Wall clock time and date at job start Tue Mar 31 2020 03:16:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34232 * 117.00223 * 2 1 4 4 O 1.20827 * 119.99756 * 0.02562 * 3 2 1 5 5 C 1.50702 * 120.00234 * 179.97438 * 3 2 1 6 6 H 1.08998 * 109.46613 * 60.00247 * 5 3 2 7 7 N 1.46500 * 109.47112 * 180.02562 * 5 3 2 8 8 C 1.38831 * 119.99679 * 276.27497 * 7 5 3 9 9 C 1.39957 * 119.97223 * 355.23380 * 8 7 5 10 10 N 1.32127 * 120.31585 * 180.02562 * 9 8 7 11 11 C 1.31932 * 120.27376 * 359.66035 * 10 9 8 12 12 C 1.40677 * 119.93084 * 0.61441 * 11 10 9 13 13 C 1.41279 * 120.15892 * 179.67877 * 12 11 10 14 14 H 1.08000 * 119.99483 * 6.01179 * 13 12 11 15 15 C 1.40048 * 120.00035 * 186.00772 * 13 12 11 16 16 N 1.30731 * 119.99576 * 183.35925 * 15 13 12 17 17 Si 1.86797 * 120.00248 * 3.36390 * 15 13 12 18 18 H 1.48499 * 109.47230 * 179.97438 * 17 15 13 19 19 H 1.48497 * 109.46889 * 299.99540 * 17 15 13 20 20 H 1.48500 * 109.47024 * 59.99723 * 17 15 13 21 21 N 1.32241 * 119.96366 * 175.25374 * 8 7 5 22 22 C 1.52999 * 109.47393 * 300.00204 * 5 3 2 23 23 C 1.52996 * 109.47122 * 181.18268 * 22 5 3 24 24 C 1.52995 * 109.47111 * 301.18951 * 22 5 3 25 25 N 1.46902 * 109.46846 * 61.18424 * 22 5 3 26 26 H 1.08993 * 109.47302 * 299.99675 * 1 2 3 27 27 H 1.08996 * 109.46535 * 60.00086 * 1 2 3 28 28 H 1.09000 * 109.47061 * 179.97438 * 1 2 3 29 29 H 0.96990 * 119.99976 * 96.27386 * 7 5 3 30 30 H 1.08001 * 119.84679 * 0.02562 * 9 8 7 31 31 H 1.08003 * 120.03474 * 180.30139 * 11 10 9 32 32 H 0.96998 * 120.00717 * 354.90683 * 16 15 13 33 33 H 1.08999 * 109.47124 * 65.20791 * 23 22 5 34 34 H 1.09002 * 109.46991 * 185.21041 * 23 22 5 35 35 H 1.09001 * 109.47268 * 305.21126 * 23 22 5 36 36 H 1.09001 * 109.47821 * 59.99669 * 24 22 5 37 37 H 1.08998 * 109.47231 * 180.02562 * 24 22 5 38 38 H 1.09004 * 109.46699 * 299.99158 * 24 22 5 39 39 H 1.00902 * 111.00145 * 60.00353 * 25 22 5 40 40 H 1.00900 * 111.00171 * 183.95299 * 25 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5664 1.2749 0.0006 6 1 3.9564 0.7806 -0.8892 7 7 3.9817 2.6798 0.0011 8 6 4.0530 3.3829 -1.1939 9 6 3.8251 2.7241 -2.4075 10 7 3.8916 3.3865 -3.5487 11 6 4.1670 4.6768 -3.5537 12 6 4.4037 5.3487 -2.3407 13 6 4.7057 6.7289 -2.3410 14 1 4.6601 7.2913 -3.2618 15 6 5.0639 7.3675 -1.1472 16 7 5.2793 8.6569 -1.1349 17 14 5.2341 6.3771 0.4274 18 1 5.6197 7.2804 1.5412 19 1 3.9382 5.7250 0.7444 20 1 6.2802 5.3384 0.2482 21 7 4.3365 4.6745 -1.1843 22 6 4.1130 0.5815 1.2501 23 6 5.6392 0.6873 1.2656 24 6 3.5421 1.2565 2.4988 25 7 3.7204 -0.8340 1.2359 26 1 -0.3633 0.5137 0.8899 27 1 -0.3632 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 4.2070 3.1186 0.8362 30 1 3.5937 1.6692 -2.4112 31 1 4.2157 5.2155 -4.4886 32 1 5.2637 9.1593 -1.9645 33 1 5.9299 1.7327 1.3693 34 1 6.0346 0.1152 2.1050 35 1 6.0405 0.2894 0.3336 36 1 2.4548 1.1812 2.4878 37 1 3.9319 0.7629 3.3890 38 1 3.8335 2.3069 2.5094 39 1 4.0855 -1.3024 0.4202 40 1 4.0141 -1.2992 2.0817 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001155369568.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:16:32 Heat of formation + Delta-G solvation = -45.535883 kcal Electronic energy + Delta-G solvation = -24821.217109 eV Core-core repulsion = 21249.808831 eV Total energy + Delta-G solvation = -3571.408278 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.148 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -40.66946 -39.29042 -38.01313 -36.17597 -34.65733 -34.04869 -32.28629 -30.16560 -29.19349 -28.22992 -27.48164 -26.28067 -25.80092 -22.85165 -21.61230 -21.02455 -19.61577 -18.46455 -17.46427 -17.28545 -16.67309 -16.19901 -16.05540 -15.59136 -15.24174 -14.65517 -14.26864 -14.03348 -13.71647 -13.69398 -13.34366 -12.97608 -12.96057 -12.71027 -12.40631 -12.38457 -12.04048 -11.88220 -11.53020 -11.50246 -11.17269 -11.00046 -10.92939 -10.66954 -10.51607 -10.01369 -9.89378 -9.43600 -9.12005 -8.97227 -8.86293 -7.74240 -7.23607 -7.14577 -4.94782 2.39591 2.46142 2.65453 2.92668 3.45599 3.52292 3.63471 3.93053 4.31624 4.34320 4.35829 4.58906 4.63158 4.76323 5.11325 5.21739 5.23446 5.29522 5.40193 5.50054 5.55780 5.59589 5.63599 5.66899 5.80397 5.88854 5.96803 6.02198 6.12956 6.41459 6.61750 6.72433 6.88772 7.18937 7.25524 7.29393 7.45685 7.73398 7.97722 8.09076 8.20501 8.47003 8.97180 9.43061 9.85482 Molecular weight = 294.15amu Principal moments of inertia in cm(-1) A = 0.018229 B = 0.005704 C = 0.005095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1535.670148 B = 4907.762396 C = 5494.231434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.334 6.334 3 C 0.447 3.553 4 O -0.494 6.494 5 C 0.186 3.814 6 H 0.116 0.884 7 N -0.706 5.706 8 C 0.411 3.589 9 C -0.167 4.167 10 N -0.394 5.394 11 C -0.088 4.088 12 C 0.237 3.763 13 C -0.451 4.451 14 H 0.089 0.911 15 C 0.044 3.956 16 N -0.793 5.793 17 Si 1.150 2.850 18 H -0.330 1.330 19 H -0.275 1.275 20 H -0.292 1.292 21 N -0.591 5.591 22 C 0.115 3.885 23 C -0.179 4.179 24 C -0.147 4.147 25 N -0.824 5.824 26 H 0.056 0.944 27 H 0.056 0.944 28 H 0.096 0.904 29 H 0.402 0.598 30 H 0.123 0.877 31 H 0.137 0.863 32 H 0.286 0.714 33 H 0.070 0.930 34 H 0.061 0.939 35 H 0.062 0.938 36 H 0.063 0.937 37 H 0.065 0.935 38 H 0.066 0.934 39 H 0.345 0.655 40 H 0.346 0.654 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.681 -17.336 7.375 18.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.249 6.249 3 C 0.286 3.714 4 O -0.379 6.379 5 C 0.075 3.925 6 H 0.133 0.867 7 N -0.344 5.344 8 C 0.171 3.829 9 C -0.327 4.327 10 N -0.104 5.104 11 C -0.259 4.259 12 C 0.112 3.888 13 C -0.484 4.484 14 H 0.108 0.892 15 C -0.179 4.179 16 N -0.413 5.413 17 Si 0.984 3.016 18 H -0.264 1.264 19 H -0.203 1.203 20 H -0.220 1.220 21 N -0.323 5.323 22 C 0.021 3.979 23 C -0.238 4.238 24 C -0.205 4.205 25 N -0.355 5.355 26 H 0.075 0.925 27 H 0.075 0.925 28 H 0.114 0.886 29 H 0.239 0.761 30 H 0.141 0.859 31 H 0.154 0.846 32 H 0.098 0.902 33 H 0.089 0.911 34 H 0.080 0.920 35 H 0.081 0.919 36 H 0.082 0.918 37 H 0.084 0.916 38 H 0.084 0.916 39 H 0.159 0.841 40 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -2.443 -16.722 8.741 19.026 hybrid contribution 0.414 0.152 -1.555 1.616 sum -2.029 -16.570 7.186 18.175 Atomic orbital electron populations 1.23161 0.77909 1.02943 1.01982 1.86634 1.21765 1.32702 1.83796 1.24437 0.92595 0.81674 0.72664 1.90715 1.66563 1.36570 1.44081 1.20210 0.87137 0.84335 1.00781 0.86676 1.43867 1.74154 1.09002 1.07329 1.18965 0.89088 0.89057 0.85816 1.21753 1.24121 0.99371 0.87457 1.67512 1.05300 1.08996 1.28612 1.22837 1.14388 0.90890 0.97787 1.19163 0.88394 0.94023 0.87220 1.20815 1.37091 0.92390 0.98066 0.89250 1.27848 0.88921 0.95618 1.05538 1.70632 1.30681 1.07406 1.32626 0.81921 0.78499 0.70911 0.70253 1.26354 1.20286 1.22027 1.66864 1.31189 1.05657 1.28556 1.20806 0.93521 0.89894 0.93654 1.22608 0.95069 1.03847 1.02315 1.21933 1.01803 1.00564 0.96195 1.58687 1.67935 1.00840 1.08051 0.92546 0.92496 0.88557 0.76105 0.85927 0.84565 0.90240 0.91097 0.91960 0.91856 0.91788 0.91579 0.91561 0.84120 0.84057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 10.56 101.05 1.07 1.46 16 2 O -0.33 -4.56 9.28 -39.26 -0.36 -4.92 16 3 C 0.45 7.29 5.94 36.01 0.21 7.51 16 4 O -0.49 -10.12 16.06 -18.75 -0.30 -10.43 16 5 C 0.19 2.69 1.68 -69.08 -0.12 2.57 16 6 H 0.12 1.59 6.34 -51.93 -0.33 1.26 16 7 N -0.71 -12.95 4.08 -54.92 -0.22 -13.17 16 8 C 0.41 9.42 7.48 -155.01 -1.16 8.26 16 9 C -0.17 -3.81 10.41 -16.78 -0.17 -3.99 16 10 N -0.39 -9.64 10.47 -12.11 -0.13 -9.77 16 11 C -0.09 -2.20 10.97 -16.59 -0.18 -2.38 16 12 C 0.24 6.30 6.38 -84.83 -0.54 5.76 16 13 C -0.45 -12.12 9.59 -37.75 -0.36 -12.48 16 14 H 0.09 2.35 8.05 -52.49 -0.42 1.93 16 15 C 0.04 1.17 5.52 -17.34 -0.10 1.08 16 16 N -0.79 -21.15 13.65 55.55 0.76 -20.39 16 17 Si 1.15 27.91 25.58 -169.99 -4.35 23.56 16 18 H -0.33 -7.90 7.11 56.52 0.40 -7.49 16 19 H -0.28 -6.80 6.65 56.52 0.38 -6.42 16 20 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 21 N -0.59 -15.21 4.76 -10.14 -0.05 -15.25 16 22 C 0.11 1.21 0.70 -131.61 -0.09 1.12 16 23 C -0.18 -1.72 8.51 37.16 0.32 -1.41 16 24 C -0.15 -1.60 8.31 37.15 0.31 -1.29 16 25 N -0.82 -6.82 7.50 0.74 0.01 -6.81 16 26 H 0.06 0.65 8.13 -51.93 -0.42 0.22 16 27 H 0.06 0.69 8.13 -51.93 -0.42 0.27 16 28 H 0.10 0.78 8.14 -51.93 -0.42 0.35 16 29 H 0.40 7.17 6.74 -40.82 -0.28 6.89 16 30 H 0.12 2.45 6.16 -52.49 -0.32 2.13 16 31 H 0.14 3.14 8.06 -52.48 -0.42 2.72 16 32 H 0.29 7.24 8.72 -40.82 -0.36 6.89 16 33 H 0.07 0.80 7.50 -51.93 -0.39 0.41 16 34 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.06 0.79 7.18 -51.93 -0.37 0.42 16 37 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.07 0.78 6.57 -51.93 -0.34 0.44 16 39 H 0.35 2.51 9.00 -39.29 -0.35 2.15 16 40 H 0.35 2.18 8.98 -39.29 -0.35 1.83 16 LS Contribution 330.43 15.07 4.98 4.98 Total: -1.00 -32.42 330.43 -5.79 -38.21 By element: Atomic # 1 Polarization: 13.08 SS G_CDS: -5.30 Total: 7.79 kcal Atomic # 6 Polarization: 7.03 SS G_CDS: -0.82 Total: 6.22 kcal Atomic # 7 Polarization: -65.76 SS G_CDS: 0.36 Total: -65.40 kcal Atomic # 8 Polarization: -14.68 SS G_CDS: -0.67 Total: -15.35 kcal Atomic # 14 Polarization: 27.91 SS G_CDS: -4.35 Total: 23.56 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -32.42 -5.79 -38.21 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001155369568.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.331 kcal (2) G-P(sol) polarization free energy of solvation -32.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.205 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds