Wall clock time and date at job start Tue Mar 31 2020 04:37:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 N 1.40085 * 126.04294 * 2 1 4 4 C 1.30829 * 108.20742 * 180.02562 * 3 2 1 5 5 C 1.39866 * 108.20769 * 359.78518 * 4 3 2 6 6 C 1.34951 * 126.03573 * 180.02562 * 2 1 3 7 7 C 1.50706 * 126.12666 * 359.93452 * 6 2 1 8 8 C 1.52999 * 109.46953 * 265.00625 * 7 6 2 9 9 N 1.46506 * 109.46684 * 180.02562 * 8 7 6 10 10 C 1.34777 * 119.99873 * 180.02562 * 9 8 7 11 11 O 1.21351 * 119.99901 * 359.97438 * 10 9 8 12 12 C 1.49446 * 119.99872 * 179.97438 * 10 9 8 13 13 O 1.21351 * 120.00227 * 359.97438 * 12 10 9 14 14 N 1.34777 * 119.99877 * 179.97438 * 12 10 9 15 15 C 1.46506 * 120.00271 * 179.97438 * 14 12 10 16 16 C 1.52999 * 109.47082 * 180.02562 * 15 14 12 17 17 C 1.50706 * 109.46576 * 180.02562 * 16 15 14 18 18 H 1.07999 * 120.00196 * 0.02562 * 17 16 15 19 19 C 1.37879 * 119.99394 * 180.02562 * 17 16 15 20 20 N 1.31514 * 120.00338 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 119.99426 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.47361 * 0.02562 * 21 19 17 23 23 H 1.48500 * 109.46969 * 120.00280 * 21 19 17 24 24 H 1.48500 * 109.47264 * 239.99885 * 21 19 17 25 25 H 1.09005 * 109.46895 * 269.97402 * 1 2 3 26 26 H 1.09000 * 109.46970 * 29.96774 * 1 2 3 27 27 H 1.08993 * 109.47665 * 149.96968 * 1 2 3 28 28 H 1.08008 * 125.89760 * 180.02562 * 4 3 2 29 29 H 1.08002 * 126.04924 * 180.23038 * 5 4 3 30 30 H 1.09000 * 109.46974 * 145.00373 * 7 6 2 31 31 H 1.09001 * 109.46547 * 25.00463 * 7 6 2 32 32 H 1.09000 * 109.47486 * 60.00062 * 8 7 6 33 33 H 1.09001 * 109.47362 * 299.99339 * 8 7 6 34 34 H 0.96995 * 120.00050 * 359.72237 * 9 8 7 35 35 H 0.96999 * 120.00043 * 0.02562 * 14 12 10 36 36 H 1.08993 * 109.46869 * 300.00757 * 15 14 12 37 37 H 1.09000 * 109.46679 * 60.00307 * 15 14 12 38 38 H 1.08988 * 109.47406 * 299.99941 * 16 15 14 39 39 H 1.08996 * 109.46724 * 60.00713 * 16 15 14 40 40 H 0.96996 * 119.99725 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2892 1.1327 0.0000 4 6 3.5346 0.7320 -0.0006 5 6 3.5437 -0.6666 0.0041 6 6 2.2589 -1.0913 -0.0005 7 6 1.7972 -2.5259 0.0003 8 6 1.7619 -3.0495 1.4374 9 7 1.3137 -4.4443 1.4380 10 6 1.2046 -5.1165 2.6011 11 8 1.4782 -4.5666 3.6477 12 6 0.7469 -6.5392 2.6018 13 8 0.4729 -7.0890 1.5552 14 7 0.6384 -7.2116 3.7647 15 6 0.1891 -8.6061 3.7656 16 6 0.1534 -9.1295 5.2028 17 6 -0.3082 -10.5642 5.2034 18 1 -0.5513 -11.0537 4.2719 19 6 -0.4201 -11.2517 6.3933 20 7 -0.1246 -10.6554 7.5276 21 14 -0.9929 -13.0297 6.3942 22 1 -1.2607 -13.4642 4.9996 23 1 0.0633 -13.8897 6.9859 24 1 -2.2360 -13.1489 7.1977 25 1 -0.3633 -0.0005 1.0277 26 1 -0.3633 0.8903 -0.5133 27 1 -0.3634 -0.8896 -0.5143 28 1 4.4055 1.3709 -0.0003 29 1 4.4210 -1.2965 0.0083 30 1 2.4868 -3.1298 -0.5896 31 1 0.7989 -2.5865 -0.4332 32 1 1.0723 -2.4456 2.0273 33 1 2.7601 -2.9889 1.8709 34 1 1.0912 -4.8826 0.6018 35 1 0.8570 -6.7720 4.6013 36 1 -0.8092 -8.6663 3.3323 37 1 0.8784 -9.2101 3.1755 38 1 1.1515 -9.0692 5.6364 39 1 -0.5361 -8.5254 5.7924 40 1 -0.2030 -11.1393 8.3646 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001325253565.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:37:48 Heat of formation + Delta-G solvation = -4.663017 kcal Electronic energy + Delta-G solvation = -22019.964977 eV Core-core repulsion = 18450.329080 eV Total energy + Delta-G solvation = -3569.635897 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.148 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.63393 -40.45278 -38.39430 -36.12253 -35.04105 -33.70524 -32.91869 -32.46384 -29.86262 -28.86176 -27.11449 -25.87460 -24.38075 -22.70940 -21.52141 -21.09260 -20.55932 -19.87562 -18.34838 -17.24801 -16.73884 -16.31911 -16.11965 -15.94419 -15.29322 -15.20842 -14.81746 -14.64743 -14.45709 -14.22670 -13.80974 -13.50986 -13.20350 -13.03995 -12.87463 -12.76767 -12.50228 -12.34945 -11.90592 -11.56808 -11.25683 -11.09692 -10.99382 -10.67111 -10.43528 -9.83713 -9.68008 -9.47951 -9.47681 -9.22877 -8.89773 -8.73690 -8.44516 -6.12343 -4.16063 1.42716 1.54943 2.10561 2.40447 2.54380 3.26403 3.34149 3.37014 3.38463 3.75339 4.15523 4.21996 4.36587 4.37623 4.40868 4.71326 4.72563 4.79102 4.93819 5.03644 5.17495 5.24651 5.36764 5.38858 5.47091 5.78020 5.97825 6.14585 6.20597 6.28834 6.55339 6.59240 6.65737 6.95184 7.33490 7.43333 7.55207 7.60796 7.84882 7.86419 8.17632 8.29874 8.89831 9.49022 10.99147 Molecular weight = 294.15amu Principal moments of inertia in cm(-1) A = 0.048122 B = 0.002026 C = 0.002009 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 581.716384 B =13816.482732 C =13931.973672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.096 3.904 2 N -0.370 5.370 3 N -0.297 5.297 4 C 0.047 3.953 5 C -0.265 4.265 6 C 0.087 3.913 7 C -0.070 4.070 8 C 0.125 3.875 9 N -0.708 5.708 10 C 0.509 3.491 11 O -0.517 6.517 12 C 0.498 3.502 13 O -0.534 6.534 14 N -0.685 5.685 15 C 0.118 3.882 16 C 0.010 3.990 17 C -0.523 4.523 18 H 0.061 0.939 19 C 0.059 3.941 20 N -0.892 5.892 21 Si 0.898 3.102 22 H -0.271 1.271 23 H -0.283 1.283 24 H -0.283 1.283 25 H 0.077 0.923 26 H 0.090 0.910 27 H 0.088 0.912 28 H 0.184 0.816 29 H 0.149 0.851 30 H 0.102 0.898 31 H 0.085 0.915 32 H 0.072 0.928 33 H 0.081 0.919 34 H 0.413 0.587 35 H 0.411 0.589 36 H 0.063 0.937 37 H 0.064 0.936 38 H 0.025 0.975 39 H 0.025 0.975 40 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.229 20.612 -16.424 26.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 N -0.153 5.153 3 N -0.118 5.118 4 C -0.139 4.139 5 C -0.295 4.295 6 C -0.042 4.042 7 C -0.109 4.109 8 C 0.001 3.999 9 N -0.363 5.363 10 C 0.290 3.710 11 O -0.392 6.392 12 C 0.277 3.723 13 O -0.412 6.412 14 N -0.336 5.336 15 C -0.003 4.003 16 C -0.027 4.027 17 C -0.562 4.562 18 H 0.079 0.921 19 C -0.143 4.143 20 N -0.530 5.530 21 Si 0.726 3.274 22 H -0.196 1.196 23 H -0.209 1.209 24 H -0.209 1.209 25 H 0.096 0.904 26 H 0.109 0.891 27 H 0.106 0.894 28 H 0.201 0.799 29 H 0.167 0.833 30 H 0.120 0.880 31 H 0.103 0.897 32 H 0.090 0.910 33 H 0.099 0.901 34 H 0.250 0.750 35 H 0.246 0.754 36 H 0.082 0.918 37 H 0.082 0.918 38 H 0.044 0.956 39 H 0.044 0.956 40 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 3.282 21.586 -16.195 27.185 hybrid contribution 0.248 -1.560 0.160 1.588 sum 3.531 20.026 -16.035 25.896 Atomic orbital electron populations 1.21908 0.74304 1.04576 1.03760 1.48532 1.06609 1.03365 1.56793 1.77395 1.01955 1.07781 1.24695 1.23862 0.95240 0.95110 0.99669 1.21312 0.96280 0.95163 1.16734 1.20724 0.91430 0.89701 1.02309 1.20426 1.03474 0.89549 0.97484 1.21332 1.01605 0.81162 0.95786 1.45687 1.67674 1.13082 1.09822 1.20471 0.78595 0.87888 0.84066 1.90776 1.47705 1.69503 1.31191 1.19930 0.80376 0.86685 0.85311 1.90731 1.49858 1.69374 1.31225 1.46247 1.63848 1.15040 1.08461 1.21947 0.98921 0.77214 1.02220 1.19366 0.98282 0.96585 0.88501 1.21049 1.45589 0.96305 0.93228 0.92092 1.25012 0.95230 0.98603 0.95502 1.69967 1.48339 1.36968 0.97754 0.86439 0.78359 0.84422 0.78224 1.19579 1.20917 1.20924 0.90419 0.89124 0.89362 0.79879 0.83279 0.87963 0.89668 0.90993 0.90116 0.75018 0.75353 0.91832 0.91799 0.95631 0.95649 0.92807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.50 11.27 59.84 0.67 1.18 16 2 N -0.37 -3.20 4.01 -63.88 -0.26 -3.46 16 3 N -0.30 -3.10 12.58 30.62 0.39 -2.72 16 4 C 0.05 0.40 12.02 -17.37 -0.21 0.19 16 5 C -0.27 -2.12 10.72 -40.01 -0.43 -2.55 16 6 C 0.09 0.68 6.19 -82.26 -0.51 0.17 16 7 C -0.07 -0.39 5.61 -27.88 -0.16 -0.55 16 8 C 0.13 1.01 5.66 -4.04 -0.02 0.99 16 9 N -0.71 -7.04 5.55 -60.73 -0.34 -7.37 16 10 C 0.51 7.13 7.89 -11.59 -0.09 7.03 16 11 O -0.52 -8.43 16.48 5.50 0.09 -8.34 16 12 C 0.50 8.15 7.89 -11.59 -0.09 8.06 16 13 O -0.53 -9.57 16.48 5.50 0.09 -9.48 16 14 N -0.69 -12.10 5.55 -60.73 -0.34 -12.44 16 15 C 0.12 2.42 5.61 -4.04 -0.02 2.40 16 16 C 0.01 0.25 5.09 -27.88 -0.14 0.10 16 17 C -0.52 -14.21 9.11 -34.44 -0.31 -14.53 16 18 H 0.06 1.61 7.74 -52.49 -0.41 1.20 16 19 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 20 N -0.89 -25.90 13.29 55.43 0.74 -25.17 16 21 Si 0.90 21.08 29.54 -169.99 -5.02 16.06 16 22 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 23 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 24 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 25 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 26 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.09 0.28 6.98 -51.93 -0.36 -0.08 16 28 H 0.18 0.99 8.06 -52.48 -0.42 0.57 16 29 H 0.15 0.92 8.06 -52.49 -0.42 0.50 16 30 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.08 0.35 6.95 -51.93 -0.36 -0.01 16 32 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.41 3.46 7.94 -40.82 -0.32 3.14 16 35 H 0.41 6.95 7.94 -40.82 -0.32 6.62 16 36 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 37 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 38 H 0.03 0.65 8.14 -51.94 -0.42 0.23 16 39 H 0.03 0.65 8.14 -51.93 -0.42 0.22 16 40 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 LS Contribution 352.56 15.07 5.31 5.31 Total: -1.00 -33.98 352.56 -6.31 -40.29 By element: Atomic # 1 Polarization: 8.86 SS G_CDS: -5.56 Total: 3.29 kcal Atomic # 6 Polarization: 5.43 SS G_CDS: -1.41 Total: 4.02 kcal Atomic # 7 Polarization: -51.35 SS G_CDS: 0.19 Total: -51.16 kcal Atomic # 8 Polarization: -18.00 SS G_CDS: 0.18 Total: -17.82 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -33.98 -6.31 -40.29 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325253565.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.625 kcal (2) G-P(sol) polarization free energy of solvation -33.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.288 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds