Wall clock time and date at job start Tue Mar 31 2020 03:54:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08997 * 109.46144 * 2 1 4 4 C 1.53072 * 109.33321 * 240.11005 * 2 1 3 5 5 C 1.53195 * 109.29604 * 301.13667 * 4 2 1 6 6 N 1.46928 * 108.89245 * 305.57928 * 5 4 2 7 7 C 1.34780 * 120.62763 * 233.51422 * 6 5 4 8 8 O 1.21500 * 119.99713 * 173.59473 * 7 6 5 9 9 C 1.48269 * 119.99929 * 353.59455 * 7 6 5 10 10 C 1.47498 * 128.71122 * 173.36557 * 9 7 6 11 11 N 1.30639 * 102.71799 * 179.97438 * 10 9 7 12 12 O 1.20844 * 109.62047 * 0.02562 * 11 10 9 13 13 N 1.20903 * 115.90581 * 359.73437 * 12 11 10 14 14 C 1.46924 * 118.73879 * 53.54126 * 6 5 4 15 15 C 1.53040 * 109.45739 * 119.97233 * 2 1 3 16 16 H 1.08998 * 109.50017 * 178.59042 * 15 2 1 17 17 C 1.53000 * 109.50039 * 298.68834 * 15 2 1 18 18 N 1.46499 * 109.47305 * 184.83847 * 17 15 2 19 19 C 1.36935 * 120.00332 * 179.97438 * 18 17 15 20 20 H 1.08008 * 119.99322 * 0.02562 * 19 18 17 21 21 C 1.38807 * 120.00429 * 179.97438 * 19 18 17 22 22 N 1.31621 * 120.00014 * 180.02562 * 21 19 18 23 23 Si 1.86805 * 119.99877 * 0.02562 * 21 19 18 24 24 H 1.48490 * 109.47364 * 89.99661 * 23 21 19 25 25 H 1.48498 * 109.46956 * 209.99823 * 23 21 19 26 26 H 1.48504 * 109.46936 * 329.99218 * 23 21 19 27 27 H 1.09007 * 109.46661 * 300.02989 * 1 2 3 28 28 H 1.08998 * 109.47007 * 60.02673 * 1 2 3 29 29 H 1.08997 * 109.47125 * 180.02562 * 1 2 3 30 30 H 1.08992 * 109.38724 * 181.26143 * 4 2 1 31 31 H 1.09000 * 109.62226 * 61.15427 * 4 2 1 32 32 H 1.08997 * 109.58632 * 185.72249 * 5 4 2 33 33 H 1.09004 * 109.58252 * 65.43747 * 5 4 2 34 34 H 1.08000 * 128.63735 * 359.94023 * 10 9 7 35 35 H 1.08995 * 109.58845 * 66.17755 * 14 6 5 36 36 H 1.08998 * 109.58460 * 186.60525 * 14 6 5 37 37 H 1.09002 * 109.46830 * 304.83857 * 17 15 2 38 38 H 1.09004 * 109.47238 * 64.84052 * 17 15 2 39 39 H 0.97001 * 120.00271 * 0.02562 * 18 17 15 40 40 H 0.97000 * 119.99555 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0368 -0.7198 -1.2523 5 6 1.4990 -2.1542 -1.2643 6 7 1.8619 -2.8090 -0.0001 7 6 2.5148 -3.9881 -0.0002 8 8 2.9120 -4.4626 1.0454 9 6 2.7481 -4.7061 -1.2763 10 6 3.5444 -5.9241 -1.5172 11 7 3.4048 -6.1094 -2.8028 12 8 2.7045 -5.2395 -3.2645 13 7 2.2929 -4.4193 -2.4773 14 6 1.4992 -2.1542 1.2642 15 6 2.0399 -0.7209 1.2500 16 1 3.1296 -0.7432 1.2382 17 6 1.5572 0.0193 2.4990 18 7 2.1396 -0.6025 3.6908 19 6 1.8487 -0.1063 4.9335 20 1 1.1896 0.7433 5.0350 21 6 2.4001 -0.6958 6.0628 22 7 2.1201 -0.2191 7.2573 23 14 3.5396 -2.1656 5.8872 24 1 4.9408 -1.6926 5.7542 25 1 3.4210 -3.0301 7.0888 26 1 3.1625 -2.9427 4.6792 27 1 -0.3633 0.5143 0.8898 28 1 -0.3633 0.5134 -0.8902 29 1 -0.3633 -1.0276 0.0005 30 1 3.1265 -0.7400 -1.2420 31 1 1.6906 -0.1940 -2.1421 32 1 1.9374 -2.7018 -2.0985 33 1 0.4140 -2.1366 -1.3684 34 1 4.1041 -6.5152 -0.8074 35 1 0.4143 -2.1346 1.3674 36 1 1.9378 -2.7019 2.0983 37 1 1.8672 1.0629 2.4454 38 1 0.4700 -0.0343 2.5558 39 1 2.7319 -1.3653 3.5997 40 1 2.5057 -0.6309 8.0464 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001133181940.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:54:09 Heat of formation + Delta-G solvation = 106.858767 kcal Electronic energy + Delta-G solvation = -24324.125261 eV Core-core repulsion = 20759.325311 eV Total energy + Delta-G solvation = -3564.799950 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.148 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -47.26423 -40.63549 -38.39077 -35.59131 -34.94969 -34.72838 -33.64613 -31.98940 -30.34516 -28.07370 -27.04534 -25.38124 -24.94265 -23.92901 -22.97665 -21.21313 -20.76210 -19.40216 -18.89477 -18.34359 -17.63962 -17.31426 -16.29973 -15.53793 -15.34402 -15.13341 -15.05208 -14.34198 -14.00423 -13.76948 -13.60155 -13.29305 -13.13638 -12.76449 -12.70512 -12.50018 -11.90589 -11.75537 -11.58409 -11.56371 -11.27165 -11.14366 -11.06057 -10.85583 -10.75383 -10.56218 -10.34829 -10.19487 -9.99369 -9.56007 -8.90169 -8.77674 -7.22401 -5.75576 -3.11513 0.39260 0.98390 2.28371 2.66447 3.06784 3.13427 3.42289 3.48676 3.50478 3.54642 4.21237 4.41203 4.61916 4.62464 4.71829 4.74410 4.97166 5.00631 5.11661 5.33103 5.37736 5.51012 5.53173 5.59397 5.62429 5.69971 5.75251 5.81670 5.91540 6.12651 6.16579 6.20187 6.29325 6.36425 6.61608 6.72423 7.03881 7.68338 7.99692 8.06270 8.43233 9.22076 9.94821 10.13682 11.42619 Molecular weight = 294.15amu Principal moments of inertia in cm(-1) A = 0.017973 B = 0.004658 C = 0.003803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1557.495743 B = 6009.761325 C = 7361.386673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.085 4.085 3 H 0.078 0.922 4 C -0.127 4.127 5 C 0.086 3.914 6 N -0.589 5.589 7 C 0.596 3.404 8 O -0.508 6.508 9 C -0.030 4.030 10 C 0.037 3.963 11 N -0.353 5.353 12 O 0.334 5.666 13 N -0.321 5.321 14 C 0.117 3.883 15 C -0.107 4.107 16 H 0.075 0.925 17 C 0.165 3.835 18 N -0.757 5.757 19 C -0.246 4.246 20 H 0.090 0.910 21 C 0.007 3.993 22 N -0.934 5.934 23 Si 0.879 3.121 24 H -0.284 1.284 25 H -0.290 1.290 26 H -0.272 1.272 27 H 0.066 0.934 28 H 0.052 0.948 29 H 0.056 0.944 30 H 0.065 0.935 31 H 0.078 0.922 32 H 0.106 0.894 33 H 0.077 0.923 34 H 0.228 0.772 35 H 0.080 0.920 36 H 0.101 0.899 37 H 0.032 0.968 38 H 0.033 0.967 39 H 0.361 0.639 40 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.668 -6.537 -23.904 24.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.104 4.104 3 H 0.096 0.904 4 C -0.165 4.165 5 C -0.037 4.037 6 N -0.321 5.321 7 C 0.380 3.620 8 O -0.381 6.381 9 C -0.195 4.195 10 C -0.149 4.149 11 N -0.076 5.076 12 O 0.111 5.889 13 N -0.045 5.045 14 C -0.003 4.003 15 C -0.126 4.126 16 H 0.093 0.907 17 C 0.037 3.963 18 N -0.403 5.403 19 C -0.375 4.375 20 H 0.108 0.892 21 C -0.189 4.189 22 N -0.582 5.582 23 Si 0.709 3.291 24 H -0.211 1.211 25 H -0.217 1.217 26 H -0.198 1.198 27 H 0.085 0.915 28 H 0.071 0.929 29 H 0.075 0.925 30 H 0.084 0.916 31 H 0.097 0.903 32 H 0.124 0.876 33 H 0.095 0.905 34 H 0.244 0.756 35 H 0.098 0.902 36 H 0.119 0.881 37 H 0.049 0.951 38 H 0.050 0.950 39 H 0.194 0.806 40 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -0.865 -6.583 -24.284 25.176 hybrid contribution 1.105 -1.081 0.957 1.818 sum 0.241 -7.664 -23.328 24.555 Atomic orbital electron populations 1.22008 0.94962 1.02012 1.02176 1.21093 0.96263 0.99596 0.93481 0.90367 1.21947 1.01088 0.94763 0.98748 1.22367 1.01319 0.94238 0.85754 1.48025 1.55414 1.19573 1.09118 1.16631 0.79237 0.81193 0.84955 1.90898 1.49858 1.66806 1.30571 1.26362 1.00922 0.98093 0.94127 1.27764 0.99579 0.95433 0.92106 1.75075 1.09868 1.10690 1.11934 1.85093 1.44944 1.24332 1.34575 1.75328 1.16371 1.11795 1.00961 1.21944 1.00709 0.93217 0.84479 1.21762 1.01005 0.94028 0.95825 0.90654 1.20665 0.96460 0.95018 0.84115 1.42779 1.57752 1.37210 1.02586 1.19033 1.24510 1.12155 0.81842 0.89199 1.24650 1.00155 0.98994 0.95097 1.69704 1.48299 1.43150 0.97034 0.86623 0.81513 0.83714 0.77247 1.21115 1.21671 1.19818 0.91506 0.92857 0.92528 0.91630 0.90326 0.87637 0.90457 0.75586 0.90176 0.88118 0.95054 0.94971 0.80552 0.93061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.57 8.11 37.16 0.30 -1.27 16 2 C -0.09 -0.94 2.71 -90.56 -0.25 -1.18 16 3 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 4 C -0.13 -1.19 5.63 -26.59 -0.15 -1.34 16 5 C 0.09 0.85 5.69 -3.71 -0.02 0.83 16 6 N -0.59 -7.59 2.97 -173.72 -0.52 -8.11 16 7 C 0.60 8.30 7.71 -12.13 -0.09 8.20 16 8 O -0.51 -8.84 16.47 5.37 0.09 -8.75 16 9 C -0.03 -0.33 7.18 -80.07 -0.58 -0.90 16 10 C 0.04 0.33 12.63 -14.29 -0.18 0.15 16 11 N -0.35 -3.28 12.22 30.72 0.38 -2.91 16 12 O 0.33 3.05 11.65 27.26 0.32 3.37 16 13 N -0.32 -3.14 9.03 33.49 0.30 -2.84 16 14 C 0.12 1.75 5.06 -3.71 -0.02 1.73 16 15 C -0.11 -1.55 2.16 -90.50 -0.20 -1.75 16 16 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 17 C 0.17 3.03 5.19 -4.04 -0.02 3.01 16 18 N -0.76 -17.90 5.18 -59.91 -0.31 -18.21 16 19 C -0.25 -6.97 10.47 -15.06 -0.16 -7.13 16 20 H 0.09 2.71 8.06 -52.48 -0.42 2.29 16 21 C 0.01 0.21 5.50 -17.43 -0.10 0.11 16 22 N -0.93 -29.61 13.97 55.49 0.78 -28.84 16 23 Si 0.88 22.74 27.74 -169.99 -4.71 18.03 16 24 H -0.28 -7.32 7.11 56.52 0.40 -6.92 16 25 H -0.29 -7.59 7.11 56.52 0.40 -7.19 16 26 H -0.27 -6.79 6.52 56.52 0.37 -6.42 16 27 H 0.07 0.75 6.57 -51.93 -0.34 0.41 16 28 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.06 0.58 4.98 -51.93 -0.26 0.32 16 30 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.11 1.00 4.26 -52.63 -0.22 0.77 16 33 H 0.08 0.70 6.70 -51.93 -0.35 0.35 16 34 H 0.23 1.43 8.06 -52.49 -0.42 1.00 16 35 H 0.08 1.14 6.69 -51.93 -0.35 0.79 16 36 H 0.10 1.84 6.20 -51.93 -0.32 1.52 16 37 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.03 0.59 6.73 -51.93 -0.35 0.24 16 39 H 0.36 8.56 4.75 -40.82 -0.19 8.36 16 40 H 0.26 7.84 8.31 -40.82 -0.34 7.50 16 LS Contribution 318.17 15.07 4.79 4.79 Total: -1.00 -32.93 318.17 -5.28 -38.21 By element: Atomic # 1 Polarization: 9.73 SS G_CDS: -4.94 Total: 4.80 kcal Atomic # 6 Polarization: 1.91 SS G_CDS: -1.45 Total: 0.46 kcal Atomic # 7 Polarization: -61.53 SS G_CDS: 0.63 Total: -60.91 kcal Atomic # 8 Polarization: -5.79 SS G_CDS: 0.41 Total: -5.38 kcal Atomic # 14 Polarization: 22.74 SS G_CDS: -4.71 Total: 18.03 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -32.93 -5.28 -38.21 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133181940.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.064 kcal (2) G-P(sol) polarization free energy of solvation -32.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 112.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.205 kcal (6) G-S(sol) free energy of system = (1) + (5) 106.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds