Wall clock time and date at job start Tue Mar 31 2020 03:53:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09005 * 109.45630 * 2 1 4 4 C 1.53035 * 109.44764 * 240.03350 * 2 1 3 5 5 C 1.53196 * 109.31084 * 178.61988 * 4 2 1 6 6 N 1.46932 * 108.77315 * 54.63598 * 5 4 2 7 7 C 1.34781 * 120.62952 * 126.66808 * 6 5 4 8 8 O 1.21499 * 119.99691 * 174.51441 * 7 6 5 9 9 C 1.48277 * 120.00086 * 354.51154 * 7 6 5 10 10 C 1.47483 * 128.71148 * 185.79329 * 9 7 6 11 11 N 1.30648 * 102.71777 * 179.97438 * 10 9 7 12 12 O 1.20839 * 109.61917 * 0.02562 * 11 10 9 13 13 N 1.20910 * 115.90525 * 359.69167 * 12 11 10 14 14 C 1.46922 * 118.73686 * 306.38944 * 6 5 4 15 15 C 1.53039 * 109.46028 * 119.97036 * 2 1 3 16 16 H 1.09001 * 109.49524 * 61.41883 * 15 2 1 17 17 C 1.53003 * 109.52514 * 301.34074 * 15 2 1 18 18 N 1.46496 * 109.47401 * 175.14521 * 17 15 2 19 19 C 1.36935 * 120.00441 * 179.97438 * 18 17 15 20 20 H 1.07999 * 119.99501 * 359.97438 * 19 18 17 21 21 C 1.38808 * 120.00397 * 180.02562 * 19 18 17 22 22 N 1.31625 * 119.99848 * 359.97438 * 21 19 18 23 23 Si 1.86797 * 120.00439 * 180.02562 * 21 19 18 24 24 H 1.48508 * 109.46710 * 359.97438 * 23 21 19 25 25 H 1.48499 * 109.47167 * 119.99848 * 23 21 19 26 26 H 1.48495 * 109.47463 * 240.00113 * 23 21 19 27 27 H 1.09006 * 109.47266 * 300.03212 * 1 2 3 28 28 H 1.08996 * 109.47297 * 60.02678 * 1 2 3 29 29 H 1.09000 * 109.47264 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.49712 * 298.57085 * 4 2 1 31 31 H 1.09000 * 109.50089 * 58.63865 * 4 2 1 32 32 H 1.09001 * 109.58906 * 294.84996 * 5 4 2 33 33 H 1.09005 * 109.58639 * 174.41792 * 5 4 2 34 34 H 1.07996 * 128.64568 * 0.02562 * 10 9 7 35 35 H 1.09004 * 109.58471 * 173.39919 * 14 6 5 36 36 H 1.09004 * 109.58704 * 293.82129 * 14 6 5 37 37 H 1.09004 * 109.46879 * 295.14616 * 17 15 2 38 38 H 1.08995 * 109.47156 * 55.14331 * 17 15 2 39 39 H 0.97006 * 120.00155 * 359.97438 * 18 17 15 40 40 H 0.96998 * 119.99623 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8930 1.0278 0.0000 4 6 2.0395 -0.7208 -1.2501 5 6 3.5710 -0.6889 -1.2645 6 7 4.0675 -1.2493 -0.0002 7 6 4.9655 -2.2544 -0.0004 8 8 5.4433 -2.6422 1.0473 9 6 5.3700 -2.8870 -1.2789 10 6 6.2358 -4.0615 -1.4936 11 7 6.2502 -4.1743 -2.7951 12 8 5.5729 -3.3019 -3.2854 13 7 5.0421 -2.5445 -2.5066 14 6 3.5713 -0.6889 1.2640 15 6 2.0398 -0.7208 1.2500 16 1 1.6975 -1.7556 1.2383 17 6 1.5030 -0.0196 2.4994 18 7 1.8952 -0.7765 3.6908 19 6 1.5254 -0.3368 4.9339 20 1 0.9449 0.5682 5.0359 21 6 1.8975 -1.0537 6.0628 22 7 2.6054 -2.1564 5.9384 23 14 1.3924 -0.4544 7.7584 24 1 0.6071 0.7992 7.6266 25 1 0.5628 -1.4913 8.4231 26 1 2.6061 -0.1941 8.5733 27 1 -0.3634 0.5144 0.8897 28 1 -0.3634 0.5134 -0.8902 29 1 -0.3634 -1.0277 0.0005 30 1 1.6972 -1.7556 -1.2383 31 1 1.6564 -0.2210 -2.1398 32 1 3.9142 0.3406 -1.3675 33 1 3.9412 -1.2849 -2.0987 34 1 6.7334 -4.6761 -0.7580 35 1 3.9416 -1.2850 2.0982 36 1 3.9144 0.3405 1.3671 37 1 1.9160 0.9876 2.5565 38 1 0.4158 0.0361 2.4460 39 1 2.4169 -1.5891 3.5992 40 1 2.8657 -2.6571 6.7273 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001133181937.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:53:57 Heat of formation + Delta-G solvation = 80.386694 kcal Electronic energy + Delta-G solvation = -24088.864670 eV Core-core repulsion = 20522.916805 eV Total energy + Delta-G solvation = -3565.947865 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.148 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -48.02006 -41.53023 -39.34292 -36.82763 -35.95691 -35.61893 -34.96848 -33.55039 -31.52867 -29.59796 -27.95473 -26.53823 -25.37292 -24.97332 -24.01383 -22.63705 -21.75388 -20.64288 -20.13822 -19.28593 -19.15116 -18.46659 -17.37988 -16.74712 -16.53870 -16.04752 -15.61631 -15.53676 -15.42626 -15.18631 -14.58816 -14.49975 -14.29240 -14.10397 -13.81026 -13.42035 -13.06013 -12.88586 -12.79051 -12.68694 -12.48661 -12.46138 -12.16267 -11.95009 -11.91116 -11.88431 -11.80338 -11.63811 -11.26361 -11.06406 -10.92110 -9.87159 -8.98776 -7.94066 -5.23792 -0.43982 0.26814 1.33065 1.46711 1.47979 1.58010 1.71171 2.22660 2.40873 2.56075 2.77446 3.33502 3.39544 3.63667 3.66053 3.78337 3.82079 3.97438 4.17065 4.24676 4.40418 4.42851 4.53617 4.56258 4.69663 4.77490 4.86730 4.91437 4.94685 5.04638 5.10425 5.21676 5.22363 5.34072 5.46209 5.49845 5.55720 6.06441 6.27238 6.68603 7.32264 7.33059 8.09247 8.31002 9.29647 Molecular weight = 294.15amu Principal moments of inertia in cm(-1) A = 0.019325 B = 0.004005 C = 0.003411 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1448.531044 B = 6989.427944 C = 8206.484874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.079 4.079 3 H 0.087 0.913 4 C -0.118 4.118 5 C 0.074 3.926 6 N -0.587 5.587 7 C 0.591 3.409 8 O -0.551 6.551 9 C -0.044 4.044 10 C 0.048 3.952 11 N -0.354 5.354 12 O 0.347 5.653 13 N -0.312 5.312 14 C 0.128 3.872 15 C -0.089 4.089 16 H 0.053 0.947 17 C 0.158 3.842 18 N -0.748 5.748 19 C -0.243 4.243 20 H 0.079 0.921 21 C -0.077 4.077 22 N -0.971 5.971 23 Si 0.974 3.026 24 H -0.263 1.263 25 H -0.294 1.294 26 H -0.295 1.295 27 H 0.052 0.948 28 H 0.078 0.922 29 H 0.045 0.955 30 H 0.056 0.944 31 H 0.111 0.889 32 H 0.092 0.908 33 H 0.125 0.875 34 H 0.249 0.751 35 H 0.062 0.938 36 H 0.081 0.919 37 H 0.026 0.974 38 H 0.035 0.965 39 H 0.371 0.629 40 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.368 2.361 -22.778 23.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.098 4.098 3 H 0.105 0.895 4 C -0.156 4.156 5 C -0.047 4.047 6 N -0.319 5.319 7 C 0.377 3.623 8 O -0.428 6.428 9 C -0.208 4.208 10 C -0.137 4.137 11 N -0.077 5.077 12 O 0.121 5.879 13 N -0.034 5.034 14 C 0.006 3.994 15 C -0.108 4.108 16 H 0.072 0.928 17 C 0.031 3.969 18 N -0.391 5.391 19 C -0.375 4.375 20 H 0.097 0.903 21 C -0.269 4.269 22 N -0.622 5.622 23 Si 0.803 3.197 24 H -0.187 1.187 25 H -0.221 1.221 26 H -0.222 1.222 27 H 0.071 0.929 28 H 0.097 0.903 29 H 0.064 0.936 30 H 0.075 0.925 31 H 0.129 0.871 32 H 0.110 0.890 33 H 0.142 0.858 34 H 0.266 0.734 35 H 0.080 0.920 36 H 0.099 0.901 37 H 0.044 0.956 38 H 0.053 0.947 39 H 0.203 0.797 40 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 2.344 2.444 -23.279 23.524 hybrid contribution 0.220 -0.484 2.458 2.515 sum 2.564 1.961 -20.821 21.070 Atomic orbital electron populations 1.21851 0.94100 1.01737 1.02529 1.21111 0.96632 0.99737 0.92364 0.89501 1.21936 0.93613 1.01227 0.98837 1.22796 0.95790 1.01263 0.84842 1.48109 1.40883 1.33445 1.09463 1.16982 0.79943 0.79975 0.85450 1.90889 1.55590 1.64002 1.32282 1.25977 1.02681 0.99454 0.92695 1.28121 0.97331 0.95741 0.92520 1.75109 1.11922 1.09642 1.11076 1.85088 1.42434 1.26654 1.33696 1.75120 1.13910 1.13576 1.00744 1.21600 0.94323 0.99008 0.84502 1.21579 0.93478 0.99867 0.95914 0.92816 1.20908 0.97296 0.93940 0.84732 1.42671 1.65157 1.29274 1.01954 1.19690 1.26668 1.06177 0.84962 0.90306 1.25600 1.01603 0.97983 1.01746 1.69859 1.44343 1.18964 1.29038 0.85069 0.77071 0.77678 0.79921 1.18691 1.22129 1.22208 0.92925 0.90276 0.93561 0.92531 0.87084 0.89020 0.85797 0.73446 0.91967 0.90116 0.95601 0.94704 0.79745 0.94131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.96 8.81 71.98 0.63 -2.33 16 2 C -0.08 -1.72 2.23 -10.77 -0.02 -1.74 16 3 H 0.09 1.70 8.14 -2.38 -0.02 1.68 16 4 C -0.12 -2.07 5.36 30.67 0.16 -1.90 16 5 C 0.07 1.42 6.35 86.36 0.55 1.97 16 6 N -0.59 -16.23 2.97 -821.80 -2.44 -18.68 16 7 C 0.59 17.96 7.71 86.91 0.67 18.64 16 8 O -0.55 -21.52 16.49 -3.71 -0.06 -21.59 16 9 C -0.04 -1.01 7.27 44.29 0.32 -0.68 16 10 C 0.05 0.87 12.63 87.31 1.10 1.98 16 11 N -0.35 -6.36 12.22 -61.42 -0.75 -7.11 16 12 O 0.35 6.01 11.65 140.84 1.64 7.65 16 13 N -0.31 -5.92 8.87 -52.05 -0.46 -6.38 16 14 C 0.13 4.23 5.50 86.36 0.48 4.70 16 15 C -0.09 -2.79 1.92 -10.72 -0.02 -2.81 16 16 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 17 C 0.16 6.12 5.41 86.38 0.47 6.59 16 18 N -0.75 -38.69 5.38 -343.46 -1.85 -40.54 16 19 C -0.24 -13.77 9.99 84.03 0.84 -12.93 16 20 H 0.08 4.24 7.83 -2.91 -0.02 4.21 16 21 C -0.08 -4.54 5.50 84.86 0.47 -4.08 16 22 N -0.97 -61.63 13.06 21.65 0.28 -61.35 16 23 Si 0.97 46.98 29.55 68.60 2.03 49.01 16 24 H -0.26 -11.75 7.11 99.48 0.71 -11.05 16 25 H -0.29 -14.18 7.11 99.48 0.71 -13.48 16 26 H -0.29 -14.27 7.11 99.48 0.71 -13.56 16 27 H 0.05 1.22 6.30 -2.38 -0.02 1.20 16 28 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 29 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 30 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 31 H 0.11 1.28 8.14 -2.39 -0.02 1.26 16 32 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 33 H 0.13 2.21 3.86 -29.60 -0.11 2.10 16 34 H 0.25 3.21 8.06 -2.91 -0.02 3.19 16 35 H 0.06 2.66 6.24 -2.38 -0.01 2.64 16 36 H 0.08 2.50 8.14 -2.38 -0.02 2.48 16 37 H 0.03 0.99 8.14 -2.39 -0.02 0.97 16 38 H 0.04 1.34 6.15 -2.39 -0.01 1.32 16 39 H 0.37 20.99 6.89 -92.70 -0.64 20.35 16 40 H 0.25 15.36 8.31 -92.71 -0.77 14.59 16 Total: -1.00 -71.43 327.10 4.37 -67.06 By element: Atomic # 1 Polarization: 24.19 SS G_CDS: 0.33 Total: 24.52 kcal Atomic # 6 Polarization: 1.76 SS G_CDS: 5.65 Total: 7.41 kcal Atomic # 7 Polarization: -128.84 SS G_CDS: -5.22 Total: -134.06 kcal Atomic # 8 Polarization: -15.52 SS G_CDS: 1.58 Total: -13.94 kcal Atomic # 14 Polarization: 46.98 SS G_CDS: 2.03 Total: 49.01 kcal Total: -71.43 4.37 -67.06 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133181937.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.450 kcal (2) G-P(sol) polarization free energy of solvation -71.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.063 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds