 Total: 17.53 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -31.97 -5.77 -37.74 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133181937.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.458 kcal (2) G-P(sol) polarization free energy of solvation -31.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 107.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.740 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds