Wall clock time and date at job start Tue Mar 31 2020 03:54:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09005 * 109.45149 * 2 1 4 4 C 1.53038 * 109.45965 * 119.96537 * 2 1 3 5 5 C 1.53195 * 109.31213 * 181.38304 * 4 2 1 6 6 N 1.46920 * 108.89958 * 305.29700 * 5 4 2 7 7 C 1.34771 * 120.63454 * 233.68040 * 6 5 4 8 8 O 1.21507 * 119.99691 * 355.05538 * 7 6 5 9 9 C 1.48277 * 120.00320 * 175.06543 * 7 6 5 10 10 C 1.47497 * 128.71189 * 185.98647 * 9 7 6 11 11 N 1.30642 * 102.71175 * 179.90780 * 10 9 7 12 12 O 1.20835 * 109.62430 * 0.37351 * 11 10 9 13 13 N 1.20897 * 115.90821 * 359.73225 * 12 11 10 14 14 C 1.47213 * 118.55305 * 53.53463 * 6 5 4 15 15 C 1.53042 * 109.46149 * 240.03657 * 2 1 3 16 16 H 1.09007 * 109.49276 * 298.56510 * 15 2 1 17 17 C 1.53000 * 109.49891 * 58.62730 * 15 2 1 18 18 N 1.46495 * 109.47198 * 185.00113 * 17 15 2 19 19 C 1.36935 * 120.00253 * 180.02562 * 18 17 15 20 20 H 1.08001 * 119.99693 * 0.02562 * 19 18 17 21 21 C 1.38808 * 120.00342 * 180.02562 * 19 18 17 22 22 N 1.31618 * 119.99934 * 0.02562 * 21 19 18 23 23 Si 1.86804 * 119.99996 * 179.97438 * 21 19 18 24 24 H 1.48493 * 109.46870 * 60.00488 * 23 21 19 25 25 H 1.48501 * 109.46972 * 180.02562 * 23 21 19 26 26 H 1.48500 * 109.47028 * 299.99998 * 23 21 19 27 27 H 1.09004 * 109.47430 * 300.03180 * 1 2 3 28 28 H 1.08999 * 109.47487 * 60.03387 * 1 2 3 29 29 H 1.09001 * 109.47448 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.50058 * 61.43608 * 4 2 1 31 31 H 1.08994 * 109.49965 * 301.33594 * 4 2 1 32 32 H 1.09005 * 109.58398 * 65.15826 * 5 4 2 33 33 H 1.09002 * 109.58620 * 185.43597 * 5 4 2 34 34 H 1.07992 * 128.64187 * 0.03818 * 10 9 7 35 35 H 1.08992 * 109.53058 * 186.68192 * 14 6 5 36 36 H 1.08992 * 109.67318 * 66.36995 * 14 6 5 37 37 H 1.08999 * 109.47274 * 305.00569 * 17 15 2 38 38 H 1.09000 * 109.46510 * 65.00448 * 17 15 2 39 39 H 0.97008 * 120.00058 * 0.02562 * 18 17 15 40 40 H 0.97000 * 119.99860 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8929 1.0278 0.0000 4 6 2.0398 -0.7207 1.2501 5 6 3.5713 -0.6886 1.2642 6 7 4.0708 -1.2499 0.0016 7 6 4.9644 -2.2587 0.0045 8 8 5.4325 -2.6526 1.0543 9 6 5.3764 -2.8879 -1.2734 10 6 6.2359 -4.0676 -1.4858 11 7 6.2604 -4.1748 -2.7876 12 8 5.5989 -3.2916 -3.2800 13 7 5.0717 -2.5304 -2.5027 14 6 3.5714 -0.6885 -1.2643 15 6 2.0398 -0.7207 -1.2501 16 1 1.6977 -1.7556 -1.2383 17 6 1.5020 -0.0193 -2.4990 18 7 1.8910 -0.7776 -3.6906 19 6 1.5198 -0.3381 -4.9332 20 1 0.9406 0.5678 -5.0349 21 6 1.8879 -1.0568 -6.0623 22 7 2.5934 -2.1610 -5.9384 23 14 1.3809 -0.4576 -7.7574 24 1 1.9457 0.8953 -7.9935 25 1 1.8942 -1.3955 -8.7879 26 1 -0.1006 -0.3966 -7.8381 27 1 -0.3634 0.5143 0.8897 28 1 -0.3634 0.5133 -0.8903 29 1 -0.3634 -1.0277 0.0005 30 1 1.6978 -1.7557 1.2383 31 1 1.6572 -0.2207 2.1398 32 1 3.9142 0.3410 1.3674 33 1 3.9416 -1.2825 2.0999 34 1 6.7220 -4.6893 -0.7486 35 1 3.9416 -1.2844 -2.0984 36 1 3.9142 0.3407 -1.3698 37 1 0.4150 0.0382 -2.4437 38 1 1.9167 0.9871 -2.5574 39 1 2.4116 -1.5910 -3.5993 40 1 2.8503 -2.6635 -6.7273 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001133181938.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:54:02 Heat of formation + Delta-G solvation = 102.479235 kcal Electronic energy + Delta-G solvation = -24712.882300 eV Core-core repulsion = 21147.892440 eV Total energy + Delta-G solvation = -3564.989860 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.148 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -46.69575 -40.33642 -38.13589 -34.95567 -34.75706 -34.33123 -33.61946 -31.91185 -29.91998 -28.44202 -26.02463 -25.57572 -24.12893 -23.19876 -22.89603 -21.31457 -20.30454 -19.50430 -18.75990 -18.00645 -17.47048 -16.92569 -16.20973 -15.37578 -14.88239 -14.79718 -14.41346 -14.11405 -13.98062 -13.71717 -13.35199 -13.02057 -12.83843 -12.66557 -12.56428 -12.06254 -11.74809 -11.64623 -11.47908 -11.20169 -11.00651 -10.87207 -10.75430 -10.65178 -10.64040 -10.42936 -10.26083 -10.01575 -9.92615 -9.57997 -8.85393 -8.70299 -6.87320 -5.70311 -2.99743 0.89275 1.46233 2.53754 2.92359 3.46914 3.47755 3.51695 3.52631 3.59750 3.94216 4.52246 4.61527 4.79080 4.83375 4.86573 4.94312 5.07961 5.27657 5.37919 5.47877 5.51522 5.61183 5.65676 5.67508 5.81994 5.88048 5.93850 5.98290 6.15341 6.21367 6.26228 6.36714 6.42114 6.58237 6.76826 6.84564 7.18318 7.73951 7.83404 8.47329 8.63542 9.58778 10.15312 10.50381 11.51562 Molecular weight = 294.15amu Principal moments of inertia in cm(-1) A = 0.012216 B = 0.006468 C = 0.004359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2291.530369 B = 4328.278658 C = 6422.418402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.086 4.086 3 H 0.072 0.928 4 C -0.128 4.128 5 C 0.112 3.888 6 N -0.591 5.591 7 C 0.609 3.391 8 O -0.530 6.530 9 C -0.058 4.058 10 C 0.028 3.972 11 N -0.354 5.354 12 O 0.360 5.640 13 N -0.289 5.289 14 C 0.082 3.918 15 C -0.100 4.100 16 H 0.073 0.927 17 C 0.158 3.842 18 N -0.732 5.732 19 C -0.244 4.244 20 H 0.068 0.932 21 C -0.009 4.009 22 N -0.925 5.925 23 Si 0.904 3.096 24 H -0.287 1.287 25 H -0.291 1.291 26 H -0.288 1.288 27 H 0.050 0.950 28 H 0.066 0.934 29 H 0.053 0.947 30 H 0.067 0.933 31 H 0.077 0.923 32 H 0.072 0.928 33 H 0.092 0.908 34 H 0.223 0.777 35 H 0.133 0.867 36 H 0.073 0.927 37 H 0.029 0.971 38 H 0.019 0.981 39 H 0.385 0.615 40 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.092 0.984 14.913 15.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.106 4.106 3 H 0.091 0.909 4 C -0.166 4.166 5 C -0.009 4.009 6 N -0.322 5.322 7 C 0.394 3.606 8 O -0.406 6.406 9 C -0.223 4.223 10 C -0.158 4.158 11 N -0.076 5.076 12 O 0.131 5.869 13 N -0.008 5.008 14 C -0.039 4.039 15 C -0.120 4.120 16 H 0.091 0.909 17 C 0.030 3.970 18 N -0.377 5.377 19 C -0.375 4.375 20 H 0.086 0.914 21 C -0.205 4.205 22 N -0.573 5.573 23 Si 0.735 3.265 24 H -0.214 1.214 25 H -0.217 1.217 26 H -0.215 1.215 27 H 0.069 0.931 28 H 0.085 0.915 29 H 0.072 0.928 30 H 0.086 0.914 31 H 0.095 0.905 32 H 0.090 0.910 33 H 0.111 0.889 34 H 0.240 0.760 35 H 0.150 0.850 36 H 0.092 0.908 37 H 0.046 0.954 38 H 0.037 0.963 39 H 0.219 0.781 40 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 3.124 1.020 14.185 14.560 hybrid contribution -0.075 -0.053 -0.097 0.133 sum 3.049 0.968 14.088 14.446 Atomic orbital electron populations 1.21878 0.94794 1.02005 1.01807 1.21127 0.96152 0.99437 0.93835 0.90923 1.21998 0.94343 1.01709 0.98577 1.21706 0.94315 0.99157 0.85770 1.48112 1.41433 1.33559 1.09140 1.16576 0.79494 0.79440 0.85113 1.90782 1.55514 1.63565 1.30693 1.26231 1.03179 0.99130 0.93722 1.27614 0.98792 0.96875 0.92533 1.75080 1.11940 1.09871 1.10723 1.85266 1.42615 1.25503 1.33497 1.75441 1.11906 1.12885 1.00536 1.22784 0.95009 1.00763 0.85389 1.21701 0.93912 1.00818 0.95558 0.90907 1.20727 0.96958 0.94094 0.85241 1.42377 1.65464 1.29114 1.00729 1.19121 1.28250 1.06392 0.83756 0.91405 1.24707 1.00753 0.97500 0.97583 1.69640 1.42156 1.16955 1.28577 0.86331 0.77944 0.77667 0.84565 1.21369 1.21697 1.21459 0.93128 0.91544 0.92771 0.91429 0.90487 0.90980 0.88917 0.76044 0.85007 0.90827 0.95384 0.96304 0.78073 0.93439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.70 8.82 37.15 0.33 -1.37 16 2 C -0.09 -1.05 2.23 -90.58 -0.20 -1.25 16 3 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 4 C -0.13 -1.34 5.36 -26.61 -0.14 -1.49 16 5 C 0.11 1.28 6.41 -3.71 -0.02 1.25 16 6 N -0.59 -8.38 2.98 -173.49 -0.52 -8.90 16 7 C 0.61 9.32 7.72 -12.13 -0.09 9.23 16 8 O -0.53 -8.64 16.48 5.36 0.09 -8.55 16 9 C -0.06 -0.89 7.27 -80.06 -0.58 -1.47 16 10 C 0.03 0.36 12.63 -14.29 -0.18 0.18 16 11 N -0.35 -5.37 12.22 30.71 0.38 -4.99 16 12 O 0.36 6.28 11.65 27.27 0.32 6.60 16 13 N -0.29 -5.05 8.88 33.49 0.30 -4.75 16 14 C 0.08 1.30 5.44 -3.55 -0.02 1.28 16 15 C -0.10 -1.57 1.92 -90.50 -0.17 -1.75 16 16 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 17 C 0.16 3.04 5.41 -4.04 -0.02 3.02 16 18 N -0.73 -17.98 5.38 -59.91 -0.32 -18.31 16 19 C -0.24 -6.70 9.99 -15.06 -0.15 -6.85 16 20 H 0.07 1.81 7.83 -52.49 -0.41 1.40 16 21 C -0.01 -0.25 5.50 -17.43 -0.10 -0.34 16 22 N -0.93 -27.23 13.06 55.49 0.72 -26.50 16 23 Si 0.90 22.20 29.55 -169.99 -5.02 17.17 16 24 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 25 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 26 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 27 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.07 0.83 6.29 -51.93 -0.33 0.51 16 29 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.09 1.06 7.03 -51.93 -0.37 0.69 16 34 H 0.22 1.97 8.06 -52.49 -0.42 1.55 16 35 H 0.13 2.40 3.11 -64.43 -0.20 2.20 16 36 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 37 H 0.03 0.55 6.14 -51.93 -0.32 0.23 16 38 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 39 H 0.39 9.92 6.90 -40.82 -0.28 9.63 16 40 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 LS Contribution 327.16 15.07 4.93 4.93 Total: -1.00 -30.78 327.16 -5.75 -36.53 By element: Atomic # 1 Polarization: 11.59 SS G_CDS: -5.27 Total: 6.32 kcal Atomic # 6 Polarization: 1.80 SS G_CDS: -1.36 Total: 0.45 kcal Atomic # 7 Polarization: -64.01 SS G_CDS: 0.56 Total: -63.45 kcal Atomic # 8 Polarization: -2.36 SS G_CDS: 0.41 Total: -1.95 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.02 Total: 17.17 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -30.78 -5.75 -36.53 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133181938.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.012 kcal (2) G-P(sol) polarization free energy of solvation -30.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 108.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.533 kcal (6) G-S(sol) free energy of system = (1) + (5) 102.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds