Wall clock time and date at job start Tue Mar 31 2020 04:10:18
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52994 * 1
3 3 H 1.09006 * 109.47190 * 2 1
4 4 C 1.52991 * 109.47423 * 239.99662 * 2 1 3
5 5 N 1.46505 * 109.47488 * 185.00229 * 4 2 1
6 6 C 1.34779 * 120.00304 * 179.97438 * 5 4 2
7 7 O 1.21462 * 119.99612 * 0.02562 * 6 5 4
8 8 C 1.48552 * 120.00142 * 180.02562 * 6 5 4
9 9 C 1.37917 * 120.21189 * 180.02562 * 8 6 5
10 10 C 1.41611 * 118.33509 * 180.02562 * 9 8 6
11 11 O 1.21907 * 120.71724 * 179.97438 * 10 9 8
12 12 N 1.34990 * 118.57107 * 359.97438 * 10 9 8
13 13 C 1.46494 * 119.89360 * 179.97438 * 12 10 9
14 14 C 1.34777 * 120.21178 * 0.25515 * 12 10 9
15 15 N 1.30434 * 121.82408 * 359.47094 * 14 12 10
16 16 N 1.46501 * 109.46670 * 119.99807 * 2 1 3
17 17 C 1.46497 * 120.00061 * 60.00227 * 16 2 1
18 18 C 1.36943 * 119.99782 * 239.99664 * 16 2 1
19 19 H 1.07998 * 119.99970 * 21.95017 * 18 16 2
20 20 C 1.38819 * 119.99809 * 201.94109 * 18 16 2
21 21 N 1.31622 * 120.00011 * 12.69655 * 20 18 16
22 22 Si 1.86796 * 119.99882 * 192.69130 * 20 18 16
23 23 H 1.48497 * 109.47355 * 90.00217 * 22 20 18
24 24 H 1.48496 * 109.47066 * 210.00333 * 22 20 18
25 25 H 1.48502 * 109.47085 * 330.00210 * 22 20 18
26 26 H 1.09001 * 109.46904 * 59.99911 * 1 2 3
27 27 H 1.08993 * 109.47448 * 180.02562 * 1 2 3
28 28 H 1.09001 * 109.47308 * 300.00444 * 1 2 3
29 29 H 1.09008 * 109.47253 * 65.00156 * 4 2 1
30 30 H 1.09005 * 109.47462 * 305.00378 * 4 2 1
31 31 H 0.96994 * 119.99625 * 0.02562 * 5 4 2
32 32 H 1.08009 * 120.83609 * 359.97438 * 9 8 6
33 33 H 1.09008 * 109.47005 * 90.00104 * 13 12 10
34 34 H 1.09000 * 109.47117 * 330.00489 * 13 12 10
35 35 H 1.08999 * 109.47521 * 210.00175 * 13 12 10
36 36 H 1.08002 * 119.08792 * 179.71788 * 14 12 10
37 37 H 1.09001 * 109.47127 * 94.31596 * 17 16 2
38 38 H 1.09004 * 109.47043 * 214.31278 * 17 16 2
39 39 H 1.09002 * 109.47270 * 334.31239 * 17 16 2
40 40 H 0.96995 * 119.99612 * 179.97438 * 21 20 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 1 1.8933 1.0277 0.0000
4 6 2.0400 -0.7213 -1.2491
5 7 3.5001 -0.8264 -1.1904
6 6 4.1731 -1.4293 -2.1905
7 8 3.5691 -1.8850 -3.1406
8 6 5.6535 -1.5365 -2.1307
9 6 6.3466 -2.1520 -3.1518
10 6 7.7570 -2.2326 -3.0538
11 8 8.4127 -2.7677 -3.9312
12 7 8.3599 -1.7040 -1.9677
13 6 9.8174 -1.7717 -1.8363
14 6 7.6248 -1.1193 -1.0012
15 7 6.3257 -1.0340 -1.0818
16 7 2.0182 -0.6906 1.1962
17 6 1.6642 -2.0931 1.4281
18 6 2.8055 -0.0250 2.0976
19 1 2.7846 1.0539 2.1396
20 6 3.6303 -0.7373 2.9575
21 7 3.8493 -2.0183 2.7488
22 14 4.4294 0.1223 4.4107
23 1 3.5351 0.0312 5.5927
24 1 5.7266 -0.5309 4.7200
25 1 4.6618 1.5500 4.0747
26 1 -0.3633 0.5139 -0.8900
27 1 -0.3634 -1.0276 0.0005
28 1 -0.3634 0.5139 0.8899
29 1 1.7517 -0.1584 -2.1369
30 1 1.6054 -1.7199 -1.2951
31 1 3.9823 -0.4629 -0.4314
32 1 5.8267 -2.5631 -4.0047
33 1 10.2646 -0.8871 -2.2899
34 1 10.1866 -2.6647 -2.3407
35 1 10.0855 -1.8137 -0.7807
36 1 8.1255 -0.7064 -0.1380
37 1 2.4538 -2.7362 1.0391
38 1 1.5485 -2.2666 2.4980
39 1 0.7272 -2.3202 0.9197
40 1 4.4259 -2.5158 3.3495
RHF calculation, no. of doubly occupied orbitals= 55
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001485312341.mol2 40
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 04:10:18
Heat of formation + Delta-G solvation = 2.826483 kcal
Electronic energy + Delta-G solvation = -24101.582613 eV
Core-core repulsion = 20532.271485 eV
Total energy + Delta-G solvation = -3569.311128 eV
No. of doubly occupied orbitals = 55
Molecular weight
(most abundant/longest-lived isotopes) = 294.148 amu
Computer time = 0.70 seconds
Orbital eigenvalues (eV)
-41.77439 -39.25009 -37.57303 -36.73688 -35.23382 -33.72520 -32.01980 -30.99173
-29.36655 -28.41401 -26.11440 -25.99423 -24.56576 -23.87690 -22.93309 -20.38004
-19.38300 -18.48117 -17.67181 -17.07012 -16.91553 -16.48708 -15.68703 -15.47722
-15.23966 -14.64800 -14.44658 -14.01481 -13.87833 -13.48846 -13.29381 -12.96119
-12.90715 -12.73238 -12.64437 -12.19443 -12.08802 -11.61479 -11.10432 -10.82957
-10.71609 -10.54081 -10.44256 -10.40513 -10.30308 -10.20106 -9.85871 -9.79542
-9.58263 -8.60846 -8.58103 -8.39507 -6.81745 -5.74577 -3.21371 0.32329
1.67947 2.31324 2.97401 3.33833 3.41233 3.41745 3.47119 3.85546
3.97830 4.42874 4.45201 4.54119 4.88003 4.95152 5.22460 5.29922
5.38104 5.38654 5.46203 5.59530 5.69208 5.94374 6.07602 6.11648
6.18714 6.32830 6.38143 6.42848 6.68476 6.79514 6.88513 7.04353
7.39466 7.61932 7.68581 7.72880 7.79479 8.16415 8.35157 8.66795
9.20010 9.83160 10.32440 11.28750
Molecular weight = 294.15amu
Principal moments of inertia in cm(-1)
A = 0.013861 B = 0.005462 C = 0.004161
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2019.632178 B = 5125.206718 C = 6726.728337
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.158 4.158
2 C 0.158 3.842
3 H 0.070 0.930
4 C 0.103 3.897
5 N -0.671 5.671
6 C 0.559 3.441
7 O -0.546 6.546
8 C 0.144 3.856
9 C -0.226 4.226
10 C 0.519 3.481
11 O -0.538 6.538
12 N -0.526 5.526
13 C 0.057 3.943
14 C 0.372 3.628
15 N -0.505 5.505
16 N -0.594 5.594
17 C 0.164 3.836
18 C -0.260 4.260
19 H 0.068 0.932
20 C 0.009 3.991
21 N -0.899 5.899
22 Si 0.902 3.098
23 H -0.291 1.291
24 H -0.293 1.293
25 H -0.280 1.280
26 H 0.046 0.954
27 H 0.052 0.948
28 H 0.057 0.943
29 H 0.057 0.943
30 H 0.061 0.939
31 H 0.427 0.573
32 H 0.167 0.833
33 H 0.080 0.920
34 H 0.094 0.906
35 H 0.092 0.908
36 H 0.210 0.790
37 H 0.028 0.972
38 H 0.042 0.958
39 H -0.002 1.002
40 H 0.251 0.749
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 7.300 3.419 -5.486 9.751
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.218 4.218
2 C 0.049 3.951
3 H 0.088 0.912
4 C -0.023 4.023
5 N -0.321 5.321
6 C 0.342 3.658
7 O -0.425 6.425
8 C 0.022 3.978
9 C -0.252 4.252
10 C 0.318 3.682
11 O -0.416 6.416
12 N -0.245 5.245
13 C -0.085 4.085
14 C 0.087 3.913
15 N -0.227 5.227
16 N -0.317 5.317
17 C 0.019 3.981
18 C -0.389 4.389
19 H 0.086 0.914
20 C -0.190 4.190
21 N -0.543 5.543
22 Si 0.732 3.268
23 H -0.218 1.218
24 H -0.219 1.219
25 H -0.206 1.206
26 H 0.065 0.935
27 H 0.071 0.929
28 H 0.076 0.924
29 H 0.075 0.925
30 H 0.080 0.920
31 H 0.267 0.733
32 H 0.185 0.815
33 H 0.099 0.901
34 H 0.113 0.887
35 H 0.111 0.889
36 H 0.226 0.774
37 H 0.046 0.954
38 H 0.061 0.939
39 H 0.016 0.984
40 H 0.061 0.939
Dipole moment (debyes) X Y Z Total
from point charges 6.781 2.976 -6.073 9.577
hybrid contribution 1.177 0.063 0.792 1.420
sum 7.958 3.039 -5.282 10.023
Atomic orbital electron populations
1.22169 0.97395 1.01495 1.00698 1.20646 0.92656 0.95944 0.85842
0.91228 1.22087 0.79479 1.01358 0.99398 1.45775 1.08230 1.55526
1.22605 1.17793 0.84935 0.79582 0.83460 1.90739 1.68316 1.49266
1.34198 1.21591 0.95337 0.91651 0.89217 1.23383 0.92231 1.06394
1.03185 1.17298 0.89121 0.80077 0.81713 1.90920 1.66734 1.45238
1.38722 1.46719 1.10941 1.47268 1.19557 1.22212 0.76918 1.05100
1.04257 1.25020 0.87843 0.87348 0.91050 1.68433 1.05785 1.23962
1.24528 1.43957 1.57849 1.09675 1.20201 1.20751 0.93916 0.84462
0.98950 1.19195 1.16870 0.90916 1.11954 0.91444 1.24955 0.97860
0.96056 1.00162 1.70095 1.39428 1.07306 1.37475 0.86307 0.78493
0.78768 0.83183 1.21778 1.21930 1.20560 0.93537 0.92926 0.92367
0.92464 0.92028 0.73343 0.81537 0.90147 0.88715 0.88941 0.77413
0.95363 0.93909 0.98357 0.93887
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -2.54 9.18 37.15 0.34 -2.20 16
2 C 0.16 2.96 2.87 -67.94 -0.19 2.76 16
3 H 0.07 1.29 7.86 -51.93 -0.41 0.88 16
4 C 0.10 1.89 4.97 -4.04 -0.02 1.87 16
5 N -0.67 -13.09 5.38 -61.02 -0.33 -13.42 16
6 C 0.56 10.89 7.83 -12.00 -0.09 10.80 16
7 O -0.55 -11.62 16.37 5.40 0.09 -11.53 16
8 C 0.14 2.48 6.77 -82.64 -0.56 1.92 16
9 C -0.23 -3.68 9.67 -38.41 -0.37 -4.05 16
10 C 0.52 7.92 7.47 -14.88 -0.11 7.81 16
11 O -0.54 -9.46 16.77 5.00 0.08 -9.38 16
12 N -0.53 -5.97 2.97 -128.43 -0.38 -6.35 16
13 C 0.06 0.40 10.39 59.84 0.62 1.03 16
14 C 0.37 4.19 11.45 -90.67 -1.04 3.15 16
15 N -0.51 -7.89 9.64 -10.83 -0.10 -8.00 16
16 N -0.59 -13.48 2.29 -173.49 -0.40 -13.88 16
17 C 0.16 3.84 8.10 59.85 0.49 4.33 16
18 C -0.26 -6.45 9.33 -15.05 -0.14 -6.59 16
19 H 0.07 1.65 7.81 -52.49 -0.41 1.24 16
20 C 0.01 0.22 5.10 -17.43 -0.09 0.13 16
21 N -0.90 -24.14 10.63 55.49 0.59 -23.55 16
22 Si 0.90 20.30 29.57 -169.99 -5.03 15.28 16
23 H -0.29 -6.72 7.11 56.52 0.40 -6.31 16
24 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16
25 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16
26 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16
27 H 0.05 0.86 6.66 -51.93 -0.35 0.51 16
28 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16
29 H 0.06 0.96 8.14 -51.92 -0.42 0.54 16
30 H 0.06 1.21 7.84 -51.93 -0.41 0.80 16
31 H 0.43 8.89 7.26 -40.82 -0.30 8.59 16
32 H 0.17 2.74 7.68 -52.48 -0.40 2.34 16
33 H 0.08 0.45 8.14 -51.92 -0.42 0.03 16
34 H 0.09 0.78 7.44 -51.93 -0.39 0.39 16
35 H 0.09 0.36 8.00 -51.93 -0.42 -0.05 16
36 H 0.21 1.38 8.01 -52.49 -0.42 0.96 16
37 H 0.03 0.73 7.42 -51.93 -0.39 0.35 16
38 H 0.04 1.09 7.20 -51.93 -0.37 0.72 16
39 H 0.00 -0.04 6.43 -51.93 -0.33 -0.38 16
40 H 0.25 6.66 8.31 -40.82 -0.34 6.32 16
LS Contribution 338.57 15.07 5.10 5.10
Total: -1.00 -32.15 338.57 -6.96 -39.11
By element:
Atomic # 1 Polarization: 11.07 SS G_CDS: -5.41 Total: 5.66 kcal
Atomic # 6 Polarization: 22.13 SS G_CDS: -1.17 Total: 20.95 kcal
Atomic # 7 Polarization: -64.57 SS G_CDS: -0.62 Total: -65.19 kcal
Atomic # 8 Polarization: -21.08 SS G_CDS: 0.17 Total: -20.91 kcal
Atomic # 14 Polarization: 20.30 SS G_CDS: -5.03 Total: 15.28 kcal
Total LS contribution 5.10 Total: 5.10 kcal
Total: -32.15 -6.96 -39.11 kcal
The number of atoms in the molecule is 40
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001485312341.mol2 40
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 41.933 kcal
(2) G-P(sol) polarization free energy of solvation -32.151 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.782 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.956 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.107 kcal
(6) G-S(sol) free energy of system = (1) + (5) 2.826 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.70 seconds