Wall clock time and date at job start Tue Mar 31 2020 03:54:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08997 * 109.46144 * 2 1 4 4 C 1.53072 * 109.33321 * 240.11005 * 2 1 3 5 5 C 1.53195 * 109.29604 * 301.13667 * 4 2 1 6 6 N 1.46928 * 108.89245 * 305.57928 * 5 4 2 7 7 C 1.34780 * 120.62763 * 233.51422 * 6 5 4 8 8 O 1.21500 * 119.99713 * 173.59473 * 7 6 5 9 9 C 1.48269 * 119.99929 * 353.59455 * 7 6 5 10 10 C 1.47498 * 128.71122 * 173.36557 * 9 7 6 11 11 N 1.30639 * 102.71799 * 179.97438 * 10 9 7 12 12 O 1.20844 * 109.62047 * 0.02562 * 11 10 9 13 13 N 1.20903 * 115.90581 * 359.73437 * 12 11 10 14 14 C 1.46924 * 118.73879 * 53.54126 * 6 5 4 15 15 C 1.53040 * 109.45739 * 119.97233 * 2 1 3 16 16 H 1.08998 * 109.50017 * 178.59042 * 15 2 1 17 17 C 1.53000 * 109.50039 * 298.68834 * 15 2 1 18 18 N 1.46499 * 109.47305 * 184.83847 * 17 15 2 19 19 C 1.36935 * 120.00332 * 179.97438 * 18 17 15 20 20 H 1.08008 * 119.99322 * 0.02562 * 19 18 17 21 21 C 1.38807 * 120.00429 * 179.97438 * 19 18 17 22 22 N 1.31621 * 120.00014 * 180.02562 * 21 19 18 23 23 Si 1.86805 * 119.99877 * 0.02562 * 21 19 18 24 24 H 1.48490 * 109.47364 * 89.99661 * 23 21 19 25 25 H 1.48498 * 109.46956 * 209.99823 * 23 21 19 26 26 H 1.48504 * 109.46936 * 329.99218 * 23 21 19 27 27 H 1.09007 * 109.46661 * 300.02989 * 1 2 3 28 28 H 1.08998 * 109.47007 * 60.02673 * 1 2 3 29 29 H 1.08997 * 109.47125 * 180.02562 * 1 2 3 30 30 H 1.08992 * 109.38724 * 181.26143 * 4 2 1 31 31 H 1.09000 * 109.62226 * 61.15427 * 4 2 1 32 32 H 1.08997 * 109.58632 * 185.72249 * 5 4 2 33 33 H 1.09004 * 109.58252 * 65.43747 * 5 4 2 34 34 H 1.08000 * 128.63735 * 359.94023 * 10 9 7 35 35 H 1.08995 * 109.58845 * 66.17755 * 14 6 5 36 36 H 1.08998 * 109.58460 * 186.60525 * 14 6 5 37 37 H 1.09002 * 109.46830 * 304.83857 * 17 15 2 38 38 H 1.09004 * 109.47238 * 64.84052 * 17 15 2 39 39 H 0.97001 * 120.00271 * 0.02562 * 18 17 15 40 40 H 0.97000 * 119.99555 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0368 -0.7198 -1.2523 5 6 1.4990 -2.1542 -1.2643 6 7 1.8619 -2.8090 -0.0001 7 6 2.5148 -3.9881 -0.0002 8 8 2.9120 -4.4626 1.0454 9 6 2.7481 -4.7061 -1.2763 10 6 3.5444 -5.9241 -1.5172 11 7 3.4048 -6.1094 -2.8028 12 8 2.7045 -5.2395 -3.2645 13 7 2.2929 -4.4193 -2.4773 14 6 1.4992 -2.1542 1.2642 15 6 2.0399 -0.7209 1.2500 16 1 3.1296 -0.7432 1.2382 17 6 1.5572 0.0193 2.4990 18 7 2.1396 -0.6025 3.6908 19 6 1.8487 -0.1063 4.9335 20 1 1.1896 0.7433 5.0350 21 6 2.4001 -0.6958 6.0628 22 7 2.1201 -0.2191 7.2573 23 14 3.5396 -2.1656 5.8872 24 1 4.9408 -1.6926 5.7542 25 1 3.4210 -3.0301 7.0888 26 1 3.1625 -2.9427 4.6792 27 1 -0.3633 0.5143 0.8898 28 1 -0.3633 0.5134 -0.8902 29 1 -0.3633 -1.0276 0.0005 30 1 3.1265 -0.7400 -1.2420 31 1 1.6906 -0.1940 -2.1421 32 1 1.9374 -2.7018 -2.0985 33 1 0.4140 -2.1366 -1.3684 34 1 4.1041 -6.5152 -0.8074 35 1 0.4143 -2.1346 1.3674 36 1 1.9378 -2.7019 2.0983 37 1 1.8672 1.0629 2.4454 38 1 0.4700 -0.0343 2.5558 39 1 2.7319 -1.3653 3.5997 40 1 2.5057 -0.6309 8.0464 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001133181940.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:54:09 Heat of formation + Delta-G solvation = 84.276030 kcal Electronic energy + Delta-G solvation = -24325.104522 eV Core-core repulsion = 20759.325311 eV Total energy + Delta-G solvation = -3565.779211 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.148 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -48.03128 -41.68579 -39.50311 -36.94330 -36.00586 -35.63475 -34.79631 -33.71425 -31.93285 -28.99102 -28.30210 -26.61779 -25.79566 -24.79327 -24.60650 -22.62714 -21.80618 -20.16893 -20.12773 -19.40330 -19.07767 -18.42914 -17.39980 -16.81620 -16.55588 -16.28157 -16.03571 -15.84975 -15.36738 -15.06509 -14.70554 -14.64470 -14.35359 -13.98162 -13.93443 -13.55715 -13.40877 -12.99500 -12.77058 -12.59236 -12.50074 -12.37856 -12.24714 -12.02486 -11.91763 -11.87404 -11.76301 -11.67729 -11.35850 -11.16287 -10.99552 -9.83227 -9.30784 -8.05750 -5.37956 -0.45423 0.25672 1.31675 1.34838 1.37340 1.43907 1.65948 2.22370 2.40860 2.44300 2.75344 3.26456 3.33358 3.50577 3.63867 3.74210 3.77600 3.94112 4.00747 4.21119 4.31442 4.38806 4.46735 4.51144 4.66373 4.71383 4.74660 4.86349 4.96251 5.05520 5.10088 5.19376 5.24017 5.30723 5.37579 5.56757 5.74315 6.02702 6.18999 6.64389 7.05284 7.30497 7.82399 7.98885 9.15822 Molecular weight = 294.15amu Principal moments of inertia in cm(-1) A = 0.017973 B = 0.004658 C = 0.003803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1557.495743 B = 6009.761325 C = 7361.386673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.080 4.080 3 H 0.085 0.915 4 C -0.120 4.120 5 C 0.083 3.917 6 N -0.586 5.586 7 C 0.594 3.406 8 O -0.552 6.552 9 C -0.047 4.047 10 C 0.049 3.951 11 N -0.356 5.356 12 O 0.347 5.653 13 N -0.312 5.312 14 C 0.122 3.878 15 C -0.095 4.095 16 H 0.063 0.937 17 C 0.162 3.838 18 N -0.762 5.762 19 C -0.231 4.231 20 H 0.063 0.937 21 C -0.056 4.056 22 N -0.981 5.981 23 Si 0.944 3.056 24 H -0.279 1.279 25 H -0.293 1.293 26 H -0.261 1.261 27 H 0.051 0.949 28 H 0.078 0.922 29 H 0.056 0.944 30 H 0.060 0.940 31 H 0.111 0.889 32 H 0.114 0.886 33 H 0.093 0.907 34 H 0.250 0.750 35 H 0.087 0.913 36 H 0.064 0.936 37 H 0.032 0.968 38 H 0.037 0.963 39 H 0.362 0.638 40 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.527 -7.167 -27.177 28.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.099 4.099 3 H 0.103 0.897 4 C -0.158 4.158 5 C -0.038 4.038 6 N -0.318 5.318 7 C 0.379 3.621 8 O -0.429 6.429 9 C -0.211 4.211 10 C -0.137 4.137 11 N -0.079 5.079 12 O 0.120 5.880 13 N -0.032 5.032 14 C 0.000 4.000 15 C -0.115 4.115 16 H 0.082 0.918 17 C 0.036 3.964 18 N -0.407 5.407 19 C -0.362 4.362 20 H 0.081 0.919 21 C -0.248 4.248 22 N -0.632 5.632 23 Si 0.772 3.228 24 H -0.205 1.205 25 H -0.220 1.220 26 H -0.186 1.186 27 H 0.070 0.930 28 H 0.097 0.903 29 H 0.075 0.925 30 H 0.079 0.921 31 H 0.129 0.871 32 H 0.132 0.868 33 H 0.111 0.889 34 H 0.266 0.734 35 H 0.105 0.895 36 H 0.082 0.918 37 H 0.050 0.950 38 H 0.055 0.945 39 H 0.195 0.805 40 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -0.748 -7.177 -27.629 28.556 hybrid contribution 0.983 -0.812 1.875 2.267 sum 0.235 -7.989 -25.754 26.966 Atomic orbital electron populations 1.21988 0.94035 1.02164 1.02723 1.21080 0.96946 0.99616 0.92257 0.89672 1.21937 1.00800 0.94207 0.98868 1.22611 1.02388 0.94464 0.84330 1.48081 1.54880 1.19408 1.09424 1.16920 0.78541 0.81217 0.85398 1.90869 1.51745 1.67915 1.32356 1.25960 1.02666 0.99100 0.93369 1.28137 0.98704 0.94601 0.92231 1.75114 1.10121 1.10721 1.11988 1.85095 1.44565 1.24082 1.34217 1.75292 1.15730 1.11707 1.00515 1.21696 1.00731 0.92947 0.84592 1.21630 1.00218 0.93884 0.95778 0.91822 1.20858 0.96466 0.95157 0.83921 1.42853 1.57949 1.37326 1.02602 1.19066 1.22632 1.10685 0.83792 0.91869 1.25360 1.02473 1.02154 0.94839 1.69857 1.50332 1.45103 0.97868 0.85578 0.79580 0.80394 0.77273 1.20516 1.21971 1.18648 0.93040 0.90287 0.92546 0.92115 0.87122 0.86831 0.88936 0.73404 0.89506 0.91756 0.95016 0.94473 0.80488 0.93300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.65 8.11 71.98 0.58 -2.07 16 2 C -0.08 -1.55 2.71 -10.75 -0.03 -1.58 16 3 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 4 C -0.12 -1.81 5.63 30.68 0.17 -1.64 16 5 C 0.08 1.40 5.69 86.36 0.49 1.89 16 6 N -0.59 -14.30 2.97 -821.82 -2.44 -16.74 16 7 C 0.59 16.02 7.71 86.91 0.67 16.69 16 8 O -0.55 -19.28 16.47 -3.72 -0.06 -19.34 16 9 C -0.05 -0.95 7.18 44.29 0.32 -0.63 16 10 C 0.05 0.77 12.63 87.31 1.10 1.87 16 11 N -0.36 -5.74 12.22 -61.42 -0.75 -6.50 16 12 O 0.35 5.42 11.65 140.84 1.64 7.06 16 13 N -0.31 -5.30 9.03 -52.04 -0.47 -5.77 16 14 C 0.12 3.58 5.06 86.37 0.44 4.01 16 15 C -0.10 -2.68 2.16 -10.71 -0.02 -2.71 16 16 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 17 C 0.16 5.90 5.19 86.38 0.45 6.35 16 18 N -0.76 -36.21 5.18 -343.45 -1.78 -37.99 16 19 C -0.23 -13.35 10.47 84.03 0.88 -12.47 16 20 H 0.06 3.94 8.06 -2.91 -0.02 3.91 16 21 C -0.06 -3.41 5.50 84.86 0.47 -2.94 16 22 N -0.98 -63.80 13.97 21.65 0.30 -63.50 16 23 Si 0.94 47.90 27.74 68.60 1.90 49.80 16 24 H -0.28 -13.81 7.11 99.48 0.71 -13.10 16 25 H -0.29 -14.93 7.11 99.48 0.71 -14.22 16 26 H -0.26 -12.65 6.52 99.48 0.65 -12.00 16 27 H 0.05 1.06 6.57 -2.38 -0.02 1.05 16 28 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 29 H 0.06 0.99 4.98 -2.39 -0.01 0.98 16 30 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 31 H 0.11 1.07 8.14 -2.39 -0.02 1.05 16 32 H 0.11 1.78 4.26 -3.68 -0.02 1.76 16 33 H 0.09 1.33 6.70 -2.38 -0.02 1.31 16 34 H 0.25 2.58 8.06 -2.91 -0.02 2.55 16 35 H 0.09 2.39 6.69 -2.39 -0.02 2.38 16 36 H 0.06 2.38 6.20 -2.39 -0.01 2.37 16 37 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 38 H 0.04 1.34 6.73 -2.38 -0.02 1.33 16 39 H 0.36 17.15 4.75 -92.71 -0.44 16.71 16 40 H 0.26 16.02 8.31 -92.71 -0.77 15.25 16 Total: -1.00 -72.70 318.17 4.44 -68.26 By element: Atomic # 1 Polarization: 17.36 SS G_CDS: 0.58 Total: 17.94 kcal Atomic # 6 Polarization: 1.27 SS G_CDS: 5.52 Total: 6.79 kcal Atomic # 7 Polarization: -125.36 SS G_CDS: -5.14 Total: -130.51 kcal Atomic # 8 Polarization: -13.86 SS G_CDS: 1.58 Total: -12.28 kcal Atomic # 14 Polarization: 47.90 SS G_CDS: 1.90 Total: 49.80 kcal Total: -72.70 4.44 -68.26 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133181940.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.532 kcal (2) G-P(sol) polarization free energy of solvation -72.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.255 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds