Wall clock time and date at job start Tue Mar 31 2020 03:24:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47060 * 2 1 4 4 N 1.46500 * 109.47023 * 240.00240 * 2 1 3 5 5 C 1.34946 * 126.03695 * 84.71491 * 4 2 1 6 6 C 1.35317 * 107.74396 * 179.84143 * 5 4 2 7 7 C 1.39864 * 107.92273 * 0.41968 * 6 5 4 8 8 C 1.50703 * 125.90253 * 179.72381 * 7 6 5 9 9 C 1.50693 * 109.47307 * 125.00096 * 8 7 6 10 10 O 1.21278 * 120.00264 * 359.97438 * 9 8 7 11 11 N 1.34780 * 120.00033 * 180.02562 * 9 8 7 12 12 C 1.46498 * 120.00152 * 179.97438 * 11 9 8 13 13 C 1.50703 * 109.46901 * 179.97438 * 12 11 9 14 14 O 1.21293 * 119.99856 * 359.97438 * 13 12 11 15 15 N 1.34777 * 119.99862 * 179.97438 * 13 12 11 16 16 C 1.37100 * 120.00110 * 180.02562 * 15 13 12 17 17 H 1.08000 * 119.99948 * 359.97438 * 16 15 13 18 18 C 1.38944 * 119.99852 * 179.97438 * 16 15 13 19 19 N 1.31405 * 120.00517 * 0.02562 * 18 16 15 20 20 Si 1.86809 * 119.99699 * 180.02562 * 18 16 15 21 21 H 1.48495 * 109.46977 * 90.00119 * 20 18 16 22 22 H 1.48500 * 109.46842 * 210.00107 * 20 18 16 23 23 H 1.48494 * 109.46971 * 329.99806 * 20 18 16 24 24 N 1.30839 * 108.19848 * 359.73815 * 7 6 5 25 25 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47194 * 299.99650 * 1 2 3 27 27 H 1.08992 * 109.47399 * 59.99823 * 1 2 3 28 28 H 1.09002 * 109.47398 * 120.00169 * 2 1 3 29 29 H 1.09002 * 109.47153 * 300.00319 * 3 2 1 30 30 H 1.08998 * 109.47533 * 59.99948 * 3 2 1 31 31 H 1.08996 * 109.47853 * 180.02562 * 3 2 1 32 32 H 1.07997 * 126.12996 * 359.97438 * 5 4 2 33 33 H 1.08002 * 126.03809 * 180.16600 * 6 5 4 34 34 H 1.09002 * 109.46447 * 244.99777 * 8 7 6 35 35 H 1.09004 * 109.46816 * 4.99511 * 8 7 6 36 36 H 0.97005 * 119.99680 * 359.97438 * 11 9 8 37 37 H 1.09003 * 109.47027 * 299.99692 * 12 11 9 38 38 H 1.08997 * 109.47113 * 59.99638 * 12 11 9 39 39 H 0.97001 * 119.99621 * 359.97438 * 15 13 12 40 40 H 0.97003 * 120.00438 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.1882 -0.1405 -2.4167 6 6 2.6566 -1.1050 -3.2422 7 6 2.7681 -2.2872 -2.5031 8 6 3.2457 -3.6164 -3.0289 9 6 4.3913 -4.1090 -2.1828 10 8 4.7819 -3.4459 -1.2455 11 7 4.9825 -5.2860 -2.4684 12 6 6.0966 -5.7647 -1.6463 13 6 6.5740 -7.0939 -2.1721 14 8 6.0362 -7.5925 -3.1382 15 7 7.5986 -7.7285 -1.5687 16 6 8.0333 -8.9375 -2.0473 17 1 7.5544 -9.3815 -2.9076 18 6 9.0898 -9.5915 -1.4257 19 7 9.6722 -9.0515 -0.3787 20 14 9.6826 -11.2384 -2.0782 21 1 10.7432 -11.0158 -3.0935 22 1 10.2304 -12.0461 -0.9590 23 1 8.5454 -11.9624 -2.7008 24 7 2.3857 -2.0399 -1.2766 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 1.8934 -0.5139 0.8900 29 1 1.6766 1.9563 -0.8900 30 1 1.6767 1.9564 0.8899 31 1 3.1299 1.4426 -0.0005 32 1 1.9883 0.8861 -2.6859 33 1 2.8977 -0.9843 -4.2880 34 1 2.4289 -4.3371 -2.9898 35 1 3.5791 -3.5005 -4.0602 36 1 4.6703 -5.8162 -3.2184 37 1 6.9130 -5.0436 -1.6854 38 1 5.7634 -5.8807 -0.6150 39 1 8.0288 -7.3295 -0.7964 40 1 10.4096 -9.5083 0.0555 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001262336531.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:24:43 Heat of formation + Delta-G solvation = -3.970073 kcal Electronic energy + Delta-G solvation = -22417.484460 eV Core-core repulsion = 18847.878612 eV Total energy + Delta-G solvation = -3569.605849 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.148 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.32886 -39.36391 -38.04022 -36.07502 -34.37504 -33.58010 -32.04843 -31.33992 -30.00392 -28.74587 -27.72232 -26.88896 -24.42521 -22.93081 -20.74970 -20.21643 -19.68480 -19.29354 -18.06116 -17.26267 -16.97329 -15.69254 -15.52763 -15.34981 -15.16315 -14.72087 -14.40854 -14.29849 -14.02950 -13.73158 -13.63358 -13.33806 -12.97187 -12.80909 -12.68334 -12.40646 -12.19912 -12.13236 -11.77052 -11.64911 -11.60841 -11.44792 -11.10263 -10.52911 -10.44094 -10.29602 -9.63072 -9.61149 -9.21367 -8.69383 -8.60102 -8.57158 -8.07521 -6.48969 -3.90973 1.89630 2.37740 2.72347 2.96788 3.13694 3.23533 3.28769 3.57165 3.77557 4.14112 4.16241 4.48836 4.60159 4.65391 4.69689 4.92691 5.03601 5.04256 5.19375 5.19602 5.24003 5.25450 5.40622 5.44713 5.55325 5.65477 5.72182 5.81494 5.95861 6.01592 6.04239 6.11705 6.61986 6.77540 7.00460 7.48317 7.77776 7.91291 7.95047 8.47681 8.58309 9.07122 9.42350 9.90312 10.68002 Molecular weight = 294.15amu Principal moments of inertia in cm(-1) A = 0.040739 B = 0.002317 C = 0.002249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 687.138118 B =12083.944955 C =12445.219752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.154 3.846 3 C -0.163 4.163 4 N -0.368 5.368 5 C 0.048 3.952 6 C -0.266 4.266 7 C 0.085 3.915 8 C -0.058 4.058 9 C 0.513 3.487 10 O -0.534 6.534 11 N -0.710 5.710 12 C 0.111 3.889 13 C 0.429 3.571 14 O -0.597 6.597 15 N -0.550 5.550 16 C -0.304 4.304 17 H 0.106 0.894 18 C 0.025 3.975 19 N -0.895 5.895 20 Si 0.933 3.067 21 H -0.277 1.277 22 H -0.283 1.283 23 H -0.269 1.269 24 N -0.261 5.261 25 H 0.065 0.935 26 H 0.075 0.925 27 H 0.061 0.939 28 H 0.103 0.897 29 H 0.064 0.936 30 H 0.081 0.919 31 H 0.067 0.933 32 H 0.168 0.832 33 H 0.146 0.854 34 H 0.109 0.891 35 H 0.113 0.887 36 H 0.410 0.590 37 H 0.082 0.918 38 H 0.082 0.918 39 H 0.396 0.604 40 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.831 19.662 -1.538 25.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.052 3.948 3 C -0.222 4.222 4 N -0.151 5.151 5 C -0.097 4.097 6 C -0.296 4.296 7 C -0.083 4.083 8 C -0.100 4.100 9 C 0.298 3.702 10 O -0.410 6.410 11 N -0.365 5.365 12 C -0.017 4.017 13 C 0.215 3.785 14 O -0.484 6.484 15 N -0.185 5.185 16 C -0.434 4.434 17 H 0.123 0.877 18 C -0.178 4.178 19 N -0.536 5.536 20 Si 0.760 3.240 21 H -0.203 1.203 22 H -0.208 1.208 23 H -0.193 1.193 24 N -0.082 5.082 25 H 0.084 0.916 26 H 0.094 0.906 27 H 0.080 0.920 28 H 0.121 0.879 29 H 0.083 0.917 30 H 0.099 0.901 31 H 0.087 0.913 32 H 0.185 0.815 33 H 0.164 0.836 34 H 0.127 0.873 35 H 0.131 0.869 36 H 0.248 0.752 37 H 0.100 0.900 38 H 0.100 0.900 39 H 0.230 0.770 40 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -15.954 19.318 -0.064 25.054 hybrid contribution 0.692 -0.410 -0.930 1.230 sum -15.262 18.907 -0.994 24.319 Atomic orbital electron populations 1.22233 0.93765 1.03317 1.02841 1.21228 0.94590 0.92697 0.86277 1.22185 1.02552 0.94029 1.03401 1.48841 1.50536 1.07534 1.08177 1.22340 1.01922 0.99705 0.85742 1.21321 1.14373 0.92427 1.01442 1.21531 0.99793 0.95456 0.91497 1.20003 0.97430 0.92564 1.00012 1.20295 0.83789 0.80918 0.85239 1.90721 1.64248 1.56257 1.29793 1.45676 1.34868 1.21670 1.34299 1.20914 0.90036 0.95465 0.95301 1.19774 0.84347 0.87386 0.86987 1.90490 1.59683 1.68548 1.29679 1.41807 1.28712 1.19411 1.28594 1.19730 1.14343 0.95648 1.13655 0.87670 1.25328 0.96480 1.00109 0.95878 1.69615 1.23896 1.39721 1.20329 0.85810 0.79041 0.80944 0.78213 1.20279 1.20828 1.19315 1.77447 1.19167 0.92535 1.19076 0.91578 0.90585 0.92015 0.87935 0.91654 0.90060 0.91348 0.81482 0.83637 0.87265 0.86911 0.75174 0.89998 0.89981 0.77043 0.91616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.08 9.52 37.16 0.35 -0.72 16 2 C 0.15 1.31 3.93 -67.93 -0.27 1.04 16 3 C -0.16 -0.95 8.84 37.16 0.33 -0.62 16 4 N -0.37 -4.38 3.52 -54.87 -0.19 -4.57 16 5 C 0.05 0.49 10.59 -17.22 -0.18 0.31 16 6 C -0.27 -3.04 10.72 -40.01 -0.43 -3.47 16 7 C 0.08 1.18 6.01 -82.41 -0.50 0.69 16 8 C -0.06 -0.72 6.28 -29.04 -0.18 -0.90 16 9 C 0.51 8.49 7.82 -10.99 -0.09 8.41 16 10 O -0.53 -10.86 15.56 5.56 0.09 -10.77 16 11 N -0.71 -12.07 5.53 -61.47 -0.34 -12.41 16 12 C 0.11 2.11 6.15 -5.19 -0.03 2.08 16 13 C 0.43 10.01 7.85 -10.98 -0.09 9.93 16 14 O -0.60 -15.39 15.24 5.55 0.08 -15.31 16 15 N -0.55 -13.88 5.29 -10.96 -0.06 -13.94 16 16 C -0.30 -8.36 9.68 -14.93 -0.14 -8.50 16 17 H 0.11 3.00 7.16 -52.49 -0.38 2.62 16 18 C 0.02 0.66 5.50 -17.47 -0.10 0.56 16 19 N -0.90 -24.21 13.05 55.50 0.72 -23.49 16 20 Si 0.93 20.72 29.55 -169.99 -5.02 15.70 16 21 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 22 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 23 H -0.27 -5.94 7.11 56.52 0.40 -5.53 16 24 N -0.26 -4.07 11.92 33.67 0.40 -3.66 16 25 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 27 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 29 H 0.06 0.30 7.16 -51.93 -0.37 -0.07 16 30 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.17 1.06 7.27 -52.49 -0.38 0.68 16 33 H 0.15 1.29 8.06 -52.49 -0.42 0.87 16 34 H 0.11 1.14 8.14 -51.93 -0.42 0.72 16 35 H 0.11 1.05 8.12 -51.93 -0.42 0.63 16 36 H 0.41 6.64 7.44 -40.82 -0.30 6.34 16 37 H 0.08 1.52 8.14 -51.93 -0.42 1.09 16 38 H 0.08 1.54 8.14 -51.93 -0.42 1.11 16 39 H 0.40 9.64 7.90 -40.82 -0.32 9.31 16 40 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 LS Contribution 348.57 15.07 5.25 5.25 Total: -1.00 -35.01 348.57 -5.92 -40.94 By element: Atomic # 1 Polarization: 19.03 SS G_CDS: -5.54 Total: 13.49 kcal Atomic # 6 Polarization: 10.10 SS G_CDS: -1.32 Total: 8.78 kcal Atomic # 7 Polarization: -58.61 SS G_CDS: 0.53 Total: -58.08 kcal Atomic # 8 Polarization: -26.25 SS G_CDS: 0.17 Total: -26.08 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.70 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -35.01 -5.92 -40.94 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001262336531.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.966 kcal (2) G-P(sol) polarization free energy of solvation -35.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.936 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds