Wall clock time and date at job start Tue Mar 31 2020 03:58:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08999 * 109.46769 * 2 1 4 4 C 1.52997 * 109.46997 * 119.99887 * 2 1 3 5 5 C 1.53000 * 109.47116 * 184.99938 * 4 2 1 6 6 H 1.08996 * 109.46950 * 304.99887 * 5 4 2 7 7 C 1.52998 * 109.47281 * 184.99929 * 5 4 2 8 8 N 1.46507 * 109.47056 * 65.00039 * 5 4 2 9 9 C 1.34772 * 119.99638 * 205.00165 * 8 5 4 10 10 O 1.21588 * 120.00511 * 359.97438 * 9 8 5 11 11 C 1.47528 * 119.99666 * 179.97438 * 9 8 5 12 12 C 1.39805 * 120.98209 * 359.97438 * 11 9 8 13 13 N 1.32187 * 118.98244 * 179.74805 * 12 11 9 14 14 C 1.31942 * 121.13823 * 0.25086 * 13 12 11 15 15 N 1.31725 * 122.20025 * 0.02562 * 14 13 12 16 16 C 1.32772 * 120.86602 * 359.97438 * 15 14 13 17 17 O 1.35288 * 120.61133 * 180.02562 * 16 15 14 18 18 N 1.46497 * 109.46907 * 239.99952 * 2 1 3 19 19 C 1.36934 * 120.00295 * 85.00326 * 18 2 1 20 20 H 1.08000 * 119.99821 * 359.97438 * 19 18 2 21 21 C 1.38812 * 120.00158 * 180.02562 * 19 18 2 22 22 N 1.31614 * 119.99965 * 179.97438 * 21 19 18 23 23 Si 1.86799 * 119.99882 * 359.97438 * 21 19 18 24 24 H 1.48503 * 109.47139 * 90.00491 * 23 21 19 25 25 H 1.48499 * 109.47234 * 210.00079 * 23 21 19 26 26 H 1.48496 * 109.47430 * 330.00182 * 23 21 19 27 27 H 1.08999 * 109.46748 * 300.00622 * 1 2 3 28 28 H 1.08999 * 109.47120 * 60.00283 * 1 2 3 29 29 H 1.08991 * 109.47035 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47315 * 64.99602 * 4 2 1 31 31 H 1.09004 * 109.47257 * 304.99683 * 4 2 1 32 32 H 1.08998 * 109.47113 * 59.99459 * 7 5 4 33 33 H 1.08995 * 109.47370 * 180.02562 * 7 5 4 34 34 H 1.09001 * 109.47049 * 300.00348 * 7 5 4 35 35 H 0.96998 * 119.99900 * 25.00061 * 8 5 4 36 36 H 1.08002 * 120.51122 * 0.02891 * 12 11 9 37 37 H 1.08007 * 118.89713 * 179.97438 * 14 13 12 38 38 H 0.96697 * 114.00198 * 89.99984 * 17 16 15 39 39 H 0.97006 * 119.99827 * 264.99918 * 18 2 1 40 40 H 0.97010 * 120.00109 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5649 -0.6133 1.3137 6 1 3.9954 -0.9923 0.3869 7 6 4.0852 -1.4382 2.4925 8 7 3.9480 0.7895 1.4924 9 6 5.1612 1.2135 1.0867 10 8 5.9379 0.4319 0.5727 11 6 5.5468 2.6262 1.2661 12 6 4.6697 3.5425 1.8541 13 7 5.0579 4.7976 2.0001 14 6 6.2501 5.1943 1.5972 15 7 7.1101 4.3714 1.0330 16 6 6.8067 3.0925 0.8454 17 8 7.6941 2.2518 0.2658 18 7 2.0183 -0.6906 -1.1962 19 6 2.1492 -0.0076 -2.3757 20 1 1.8920 1.0403 -2.4243 21 6 2.6113 -0.6621 -3.5092 22 7 2.7366 -0.0057 -4.6431 23 14 3.0555 -2.4746 -3.4253 24 1 1.8580 -3.2929 -3.7442 25 1 4.1304 -2.7668 -4.4072 26 1 3.5310 -2.8050 -2.0579 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 1.7516 -1.7714 1.2057 31 1 1.6054 -0.2616 2.1370 32 1 3.8000 -2.4818 2.3596 33 1 5.1714 -1.3610 2.5387 34 1 3.6546 -1.0593 3.4194 35 1 3.3285 1.4129 1.9028 36 1 3.6917 3.2287 2.1880 37 1 6.5298 6.2285 1.7340 38 1 8.2856 1.8118 0.8916 39 1 2.2490 -1.6318 -1.1526 40 1 3.0599 -0.4630 -5.4352 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001134721571.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:58:52 Heat of formation + Delta-G solvation = -43.794380 kcal Electronic energy + Delta-G solvation = -24140.974522 eV Core-core repulsion = 20569.641762 eV Total energy + Delta-G solvation = -3571.332760 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.148 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.43783 -40.58885 -38.84653 -38.28296 -36.13517 -34.68476 -34.06488 -33.21404 -31.64206 -30.85183 -27.59660 -26.48626 -25.38491 -25.27162 -22.92891 -21.90367 -21.32722 -20.36757 -19.77069 -19.13234 -18.72727 -17.58738 -17.14185 -16.60754 -16.37633 -15.99041 -15.68763 -15.37363 -15.23527 -14.93990 -14.78578 -14.59158 -14.28617 -14.00160 -13.45093 -13.34103 -13.23938 -12.99608 -12.79592 -12.62376 -12.46842 -12.36901 -11.98420 -11.86692 -11.81814 -11.67728 -11.43739 -10.97739 -10.90718 -10.79280 -10.52414 -10.02704 -9.26676 -8.01914 -5.31819 -0.73307 -0.24029 1.32878 1.38385 1.43907 1.76689 2.03560 2.24488 2.47939 2.62780 2.99599 3.20830 3.31559 3.57432 3.66910 3.68689 3.86571 4.08773 4.21297 4.34100 4.40236 4.53803 4.67873 4.79314 4.85151 4.91787 5.02693 5.05655 5.10731 5.22295 5.35168 5.39070 5.57076 5.62605 5.63318 5.79670 6.23104 6.39925 6.50482 6.82209 7.11466 7.20581 7.90761 8.05590 9.20459 Molecular weight = 294.15amu Principal moments of inertia in cm(-1) A = 0.014015 B = 0.005154 C = 0.004693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1997.417890 B = 5431.194724 C = 5964.858562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.164 3.836 3 H 0.043 0.957 4 C -0.122 4.122 5 C 0.142 3.858 6 H 0.049 0.951 7 C -0.151 4.151 8 N -0.697 5.697 9 C 0.564 3.436 10 O -0.561 6.561 11 C -0.272 4.272 12 C 0.211 3.789 13 N -0.533 5.533 14 C 0.341 3.659 15 N -0.561 5.561 16 C 0.403 3.597 17 O -0.474 6.474 18 N -0.749 5.749 19 C -0.212 4.212 20 H 0.052 0.948 21 C -0.071 4.071 22 N -0.989 5.989 23 Si 0.950 3.050 24 H -0.274 1.274 25 H -0.305 1.305 26 H -0.254 1.254 27 H 0.081 0.919 28 H 0.023 0.977 29 H 0.051 0.949 30 H 0.088 0.912 31 H 0.116 0.884 32 H 0.073 0.927 33 H 0.039 0.961 34 H 0.085 0.915 35 H 0.412 0.588 36 H 0.209 0.791 37 H 0.244 0.756 38 H 0.426 0.574 39 H 0.362 0.638 40 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.250 4.723 23.792 24.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.057 3.943 3 H 0.061 0.939 4 C -0.160 4.160 5 C 0.038 3.962 6 H 0.068 0.932 7 C -0.209 4.209 8 N -0.349 5.349 9 C 0.350 3.650 10 O -0.439 6.439 11 C -0.282 4.282 12 C 0.044 3.956 13 N -0.248 5.248 14 C 0.055 3.945 15 N -0.287 5.287 16 C 0.216 3.784 17 O -0.284 6.284 18 N -0.392 5.392 19 C -0.344 4.344 20 H 0.070 0.930 21 C -0.261 4.261 22 N -0.641 5.641 23 Si 0.778 3.222 24 H -0.200 1.200 25 H -0.233 1.233 26 H -0.178 1.178 27 H 0.100 0.900 28 H 0.042 0.958 29 H 0.070 0.930 30 H 0.106 0.894 31 H 0.134 0.866 32 H 0.092 0.908 33 H 0.058 0.942 34 H 0.104 0.896 35 H 0.249 0.751 36 H 0.226 0.774 37 H 0.260 0.740 38 H 0.290 0.710 39 H 0.195 0.805 40 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 2.824 5.346 22.906 23.691 hybrid contribution 0.391 -1.696 -0.845 1.934 sum 3.215 3.651 22.061 22.591 Atomic orbital electron populations 1.22289 0.97183 1.01412 1.00834 1.20553 0.92914 0.95446 0.85378 0.93883 1.22168 0.92433 1.02930 0.98436 1.20984 0.95915 0.80492 0.98846 0.93230 1.22091 1.00553 1.00305 0.97999 1.45711 1.15511 1.12000 1.61705 1.17831 0.82795 0.86486 0.77932 1.90811 1.52496 1.56652 1.43989 1.22030 0.99352 0.97225 1.09558 1.23977 0.98632 0.86772 0.86178 1.68555 1.18094 1.16945 1.21199 1.25897 0.83294 1.00775 0.84531 1.68209 1.38920 1.03777 1.17784 1.19767 0.87884 0.87287 0.83505 1.84647 1.49976 1.57694 1.36127 1.42828 1.79780 1.09453 1.07167 1.18947 1.33948 0.94067 0.87401 0.92999 1.25454 1.02929 1.02294 0.95443 1.69886 1.55432 1.37563 1.01179 0.85475 0.77512 0.81433 0.77785 1.20011 1.23292 1.17840 0.90002 0.95806 0.93016 0.89397 0.86583 0.90759 0.94189 0.89644 0.75055 0.77406 0.73976 0.70985 0.80500 0.93780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.60 9.49 71.98 0.68 -3.91 16 2 C 0.16 5.36 2.84 44.99 0.13 5.49 16 3 H 0.04 1.49 7.56 -2.39 -0.02 1.47 16 4 C -0.12 -2.70 4.29 30.59 0.13 -2.57 16 5 C 0.14 3.75 2.52 44.99 0.11 3.86 16 6 H 0.05 1.88 7.05 -2.39 -0.02 1.86 16 7 C -0.15 -3.07 9.48 71.98 0.68 -2.39 16 8 N -0.70 -16.81 4.40 -445.71 -1.96 -18.77 16 9 C 0.56 17.48 7.74 86.69 0.67 18.15 16 10 O -0.56 -22.58 14.98 16.23 0.24 -22.34 16 11 C -0.27 -7.14 5.92 -19.83 -0.12 -7.25 16 12 C 0.21 4.03 10.80 85.02 0.92 4.95 16 13 N -0.53 -10.21 10.42 -199.11 -2.07 -12.29 16 14 C 0.34 6.33 12.27 180.86 2.22 8.55 16 15 N -0.56 -13.99 10.45 -312.02 -3.26 -17.25 16 16 C 0.40 11.49 7.85 85.17 0.67 12.16 16 17 O -0.47 -14.38 11.81 -65.52 -0.77 -15.15 16 18 N -0.75 -33.69 4.30 -322.94 -1.39 -35.07 16 19 C -0.21 -12.22 10.41 84.03 0.87 -11.35 16 20 H 0.05 3.30 8.06 -2.91 -0.02 3.27 16 21 C -0.07 -4.32 5.50 84.86 0.47 -3.86 16 22 N -0.99 -66.34 13.97 21.65 0.30 -66.04 16 23 Si 0.95 47.98 27.73 68.60 1.90 49.88 16 24 H -0.27 -13.20 7.11 99.48 0.71 -12.50 16 25 H -0.31 -16.03 7.11 99.48 0.71 -15.32 16 26 H -0.25 -11.67 6.52 99.48 0.65 -11.03 16 27 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 28 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 29 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 30 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 31 H 0.12 1.56 8.14 -2.38 -0.02 1.54 16 32 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 33 H 0.04 0.96 8.14 -2.39 -0.02 0.94 16 34 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 35 H 0.41 6.51 6.73 -92.71 -0.62 5.88 16 36 H 0.21 2.24 6.53 -2.91 -0.02 2.22 16 37 H 0.24 2.27 8.06 -2.91 -0.02 2.25 16 38 H 0.43 8.64 9.06 -74.06 -0.67 7.97 16 39 H 0.36 15.97 5.66 -92.70 -0.52 15.44 16 40 H 0.25 16.35 8.31 -92.70 -0.77 15.58 16 Total: -1.00 -86.96 340.06 -0.36 -87.31 By element: Atomic # 1 Polarization: 28.68 SS G_CDS: -0.78 Total: 27.89 kcal Atomic # 6 Polarization: 14.38 SS G_CDS: 7.44 Total: 21.82 kcal Atomic # 7 Polarization: -141.04 SS G_CDS: -8.38 Total: -149.42 kcal Atomic # 8 Polarization: -36.96 SS G_CDS: -0.53 Total: -37.49 kcal Atomic # 14 Polarization: 47.98 SS G_CDS: 1.90 Total: 49.88 kcal Total: -86.96 -0.36 -87.31 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134721571.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.520 kcal (2) G-P(sol) polarization free energy of solvation -86.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.315 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds