Wall clock time and date at job start Tue Mar 31 2020 03:24:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47060 * 2 1 4 4 N 1.46500 * 109.47023 * 240.00240 * 2 1 3 5 5 C 1.34946 * 126.03695 * 84.71491 * 4 2 1 6 6 C 1.35317 * 107.74396 * 179.84143 * 5 4 2 7 7 C 1.39864 * 107.92273 * 0.41968 * 6 5 4 8 8 C 1.50703 * 125.90253 * 179.72381 * 7 6 5 9 9 C 1.50693 * 109.47307 * 125.00096 * 8 7 6 10 10 O 1.21278 * 120.00264 * 359.97438 * 9 8 7 11 11 N 1.34780 * 120.00033 * 180.02562 * 9 8 7 12 12 C 1.46498 * 120.00152 * 179.97438 * 11 9 8 13 13 C 1.50703 * 109.46901 * 179.97438 * 12 11 9 14 14 O 1.21293 * 119.99856 * 359.97438 * 13 12 11 15 15 N 1.34777 * 119.99862 * 179.97438 * 13 12 11 16 16 C 1.37100 * 120.00110 * 180.02562 * 15 13 12 17 17 H 1.08000 * 119.99948 * 359.97438 * 16 15 13 18 18 C 1.38944 * 119.99852 * 179.97438 * 16 15 13 19 19 N 1.31405 * 120.00517 * 0.02562 * 18 16 15 20 20 Si 1.86809 * 119.99699 * 180.02562 * 18 16 15 21 21 H 1.48495 * 109.46977 * 90.00119 * 20 18 16 22 22 H 1.48500 * 109.46842 * 210.00107 * 20 18 16 23 23 H 1.48494 * 109.46971 * 329.99806 * 20 18 16 24 24 N 1.30839 * 108.19848 * 359.73815 * 7 6 5 25 25 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47194 * 299.99650 * 1 2 3 27 27 H 1.08992 * 109.47399 * 59.99823 * 1 2 3 28 28 H 1.09002 * 109.47398 * 120.00169 * 2 1 3 29 29 H 1.09002 * 109.47153 * 300.00319 * 3 2 1 30 30 H 1.08998 * 109.47533 * 59.99948 * 3 2 1 31 31 H 1.08996 * 109.47853 * 180.02562 * 3 2 1 32 32 H 1.07997 * 126.12996 * 359.97438 * 5 4 2 33 33 H 1.08002 * 126.03809 * 180.16600 * 6 5 4 34 34 H 1.09002 * 109.46447 * 244.99777 * 8 7 6 35 35 H 1.09004 * 109.46816 * 4.99511 * 8 7 6 36 36 H 0.97005 * 119.99680 * 359.97438 * 11 9 8 37 37 H 1.09003 * 109.47027 * 299.99692 * 12 11 9 38 38 H 1.08997 * 109.47113 * 59.99638 * 12 11 9 39 39 H 0.97001 * 119.99621 * 359.97438 * 15 13 12 40 40 H 0.97003 * 120.00438 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.1882 -0.1405 -2.4167 6 6 2.6566 -1.1050 -3.2422 7 6 2.7681 -2.2872 -2.5031 8 6 3.2457 -3.6164 -3.0289 9 6 4.3913 -4.1090 -2.1828 10 8 4.7819 -3.4459 -1.2455 11 7 4.9825 -5.2860 -2.4684 12 6 6.0966 -5.7647 -1.6463 13 6 6.5740 -7.0939 -2.1721 14 8 6.0362 -7.5925 -3.1382 15 7 7.5986 -7.7285 -1.5687 16 6 8.0333 -8.9375 -2.0473 17 1 7.5544 -9.3815 -2.9076 18 6 9.0898 -9.5915 -1.4257 19 7 9.6722 -9.0515 -0.3787 20 14 9.6826 -11.2384 -2.0782 21 1 10.7432 -11.0158 -3.0935 22 1 10.2304 -12.0461 -0.9590 23 1 8.5454 -11.9624 -2.7008 24 7 2.3857 -2.0399 -1.2766 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 1.8934 -0.5139 0.8900 29 1 1.6766 1.9563 -0.8900 30 1 1.6767 1.9564 0.8899 31 1 3.1299 1.4426 -0.0005 32 1 1.9883 0.8861 -2.6859 33 1 2.8977 -0.9843 -4.2880 34 1 2.4289 -4.3371 -2.9898 35 1 3.5791 -3.5005 -4.0602 36 1 4.6703 -5.8162 -3.2184 37 1 6.9130 -5.0436 -1.6854 38 1 5.7634 -5.8807 -0.6150 39 1 8.0288 -7.3295 -0.7964 40 1 10.4096 -9.5083 0.0555 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001262336531.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:24:42 Heat of formation + Delta-G solvation = -30.181721 kcal Electronic energy + Delta-G solvation = -22418.621083 eV Core-core repulsion = 18847.878612 eV Total energy + Delta-G solvation = -3570.742471 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.148 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.19568 -40.86269 -39.81067 -36.77989 -36.23044 -35.23449 -33.39964 -32.95556 -30.86632 -29.95078 -28.35764 -28.14397 -26.29218 -23.70809 -21.97501 -21.37560 -20.99163 -20.53485 -20.02029 -18.46159 -17.96786 -17.23761 -17.01430 -16.82151 -16.33216 -16.07722 -15.74382 -15.69607 -15.32280 -14.87617 -14.62543 -14.46256 -13.94148 -13.86649 -13.64067 -13.56283 -13.49969 -13.19430 -13.03627 -12.91661 -12.79612 -12.45849 -12.32626 -12.12490 -12.05115 -11.57018 -11.44312 -10.98365 -10.56222 -10.18891 -10.13847 -10.07412 -9.41556 -8.51189 -6.01680 1.05039 1.36509 1.42668 1.55625 1.63114 1.66561 1.77633 1.90938 2.19913 2.37852 3.13951 3.15831 3.48054 3.75631 3.90942 3.95287 4.06018 4.10788 4.25249 4.29595 4.42302 4.45205 4.55000 4.61281 4.65120 4.78654 4.84566 4.89089 4.95235 5.15494 5.18832 5.23320 5.31245 5.38573 5.75432 5.91601 6.28369 6.46259 6.58633 6.88971 7.02935 7.24320 7.44205 7.93583 8.65858 Molecular weight = 294.15amu Principal moments of inertia in cm(-1) A = 0.040739 B = 0.002317 C = 0.002249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 687.138118 B =12083.944955 C =12445.219752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.142 3.858 3 C -0.155 4.155 4 N -0.372 5.372 5 C 0.056 3.944 6 C -0.281 4.281 7 C 0.063 3.937 8 C -0.051 4.051 9 C 0.514 3.486 10 O -0.574 6.574 11 N -0.708 5.708 12 C 0.123 3.877 13 C 0.435 3.565 14 O -0.621 6.621 15 N -0.561 5.561 16 C -0.337 4.337 17 H 0.088 0.912 18 C -0.013 4.013 19 N -0.918 5.918 20 Si 0.999 3.001 21 H -0.269 1.269 22 H -0.272 1.272 23 H -0.269 1.269 24 N -0.319 5.319 25 H 0.042 0.958 26 H 0.099 0.901 27 H 0.072 0.928 28 H 0.082 0.918 29 H 0.083 0.917 30 H 0.103 0.897 31 H 0.051 0.949 32 H 0.208 0.792 33 H 0.170 0.830 34 H 0.128 0.872 35 H 0.147 0.853 36 H 0.416 0.584 37 H 0.090 0.910 38 H 0.087 0.913 39 H 0.398 0.602 40 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.588 21.011 -2.435 26.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.042 3.958 3 C -0.213 4.213 4 N -0.155 5.155 5 C -0.090 4.090 6 C -0.310 4.310 7 C -0.103 4.103 8 C -0.092 4.092 9 C 0.301 3.699 10 O -0.453 6.453 11 N -0.363 5.363 12 C -0.005 4.005 13 C 0.222 3.778 14 O -0.509 6.509 15 N -0.197 5.197 16 C -0.466 4.466 17 H 0.106 0.894 18 C -0.213 4.213 19 N -0.558 5.558 20 Si 0.822 3.178 21 H -0.195 1.195 22 H -0.197 1.197 23 H -0.194 1.194 24 N -0.142 5.142 25 H 0.062 0.938 26 H 0.118 0.882 27 H 0.091 0.909 28 H 0.101 0.899 29 H 0.102 0.898 30 H 0.122 0.878 31 H 0.070 0.930 32 H 0.225 0.775 33 H 0.187 0.813 34 H 0.145 0.855 35 H 0.165 0.835 36 H 0.255 0.745 37 H 0.108 0.892 38 H 0.105 0.895 39 H 0.232 0.768 40 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -16.726 20.676 -0.961 26.612 hybrid contribution 0.871 -0.737 -0.615 1.296 sum -15.855 19.939 -1.576 25.523 Atomic orbital electron populations 1.22172 0.92189 1.02342 1.04531 1.21541 0.95853 0.93737 0.84716 1.22163 1.01448 0.92263 1.05441 1.49148 1.50088 1.06675 1.09609 1.23007 1.00108 1.01176 0.84735 1.21696 1.14821 0.91730 1.02763 1.21890 1.00040 0.96690 0.91690 1.20102 0.96033 0.92520 1.00569 1.21029 0.84046 0.79902 0.84905 1.90703 1.65635 1.57272 1.31716 1.45686 1.34345 1.22082 1.34168 1.20708 0.91094 0.93116 0.95604 1.20394 0.83174 0.88188 0.86083 1.90466 1.60191 1.69586 1.30685 1.41870 1.29477 1.19328 1.28989 1.19758 1.15625 0.97054 1.14145 0.89422 1.26168 0.95993 1.03316 0.95849 1.69685 1.24154 1.41033 1.20930 0.84842 0.78442 0.76612 0.77929 1.19462 1.19713 1.19351 1.77342 1.21253 0.95061 1.20524 0.93843 0.88204 0.90935 0.89933 0.89791 0.87838 0.92966 0.77520 0.81278 0.85456 0.83538 0.74529 0.89171 0.89518 0.76809 0.91084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.83 9.52 71.98 0.69 -1.14 16 2 C 0.14 2.31 3.93 44.99 0.18 2.49 16 3 C -0.16 -1.48 8.84 71.98 0.64 -0.84 16 4 N -0.37 -8.62 3.52 -327.49 -1.15 -9.77 16 5 C 0.06 1.02 10.59 83.54 0.89 1.90 16 6 C -0.28 -5.91 10.72 21.99 0.24 -5.68 16 7 C 0.06 1.72 6.01 43.10 0.26 1.98 16 8 C -0.05 -1.20 6.28 29.10 0.18 -1.02 16 9 C 0.51 16.85 7.82 87.65 0.69 17.53 16 10 O -0.57 -23.67 15.56 -3.02 -0.05 -23.72 16 11 N -0.71 -23.76 5.53 -466.79 -2.58 -26.34 16 12 C 0.12 4.70 6.15 85.63 0.53 5.23 16 13 C 0.43 20.49 7.85 87.66 0.69 21.17 16 14 O -0.62 -32.31 15.24 -3.07 -0.05 -32.36 16 15 N -0.56 -28.82 5.29 -306.98 -1.62 -30.44 16 16 C -0.34 -18.78 9.68 84.04 0.81 -17.96 16 17 H 0.09 5.11 7.16 -2.91 -0.02 5.09 16 18 C -0.01 -0.68 5.50 84.93 0.47 -0.21 16 19 N -0.92 -49.58 13.05 21.66 0.28 -49.30 16 20 Si 1.00 42.17 29.55 68.60 2.03 44.20 16 21 H -0.27 -11.01 7.11 99.48 0.71 -10.30 16 22 H -0.27 -10.97 7.11 99.48 0.71 -10.26 16 23 H -0.27 -11.28 7.11 99.48 0.71 -10.58 16 24 N -0.32 -10.06 11.92 -47.38 -0.56 -10.63 16 25 H 0.04 0.71 8.14 -2.39 -0.02 0.69 16 26 H 0.10 0.68 8.14 -2.39 -0.02 0.67 16 27 H 0.07 0.70 8.14 -2.39 -0.02 0.69 16 28 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 29 H 0.08 0.49 7.16 -2.39 -0.02 0.48 16 30 H 0.10 0.53 8.14 -2.39 -0.02 0.51 16 31 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 32 H 0.21 1.84 7.27 -2.91 -0.02 1.82 16 33 H 0.17 2.54 8.06 -2.91 -0.02 2.51 16 34 H 0.13 2.50 8.14 -2.39 -0.02 2.48 16 35 H 0.15 2.38 8.12 -2.38 -0.02 2.36 16 36 H 0.42 13.18 7.44 -92.70 -0.69 12.49 16 37 H 0.09 3.33 8.14 -2.39 -0.02 3.32 16 38 H 0.09 3.27 8.14 -2.39 -0.02 3.25 16 39 H 0.40 19.77 7.90 -92.71 -0.73 19.04 16 40 H 0.28 14.11 8.31 -92.71 -0.77 13.34 16 Total: -1.00 -77.22 348.57 2.19 -75.03 By element: Atomic # 1 Polarization: 40.21 SS G_CDS: -0.35 Total: 39.86 kcal Atomic # 6 Polarization: 17.21 SS G_CDS: 6.24 Total: 23.46 kcal Atomic # 7 Polarization: -120.83 SS G_CDS: -5.64 Total: -126.47 kcal Atomic # 8 Polarization: -55.98 SS G_CDS: -0.09 Total: -56.07 kcal Atomic # 14 Polarization: 42.17 SS G_CDS: 2.03 Total: 44.20 kcal Total: -77.22 2.19 -75.03 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001262336531.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.848 kcal (2) G-P(sol) polarization free energy of solvation -77.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.029 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds