Wall clock time and date at job start Tue Mar 31 2020 04:40:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.34942 * 126.03870 * 2 1 4 4 C 1.35311 * 107.75008 * 180.02562 * 3 2 1 5 5 C 1.50699 * 126.04358 * 179.97438 * 4 3 2 6 6 N 1.46502 * 109.46998 * 90.00062 * 5 4 3 7 7 C 1.34778 * 120.00094 * 180.02562 * 6 5 4 8 8 O 1.21587 * 120.00083 * 0.02562 * 7 6 5 9 9 N 1.34783 * 120.00138 * 179.97438 * 7 6 5 10 10 C 1.47028 * 125.64488 * 359.97438 * 9 7 6 11 11 C 1.54320 * 107.26701 * 178.99212 * 10 9 7 12 12 C 1.55153 * 102.94383 * 337.80525 * 11 10 9 13 13 O 1.42895 * 111.00660 * 277.38826 * 12 11 10 14 14 C 1.50702 * 111.00367 * 153.57571 * 12 11 10 15 15 H 1.08002 * 120.00299 * 3.18452 * 14 12 11 16 16 C 1.37884 * 119.99942 * 182.90010 * 14 12 11 17 17 N 1.31514 * 119.99698 * 0.28408 * 16 14 12 18 18 Si 1.86794 * 119.99837 * 180.27476 * 16 14 12 19 19 H 1.48501 * 109.47188 * 90.00793 * 18 16 14 20 20 H 1.48501 * 109.47085 * 210.00372 * 18 16 14 21 21 H 1.48498 * 109.47634 * 330.00608 * 18 16 14 22 22 C 1.47463 * 125.62945 * 179.97438 * 9 7 6 23 23 C 1.39872 * 107.92215 * 0.26094 * 4 3 2 24 24 N 1.30844 * 108.19680 * 359.55753 * 23 4 3 25 25 H 1.08996 * 109.47439 * 90.00348 * 1 2 3 26 26 H 1.09007 * 109.47044 * 210.00159 * 1 2 3 27 27 H 1.09001 * 109.47186 * 329.99450 * 1 2 3 28 28 H 1.08003 * 126.12905 * 0.02562 * 3 2 1 29 29 H 1.09002 * 109.47451 * 330.00061 * 5 4 3 30 30 H 1.08998 * 109.47395 * 209.99850 * 5 4 3 31 31 H 0.96998 * 120.00213 * 359.97438 * 6 5 4 32 32 H 1.09000 * 109.88086 * 59.57636 * 10 9 7 33 33 H 1.09003 * 109.87956 * 298.40624 * 10 9 7 34 34 H 1.09004 * 110.71836 * 219.43859 * 11 10 9 35 35 H 1.09006 * 110.72351 * 96.16930 * 11 10 9 36 36 H 0.96695 * 114.00567 * 176.81707 * 13 12 11 37 37 H 0.97005 * 119.99651 * 179.97438 * 17 16 14 38 38 H 1.08998 * 110.34826 * 85.23635 * 22 9 7 39 39 H 1.09002 * 110.40574 * 322.89852 * 22 9 7 40 40 H 1.08001 * 125.90535 * 179.73832 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2589 1.0912 0.0000 4 6 3.5436 0.6666 -0.0006 5 6 4.7679 1.5453 -0.0013 6 7 5.1653 1.8302 1.3797 7 6 6.2417 2.6033 1.6253 8 8 6.8826 3.0646 0.7008 9 7 6.6070 2.8659 2.8959 10 6 5.9241 2.3762 4.1024 11 6 6.7087 2.9077 5.3203 12 6 8.1138 3.1967 4.7294 13 8 8.9016 2.0058 4.6752 14 6 8.8193 4.2722 5.5147 15 1 8.3545 4.6910 6.3951 16 6 10.0608 4.7175 5.1126 17 7 10.6267 4.2076 4.0406 18 14 10.9385 6.0452 6.0904 19 1 11.7797 5.4135 7.1387 20 1 11.7985 6.8434 5.1802 21 1 9.9354 6.9341 6.7298 22 6 7.7578 3.6918 3.3055 23 6 3.5347 -0.7321 -0.0070 24 7 2.2891 -1.1328 -0.0006 25 1 -0.3634 -0.0001 -1.0276 26 1 -0.3633 -0.8900 0.5139 27 1 -0.3633 0.8899 0.5139 28 1 1.9281 2.1193 0.0004 29 1 4.5440 2.4801 -0.5152 30 1 5.5818 1.0340 -0.5154 31 1 4.6534 1.4631 2.1172 32 1 5.9213 1.2863 4.1101 33 1 4.9012 2.7520 4.1276 34 1 6.7673 2.1501 6.1018 35 1 6.2552 3.8226 5.7020 36 1 9.7703 2.1269 4.2683 37 1 11.5000 4.5211 3.7575 38 1 7.4790 4.7453 3.3290 39 1 8.5978 3.5358 2.6286 40 1 4.4054 -1.3710 -0.0130 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001328119159.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:40:24 Heat of formation + Delta-G solvation = -17.344428 kcal Electronic energy + Delta-G solvation = -23492.463449 eV Core-core repulsion = 19922.277644 eV Total energy + Delta-G solvation = -3570.185804 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.148 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.21605 -41.09443 -39.06530 -36.01618 -35.99875 -34.16000 -33.99047 -32.11621 -31.17167 -29.54204 -28.46463 -26.98195 -25.62232 -23.97797 -22.03810 -21.49252 -21.30659 -20.88249 -19.28368 -18.84250 -17.71615 -17.17823 -16.83232 -16.81095 -16.27692 -16.15630 -15.46831 -15.44577 -15.14516 -14.74584 -14.56562 -14.32826 -14.02461 -13.64265 -13.51040 -13.46797 -13.41956 -13.17173 -12.92973 -12.81556 -12.48712 -12.28173 -12.20187 -12.06110 -11.64107 -11.31547 -11.17758 -10.62595 -10.40781 -10.30156 -10.10049 -9.51479 -9.25523 -8.22010 -6.39086 0.87139 1.42992 1.45891 1.47864 1.56011 1.67023 2.08144 2.24045 2.41070 3.04050 3.27297 3.59480 3.84222 3.96399 4.11934 4.20039 4.24675 4.30761 4.38467 4.46828 4.50110 4.65907 4.73043 4.78428 4.80613 4.86156 5.09795 5.13526 5.16585 5.35069 5.42768 5.49158 5.56879 5.62070 5.79590 6.07834 6.08667 6.26078 6.67747 6.68348 7.14669 7.32632 7.39655 7.65384 8.83415 Molecular weight = 294.15amu Principal moments of inertia in cm(-1) A = 0.036243 B = 0.003038 C = 0.002970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 772.367566 B = 9213.581782 C = 9426.896536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.091 3.909 2 N -0.377 5.377 3 C 0.090 3.910 4 C -0.271 4.271 5 C 0.225 3.775 6 N -0.725 5.725 7 C 0.709 3.291 8 O -0.645 6.645 9 N -0.634 5.634 10 C 0.109 3.891 11 C -0.111 4.111 12 C 0.231 3.769 13 O -0.589 6.589 14 C -0.555 4.555 15 H 0.070 0.930 16 C 0.024 3.976 17 N -0.917 5.917 18 Si 0.965 3.035 19 H -0.275 1.275 20 H -0.287 1.287 21 H -0.264 1.264 22 C 0.128 3.872 23 C 0.058 3.942 24 N -0.331 5.331 25 H 0.087 0.913 26 H 0.090 0.910 27 H 0.116 0.884 28 H 0.207 0.793 29 H 0.068 0.932 30 H 0.058 0.942 31 H 0.405 0.595 32 H 0.068 0.932 33 H 0.089 0.911 34 H 0.083 0.917 35 H 0.090 0.910 36 H 0.374 0.626 37 H 0.269 0.731 38 H 0.041 0.959 39 H 0.040 0.960 40 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.904 -5.947 -5.024 22.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 N -0.158 5.158 3 C -0.059 4.059 4 C -0.283 4.283 5 C 0.101 3.899 6 N -0.382 5.382 7 C 0.411 3.589 8 O -0.528 6.528 9 N -0.371 5.371 10 C -0.013 4.013 11 C -0.148 4.148 12 C 0.190 3.810 13 O -0.397 6.397 14 C -0.593 4.593 15 H 0.088 0.912 16 C -0.177 4.177 17 N -0.556 5.556 18 Si 0.791 3.209 19 H -0.201 1.201 20 H -0.212 1.212 21 H -0.189 1.189 22 C 0.004 3.996 23 C -0.128 4.128 24 N -0.153 5.153 25 H 0.106 0.894 26 H 0.109 0.891 27 H 0.134 0.866 28 H 0.224 0.776 29 H 0.086 0.914 30 H 0.077 0.923 31 H 0.241 0.759 32 H 0.087 0.913 33 H 0.107 0.893 34 H 0.102 0.898 35 H 0.108 0.892 36 H 0.224 0.776 37 H 0.079 0.921 38 H 0.059 0.941 39 H 0.059 0.941 40 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges -21.859 -6.914 -5.600 23.601 hybrid contribution 1.903 1.419 0.201 2.382 sum -19.956 -5.495 -5.398 21.392 Atomic orbital electron populations 1.22240 0.71723 1.06098 1.04767 1.48882 1.08104 1.03319 1.55473 1.22878 0.90150 0.94709 0.98142 1.19939 0.94216 0.93723 1.20396 1.19149 0.92539 0.97089 0.81134 1.45166 1.29507 1.53724 1.09762 1.15774 0.81497 0.79850 0.81751 1.90844 1.58121 1.59765 1.44096 1.47866 1.31827 1.53362 1.04015 1.22068 0.96371 0.98973 0.83855 1.22596 0.93596 1.01939 0.96691 1.19877 0.88710 0.83129 0.89241 1.86066 1.32675 1.36429 1.84578 1.21819 1.03589 1.21393 1.12499 0.91179 1.25857 0.97989 0.98372 0.95454 1.69786 1.17093 1.44107 1.24635 0.85440 0.78376 0.78834 0.78278 1.20089 1.21239 1.18853 1.22654 0.85979 0.92389 0.98598 1.24100 0.95504 0.94943 0.98226 1.77360 1.02156 1.09702 1.26080 0.89407 0.89115 0.86578 0.77583 0.91382 0.92341 0.75937 0.91334 0.89272 0.89817 0.89178 0.77611 0.92146 0.94078 0.94149 0.79110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.63 11.47 127.77 1.47 2.09 16 2 N -0.38 -6.06 4.01 -369.58 -1.48 -7.55 16 3 C 0.09 1.38 11.40 83.54 0.95 2.34 16 4 C -0.27 -5.43 5.47 -20.14 -0.11 -5.55 16 5 C 0.23 5.66 6.15 85.63 0.53 6.18 16 6 N -0.72 -21.17 5.51 -482.29 -2.66 -23.83 16 7 C 0.71 29.02 8.49 179.05 1.52 30.54 16 8 O -0.65 -32.32 16.60 -3.99 -0.07 -32.38 16 9 N -0.63 -26.28 3.33 -829.66 -2.76 -29.04 16 10 C 0.11 3.57 6.15 86.73 0.53 4.11 16 11 C -0.11 -4.16 6.13 31.78 0.19 -3.96 16 12 C 0.23 11.25 0.88 -10.15 -0.01 11.24 16 13 O -0.59 -30.84 13.17 -148.98 -1.96 -32.80 16 14 C -0.55 -28.89 8.25 25.60 0.21 -28.68 16 15 H 0.07 3.51 7.78 -2.91 -0.02 3.48 16 16 C 0.02 1.26 5.29 84.66 0.45 1.71 16 17 N -0.92 -50.65 10.69 21.45 0.23 -50.42 16 18 Si 0.97 41.92 29.54 68.60 2.03 43.95 16 19 H -0.28 -11.74 7.11 99.48 0.71 -11.03 16 20 H -0.29 -12.44 7.11 99.48 0.71 -11.74 16 21 H -0.26 -11.02 7.11 99.48 0.71 -10.31 16 22 C 0.13 6.38 5.51 86.84 0.48 6.86 16 23 C 0.06 1.24 11.96 85.24 1.02 2.26 16 24 N -0.33 -7.35 12.58 -57.02 -0.72 -8.06 16 25 H 0.09 0.41 8.14 -2.39 -0.02 0.39 16 26 H 0.09 0.63 8.14 -2.38 -0.02 0.61 16 27 H 0.12 0.16 8.14 -2.39 -0.02 0.14 16 28 H 0.21 1.74 8.06 -2.91 -0.02 1.72 16 29 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 30 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 31 H 0.40 9.90 7.45 -92.71 -0.69 9.21 16 32 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 33 H 0.09 2.24 8.14 -2.39 -0.02 2.22 16 34 H 0.08 2.97 8.14 -2.38 -0.02 2.95 16 35 H 0.09 3.12 8.03 -2.38 -0.02 3.10 16 36 H 0.37 20.72 7.24 -74.06 -0.54 20.19 16 37 H 0.27 14.28 8.31 -92.70 -0.77 13.51 16 38 H 0.04 2.12 8.03 -2.39 -0.02 2.10 16 39 H 0.04 2.33 7.48 -2.39 -0.02 2.32 16 40 H 0.19 3.49 8.06 -2.91 -0.02 3.46 16 Total: -1.00 -73.02 339.47 -0.32 -73.33 By element: Atomic # 1 Polarization: 37.82 SS G_CDS: -0.16 Total: 37.67 kcal Atomic # 6 Polarization: 21.91 SS G_CDS: 7.23 Total: 29.14 kcal Atomic # 7 Polarization: -111.52 SS G_CDS: -7.39 Total: -118.91 kcal Atomic # 8 Polarization: -63.15 SS G_CDS: -2.03 Total: -65.18 kcal Atomic # 14 Polarization: 41.92 SS G_CDS: 2.03 Total: 43.95 kcal Total: -73.02 -0.32 -73.33 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328119159.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.990 kcal (2) G-P(sol) polarization free energy of solvation -73.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.334 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds