Wall clock time and date at job start Tue Mar 31 2020 04:37:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.34259 * 125.39539 * 2 1 4 4 C 1.38213 * 108.39377 * 180.26060 * 3 2 1 5 5 C 1.47394 * 126.45931 * 179.73062 * 4 3 2 6 6 N 1.34779 * 119.99786 * 180.02562 * 5 4 3 7 7 O 1.21608 * 120.00210 * 0.02562 * 5 4 3 8 8 C 1.41300 * 107.07644 * 359.72239 * 4 3 2 9 9 C 1.36350 * 107.01090 * 0.02562 * 8 4 3 10 10 C 1.46815 * 125.84710 * 180.02562 * 9 8 4 11 11 O 1.21678 * 119.99741 * 184.18555 * 10 9 8 12 12 N 1.34772 * 119.99998 * 4.17611 * 10 9 8 13 13 C 1.46500 * 119.99659 * 174.31401 * 12 10 9 14 14 C 1.53004 * 109.47196 * 180.02562 * 13 12 10 15 15 C 1.53003 * 109.47430 * 180.02562 * 14 13 12 16 16 N 1.46492 * 109.47299 * 179.97438 * 15 14 13 17 17 C 1.36933 * 120.00470 * 179.97438 * 16 15 14 18 18 H 1.08007 * 119.99456 * 0.02562 * 17 16 15 19 19 C 1.38808 * 120.00637 * 179.97438 * 17 16 15 20 20 N 1.31621 * 119.99812 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 120.00334 * 180.02562 * 19 17 16 22 22 H 1.48503 * 109.47088 * 89.99687 * 21 19 17 23 23 H 1.48497 * 109.47322 * 209.99766 * 21 19 17 24 24 H 1.48501 * 109.47224 * 330.00085 * 21 19 17 25 25 H 1.09000 * 109.47464 * 264.48438 * 1 2 3 26 26 H 1.09010 * 109.46656 * 24.48442 * 1 2 3 27 27 H 1.09000 * 109.47469 * 144.47873 * 1 2 3 28 28 H 1.07995 * 125.80486 * 359.96337 * 3 2 1 29 29 H 0.97001 * 119.99930 * 0.02562 * 6 5 4 30 30 H 0.97000 * 119.99540 * 179.97438 * 6 5 4 31 31 H 1.08005 * 126.49362 * 179.97438 * 8 4 3 32 32 H 0.96994 * 120.00132 * 354.31624 * 12 10 9 33 33 H 1.09001 * 109.47320 * 300.00201 * 13 12 10 34 34 H 1.08996 * 109.47333 * 60.00556 * 13 12 10 35 35 H 1.09001 * 109.46789 * 300.00084 * 14 13 12 36 36 H 1.08991 * 109.47182 * 59.99454 * 14 13 12 37 37 H 1.08999 * 109.46538 * 299.99680 * 15 14 13 38 38 H 1.08999 * 109.47343 * 59.99179 * 15 14 13 39 39 H 0.97006 * 120.00153 * 359.97438 * 16 15 14 40 40 H 0.97001 * 119.99718 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2426 1.0944 0.0000 4 6 3.5643 0.6903 -0.0060 5 6 4.7485 1.5679 -0.0136 6 7 5.9849 1.0312 -0.0194 7 8 4.6101 2.7760 -0.0147 8 6 3.5662 -0.7227 -0.0031 9 6 2.2629 -1.1233 0.0037 10 6 1.7907 -2.5134 0.0093 11 8 0.5996 -2.7516 -0.0617 12 7 2.6766 -3.5256 0.0927 13 6 2.2019 -4.9054 0.2238 14 6 3.4013 -5.8524 0.2987 15 6 2.9057 -7.2935 0.4349 16 7 4.0540 -8.2003 0.5060 17 6 3.8547 -9.5492 0.6314 18 1 2.8507 -9.9446 0.6776 19 6 4.9428 -10.4085 0.6982 20 7 6.1663 -9.9267 0.6405 21 14 4.6707 -12.2486 0.8686 22 1 4.5839 -12.8632 -0.4805 23 1 5.8055 -12.8499 1.6143 24 1 3.4065 -12.4958 1.6074 25 1 -0.3634 -0.0988 1.0229 26 1 -0.3633 0.9354 -0.4260 27 1 -0.3634 -0.8364 -0.5971 28 1 1.8946 2.1168 -0.0006 29 1 6.0953 0.0675 -0.0189 30 1 6.7642 1.6088 -0.0248 31 1 4.4353 -1.3639 -0.0067 32 1 3.6283 -3.3406 0.0660 33 1 1.6073 -5.0003 1.1323 34 1 1.5891 -5.1625 -0.6401 35 1 3.9963 -5.7576 -0.6097 36 1 4.0139 -5.5953 1.1627 37 1 2.3105 -7.3886 1.3431 38 1 2.2932 -7.5504 -0.4294 39 1 4.9558 -7.8452 0.4642 40 1 6.9267 -10.5271 0.6876 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001161894792.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:37:33 Heat of formation + Delta-G solvation = -24.485942 kcal Electronic energy + Delta-G solvation = -22229.681970 eV Core-core repulsion = 18659.186487 eV Total energy + Delta-G solvation = -3570.495484 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.148 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.01294 -39.53317 -38.90565 -36.12936 -34.59532 -34.04684 -33.05680 -32.05946 -30.39426 -29.08031 -27.27261 -25.44296 -23.57454 -23.05105 -21.98568 -21.25795 -20.24960 -19.64771 -18.60267 -17.08828 -17.01877 -16.62098 -16.23203 -15.91111 -15.71833 -15.49098 -14.72323 -14.68220 -14.34999 -14.22289 -13.90263 -13.74615 -13.30843 -13.07555 -12.87412 -12.68535 -12.65216 -12.43909 -11.71833 -11.02412 -10.96518 -10.83372 -10.67463 -10.45196 -10.16975 -10.04261 -9.93781 -9.74377 -9.29673 -9.25351 -8.91390 -8.67846 -6.97280 -5.80620 -3.09674 1.13183 1.45112 2.16989 2.99607 3.05515 3.30346 3.41777 3.46289 3.47272 3.48674 4.37508 4.41102 4.52125 4.55901 4.76016 4.83826 4.89258 5.04589 5.22842 5.23444 5.34034 5.47750 5.53934 5.55048 5.88655 5.98791 6.07866 6.13590 6.26565 6.31634 6.36121 6.56147 6.64576 6.73371 6.77632 7.12975 7.30457 7.66992 7.96771 8.07208 8.38419 9.49628 10.06218 10.40733 11.42382 Molecular weight = 294.15amu Principal moments of inertia in cm(-1) A = 0.022764 B = 0.002387 C = 0.002167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1229.719040 B =11726.899360 C =12920.166239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.062 3.938 2 N -0.399 5.399 3 C 0.095 3.905 4 C -0.240 4.240 5 C 0.597 3.403 6 N -0.851 5.851 7 O -0.557 6.557 8 C -0.106 4.106 9 C -0.048 4.048 10 C 0.585 3.415 11 O -0.548 6.548 12 N -0.713 5.713 13 C 0.125 3.875 14 C -0.138 4.138 15 C 0.157 3.843 16 N -0.734 5.734 17 C -0.241 4.241 18 H 0.071 0.929 19 C -0.014 4.014 20 N -0.934 5.934 21 Si 0.909 3.091 22 H -0.289 1.289 23 H -0.291 1.291 24 H -0.281 1.281 25 H 0.082 0.918 26 H 0.088 0.912 27 H 0.107 0.893 28 H 0.184 0.816 29 H 0.402 0.598 30 H 0.403 0.597 31 H 0.152 0.848 32 H 0.403 0.597 33 H 0.070 0.930 34 H 0.072 0.928 35 H 0.070 0.930 36 H 0.070 0.930 37 H 0.022 0.978 38 H 0.022 0.978 39 H 0.384 0.616 40 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.984 23.694 -1.648 24.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 N -0.070 5.070 3 C -0.047 4.047 4 C -0.250 4.250 5 C 0.384 3.616 6 N -0.414 5.414 7 O -0.436 6.436 8 C -0.132 4.132 9 C -0.160 4.160 10 C 0.372 3.628 11 O -0.427 6.427 12 N -0.364 5.364 13 C 0.002 3.998 14 C -0.177 4.177 15 C 0.028 3.972 16 N -0.378 5.378 17 C -0.372 4.372 18 H 0.089 0.911 19 C -0.210 4.210 20 N -0.583 5.583 21 Si 0.739 3.261 22 H -0.217 1.217 23 H -0.217 1.217 24 H -0.207 1.207 25 H 0.101 0.899 26 H 0.107 0.893 27 H 0.125 0.875 28 H 0.202 0.798 29 H 0.231 0.769 30 H 0.234 0.766 31 H 0.169 0.831 32 H 0.238 0.762 33 H 0.089 0.911 34 H 0.090 0.910 35 H 0.089 0.911 36 H 0.089 0.911 37 H 0.040 0.960 38 H 0.040 0.960 39 H 0.217 0.783 40 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -7.604 23.992 -1.653 25.223 hybrid contribution 1.125 -1.107 0.087 1.580 sum -6.480 22.886 -1.566 23.837 Atomic orbital electron populations 1.22420 0.75083 1.05407 1.04917 1.43659 1.07585 1.04834 1.50907 1.22338 0.89430 0.92031 1.00906 1.19417 0.92840 0.93216 1.19508 1.17357 0.82853 0.86834 0.74512 1.43630 1.07653 1.11820 1.78287 1.90810 1.86720 1.14802 1.51311 1.21212 0.95167 0.94127 1.02666 1.19779 0.90133 0.87949 1.18117 1.16960 0.85859 0.83282 0.76656 1.90794 1.15873 1.85134 1.50919 1.45720 1.09793 1.06782 1.74093 1.21419 0.97432 0.78492 1.02495 1.21957 0.96945 0.95912 1.02838 1.20511 0.91485 0.87002 0.98163 1.42330 1.03394 1.03172 1.88913 1.19238 0.92721 0.82984 1.42228 0.91093 1.24754 0.95210 0.98170 1.02904 1.69658 0.97097 1.33957 1.57593 0.86165 0.76950 0.85347 0.77591 1.21670 1.21732 1.20715 0.89943 0.89349 0.87500 0.79850 0.76946 0.76580 0.83052 0.76238 0.91124 0.90982 0.91140 0.91141 0.96034 0.96023 0.78282 0.93478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.43 10.41 59.84 0.62 1.05 16 2 N -0.40 -3.58 3.12 -120.13 -0.38 -3.96 16 3 C 0.10 0.82 11.16 -16.50 -0.18 0.64 16 4 C -0.24 -2.23 6.13 -105.02 -0.64 -2.87 16 5 C 0.60 5.97 8.09 -12.53 -0.10 5.87 16 6 N -0.85 -5.29 8.87 30.43 0.27 -5.02 16 7 O -0.56 -7.60 17.74 5.27 0.09 -7.50 16 8 C -0.11 -0.88 9.75 -39.10 -0.38 -1.26 16 9 C -0.05 -0.49 6.82 -82.40 -0.56 -1.05 16 10 C 0.59 6.98 7.78 -12.79 -0.10 6.88 16 11 O -0.55 -8.05 14.70 5.21 0.08 -7.97 16 12 N -0.71 -7.50 5.54 -61.58 -0.34 -7.84 16 13 C 0.12 1.55 5.68 -4.04 -0.02 1.52 16 14 C -0.14 -1.95 5.44 -26.73 -0.15 -2.10 16 15 C 0.16 2.99 6.26 -4.04 -0.03 2.96 16 16 N -0.73 -18.18 5.60 -59.91 -0.34 -18.52 16 17 C -0.24 -6.68 9.99 -15.06 -0.15 -6.83 16 18 H 0.07 1.91 7.83 -52.48 -0.41 1.50 16 19 C -0.01 -0.41 5.50 -17.43 -0.10 -0.51 16 20 N -0.93 -27.88 13.06 55.49 0.72 -27.16 16 21 Si 0.91 22.19 29.55 -169.99 -5.02 17.17 16 22 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 23 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 24 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 25 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.09 0.35 8.11 -51.92 -0.42 -0.08 16 27 H 0.11 0.91 6.51 -51.93 -0.34 0.57 16 28 H 0.18 1.20 8.06 -52.49 -0.42 0.77 16 29 H 0.40 1.54 7.81 -40.82 -0.32 1.22 16 30 H 0.40 2.04 8.93 -40.82 -0.36 1.67 16 31 H 0.15 0.78 6.87 -52.48 -0.36 0.42 16 32 H 0.40 3.20 7.32 -40.82 -0.30 2.90 16 33 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 34 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 35 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 36 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 37 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 38 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 39 H 0.38 9.86 7.67 -40.82 -0.31 9.55 16 40 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 LS Contribution 346.90 15.07 5.23 5.23 Total: -1.00 -36.37 346.90 -6.81 -43.18 By element: Atomic # 1 Polarization: 13.43 SS G_CDS: -5.34 Total: 8.09 kcal Atomic # 6 Polarization: 6.09 SS G_CDS: -1.79 Total: 4.30 kcal Atomic # 7 Polarization: -62.43 SS G_CDS: -0.06 Total: -62.49 kcal Atomic # 8 Polarization: -15.64 SS G_CDS: 0.17 Total: -15.47 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -5.02 Total: 17.17 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -36.37 -6.81 -43.18 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161894792.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.694 kcal (2) G-P(sol) polarization free energy of solvation -36.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.180 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds