Wall clock time and date at job start Tue Mar 31 2020 04:10:18
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52994 * 1
3 3 H 1.09006 * 109.47190 * 2 1
4 4 C 1.52991 * 109.47423 * 239.99662 * 2 1 3
5 5 N 1.46505 * 109.47488 * 185.00229 * 4 2 1
6 6 C 1.34779 * 120.00304 * 179.97438 * 5 4 2
7 7 O 1.21462 * 119.99612 * 0.02562 * 6 5 4
8 8 C 1.48552 * 120.00142 * 180.02562 * 6 5 4
9 9 C 1.37917 * 120.21189 * 180.02562 * 8 6 5
10 10 C 1.41611 * 118.33509 * 180.02562 * 9 8 6
11 11 O 1.21907 * 120.71724 * 179.97438 * 10 9 8
12 12 N 1.34990 * 118.57107 * 359.97438 * 10 9 8
13 13 C 1.46494 * 119.89360 * 179.97438 * 12 10 9
14 14 C 1.34777 * 120.21178 * 0.25515 * 12 10 9
15 15 N 1.30434 * 121.82408 * 359.47094 * 14 12 10
16 16 N 1.46501 * 109.46670 * 119.99807 * 2 1 3
17 17 C 1.46497 * 120.00061 * 60.00227 * 16 2 1
18 18 C 1.36943 * 119.99782 * 239.99664 * 16 2 1
19 19 H 1.07998 * 119.99970 * 21.95017 * 18 16 2
20 20 C 1.38819 * 119.99809 * 201.94109 * 18 16 2
21 21 N 1.31622 * 120.00011 * 12.69655 * 20 18 16
22 22 Si 1.86796 * 119.99882 * 192.69130 * 20 18 16
23 23 H 1.48497 * 109.47355 * 90.00217 * 22 20 18
24 24 H 1.48496 * 109.47066 * 210.00333 * 22 20 18
25 25 H 1.48502 * 109.47085 * 330.00210 * 22 20 18
26 26 H 1.09001 * 109.46904 * 59.99911 * 1 2 3
27 27 H 1.08993 * 109.47448 * 180.02562 * 1 2 3
28 28 H 1.09001 * 109.47308 * 300.00444 * 1 2 3
29 29 H 1.09008 * 109.47253 * 65.00156 * 4 2 1
30 30 H 1.09005 * 109.47462 * 305.00378 * 4 2 1
31 31 H 0.96994 * 119.99625 * 0.02562 * 5 4 2
32 32 H 1.08009 * 120.83609 * 359.97438 * 9 8 6
33 33 H 1.09008 * 109.47005 * 90.00104 * 13 12 10
34 34 H 1.09000 * 109.47117 * 330.00489 * 13 12 10
35 35 H 1.08999 * 109.47521 * 210.00175 * 13 12 10
36 36 H 1.08002 * 119.08792 * 179.71788 * 14 12 10
37 37 H 1.09001 * 109.47127 * 94.31596 * 17 16 2
38 38 H 1.09004 * 109.47043 * 214.31278 * 17 16 2
39 39 H 1.09002 * 109.47270 * 334.31239 * 17 16 2
40 40 H 0.96995 * 119.99612 * 179.97438 * 21 20 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 1 1.8933 1.0277 0.0000
4 6 2.0400 -0.7213 -1.2491
5 7 3.5001 -0.8264 -1.1904
6 6 4.1731 -1.4293 -2.1905
7 8 3.5691 -1.8850 -3.1406
8 6 5.6535 -1.5365 -2.1307
9 6 6.3466 -2.1520 -3.1518
10 6 7.7570 -2.2326 -3.0538
11 8 8.4127 -2.7677 -3.9312
12 7 8.3599 -1.7040 -1.9677
13 6 9.8174 -1.7717 -1.8363
14 6 7.6248 -1.1193 -1.0012
15 7 6.3257 -1.0340 -1.0818
16 7 2.0182 -0.6906 1.1962
17 6 1.6642 -2.0931 1.4281
18 6 2.8055 -0.0250 2.0976
19 1 2.7846 1.0539 2.1396
20 6 3.6303 -0.7373 2.9575
21 7 3.8493 -2.0183 2.7488
22 14 4.4294 0.1223 4.4107
23 1 3.5351 0.0312 5.5927
24 1 5.7266 -0.5309 4.7200
25 1 4.6618 1.5500 4.0747
26 1 -0.3633 0.5139 -0.8900
27 1 -0.3634 -1.0276 0.0005
28 1 -0.3634 0.5139 0.8899
29 1 1.7517 -0.1584 -2.1369
30 1 1.6054 -1.7199 -1.2951
31 1 3.9823 -0.4629 -0.4314
32 1 5.8267 -2.5631 -4.0047
33 1 10.2646 -0.8871 -2.2899
34 1 10.1866 -2.6647 -2.3407
35 1 10.0855 -1.8137 -0.7807
36 1 8.1255 -0.7064 -0.1380
37 1 2.4538 -2.7362 1.0391
38 1 1.5485 -2.2666 2.4980
39 1 0.7272 -2.3202 0.9197
40 1 4.4259 -2.5158 3.3495
RHF calculation, no. of doubly occupied orbitals= 55
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001485312341.mol2 40
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 04:10:18
Heat of formation + Delta-G solvation = -18.643920 kcal
Electronic energy + Delta-G solvation = -24102.513640 eV
Core-core repulsion = 20532.271485 eV
Total energy + Delta-G solvation = -3570.242155 eV
No. of doubly occupied orbitals = 55
Molecular weight
(most abundant/longest-lived isotopes) = 294.148 amu
Computer time = 0.74 seconds
Orbital eigenvalues (eV)
-42.88436 -40.74340 -38.81186 -38.36695 -36.31349 -35.40676 -33.71105 -32.19138
-31.08834 -29.37134 -27.93833 -27.32615 -25.63040 -25.20095 -24.61611 -21.77556
-20.98791 -19.69874 -18.93489 -18.74570 -18.09165 -17.52604 -17.09182 -16.97474
-16.82640 -16.24400 -15.64030 -15.55910 -15.33596 -14.63678 -14.59090 -14.40533
-14.29762 -14.02063 -13.71971 -13.55942 -13.47331 -13.14978 -12.78280 -12.55909
-12.44084 -12.22519 -12.01492 -11.85686 -11.66610 -11.45209 -11.44263 -11.38570
-10.96929 -10.51492 -10.01253 -9.73799 -8.69829 -7.67245 -5.15723 -0.86614
0.53856 1.37336 1.55725 1.59797 1.60788 1.66051 2.07500 2.58941
2.61594 2.90437 3.33281 3.46935 3.65984 3.71461 3.93178 4.08442
4.11877 4.36359 4.42726 4.46566 4.53258 4.64847 4.72952 4.80009
4.83921 4.88453 5.12742 5.18785 5.30514 5.34498 5.35946 5.45263
5.60980 5.76654 5.81771 6.41442 6.44609 6.54080 6.71778 7.11835
7.27360 7.97960 8.43846 9.34615
Molecular weight = 294.15amu
Principal moments of inertia in cm(-1)
A = 0.013861 B = 0.005462 C = 0.004161
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2019.632178 B = 5125.206718 C = 6726.728337
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.149 4.149
2 C 0.157 3.843
3 H 0.075 0.925
4 C 0.107 3.893
5 N -0.673 5.673
6 C 0.554 3.446
7 O -0.572 6.572
8 C 0.144 3.856
9 C -0.242 4.242
10 C 0.517 3.483
11 O -0.568 6.568
12 N -0.516 5.516
13 C 0.050 3.950
14 C 0.394 3.606
15 N -0.541 5.541
16 N -0.602 5.602
17 C 0.183 3.817
18 C -0.260 4.260
19 H 0.073 0.927
20 C -0.038 4.038
21 N -0.927 5.927
22 Si 0.961 3.039
23 H -0.301 1.301
24 H -0.296 1.296
25 H -0.267 1.267
26 H 0.077 0.923
27 H 0.048 0.952
28 H 0.055 0.945
29 H 0.077 0.923
30 H 0.047 0.953
31 H 0.422 0.578
32 H 0.154 0.846
33 H 0.101 0.899
34 H 0.081 0.919
35 H 0.135 0.865
36 H 0.264 0.736
37 H -0.003 1.003
38 H 0.015 0.985
39 H 0.022 0.978
40 H 0.244 0.756
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 8.366 5.187 -4.670 10.895
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.208 4.208
2 C 0.050 3.950
3 H 0.093 0.907
4 C -0.019 4.019
5 N -0.322 5.322
6 C 0.338 3.662
7 O -0.453 6.453
8 C 0.021 3.979
9 C -0.269 4.269
10 C 0.316 3.684
11 O -0.449 6.449
12 N -0.231 5.231
13 C -0.090 4.090
14 C 0.111 3.889
15 N -0.264 5.264
16 N -0.326 5.326
17 C 0.038 3.962
18 C -0.390 4.390
19 H 0.090 0.910
20 C -0.234 4.234
21 N -0.573 5.573
22 Si 0.791 3.209
23 H -0.229 1.229
24 H -0.222 1.222
25 H -0.192 1.192
26 H 0.096 0.904
27 H 0.067 0.933
28 H 0.074 0.926
29 H 0.095 0.905
30 H 0.065 0.935
31 H 0.260 0.740
32 H 0.172 0.828
33 H 0.119 0.881
34 H 0.100 0.900
35 H 0.153 0.847
36 H 0.279 0.721
37 H 0.015 0.985
38 H 0.034 0.966
39 H 0.040 0.960
40 H 0.053 0.947
Dipole moment (debyes) X Y Z Total
from point charges 7.871 4.785 -5.254 10.605
hybrid contribution 0.863 -0.439 0.546 1.112
sum 8.734 4.346 -4.708 10.832
Atomic orbital electron populations
1.22058 0.94916 1.01689 1.02133 1.20841 0.94336 0.95614 0.84253
0.90655 1.22081 0.79036 1.00748 1.00040 1.45825 1.08600 1.55426
1.22309 1.18180 0.86157 0.78923 0.82947 1.90708 1.69289 1.50242
1.35037 1.21289 0.94206 0.92295 0.90095 1.23303 0.93268 1.07334
1.02996 1.17145 0.88609 0.80127 0.82471 1.90898 1.67161 1.46744
1.40089 1.46795 1.12909 1.45410 1.18031 1.22624 0.73711 1.05500
1.07196 1.26009 0.86673 0.84850 0.91379 1.68404 1.08012 1.25678
1.24341 1.44086 1.57741 1.09300 1.21432 1.20397 0.93890 0.84795
0.97107 1.19470 1.16246 0.91231 1.12009 0.90957 1.25572 0.98873
0.96576 1.02358 1.70263 1.40360 1.08534 1.38120 0.85374 0.77131
0.78432 0.79998 1.22868 1.22234 1.19212 0.90398 0.93331 0.92635
0.90468 0.93498 0.73996 0.82844 0.88079 0.89992 0.84725 0.72079
0.98458 0.96628 0.96000 0.94706
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -4.44 9.18 71.98 0.66 -3.78 16
2 C 0.16 5.65 2.87 44.99 0.13 5.78 16
3 H 0.08 2.64 7.86 -2.38 -0.02 2.62 16
4 C 0.11 3.85 4.97 86.38 0.43 4.28 16
5 N -0.67 -26.28 5.38 -465.28 -2.50 -28.79 16
6 C 0.55 21.97 7.83 87.00 0.68 22.66 16
7 O -0.57 -24.97 16.37 -3.60 -0.06 -25.03 16
8 C 0.14 5.01 6.77 41.44 0.28 5.29 16
9 C -0.24 -8.12 9.67 23.03 0.22 -7.90 16
10 C 0.52 15.65 7.47 85.04 0.63 16.28 16
11 O -0.57 -20.12 16.77 -5.01 -0.08 -20.20 16
12 N -0.52 -10.50 2.97 -678.23 -2.01 -12.52 16
13 C 0.05 0.53 10.39 127.77 1.33 1.86 16
14 C 0.39 7.71 11.45 180.37 2.07 9.78 16
15 N -0.54 -16.29 9.64 -188.17 -1.81 -18.10 16
16 N -0.60 -27.01 2.29 -702.78 -1.61 -28.62 16
17 C 0.18 8.68 8.10 127.77 1.04 9.72 16
18 C -0.26 -12.66 9.33 84.03 0.78 -11.88 16
19 H 0.07 3.42 7.81 -2.91 -0.02 3.39 16
20 C -0.04 -1.91 5.10 84.86 0.43 -1.47 16
21 N -0.93 -50.24 10.63 21.65 0.23 -50.01 16
22 Si 0.96 41.15 29.57 68.60 2.03 43.18 16
23 H -0.30 -13.30 7.11 99.48 0.71 -12.60 16
24 H -0.30 -12.70 7.11 99.48 0.71 -11.99 16
25 H -0.27 -10.78 7.11 99.48 0.71 -10.07 16
26 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16
27 H 0.05 1.49 6.66 -2.39 -0.02 1.47 16
28 H 0.05 1.69 8.14 -2.39 -0.02 1.68 16
29 H 0.08 2.49 8.14 -2.38 -0.02 2.47 16
30 H 0.05 1.83 7.84 -2.38 -0.02 1.81 16
31 H 0.42 17.52 7.26 -92.71 -0.67 16.85 16
32 H 0.15 5.40 7.68 -2.91 -0.02 5.38 16
33 H 0.10 0.74 8.14 -2.38 -0.02 0.72 16
34 H 0.08 1.17 7.44 -2.39 -0.02 1.15 16
35 H 0.13 0.34 8.00 -2.39 -0.02 0.32 16
36 H 0.26 2.08 8.01 -2.91 -0.02 2.06 16
37 H 0.00 -0.15 7.42 -2.39 -0.02 -0.17 16
38 H 0.01 0.79 7.20 -2.38 -0.02 0.77 16
39 H 0.02 0.91 6.43 -2.39 -0.02 0.89 16
40 H 0.24 13.08 8.31 -92.71 -0.77 12.31 16
Total: -1.00 -71.86 338.57 3.25 -68.61
By element:
Atomic # 1 Polarization: 20.49 SS G_CDS: 0.39 Total: 20.88 kcal
Atomic # 6 Polarization: 41.92 SS G_CDS: 8.68 Total: 50.61 kcal
Atomic # 7 Polarization: -130.33 SS G_CDS: -7.71 Total: -138.03 kcal
Atomic # 8 Polarization: -45.09 SS G_CDS: -0.14 Total: -45.24 kcal
Atomic # 14 Polarization: 41.15 SS G_CDS: 2.03 Total: 43.18 kcal
Total: -71.86 3.25 -68.61 kcal
The number of atoms in the molecule is 40
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001485312341.mol2 40
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 49.961 kcal
(2) G-P(sol) polarization free energy of solvation -71.858 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.896 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.252 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.605 kcal
(6) G-S(sol) free energy of system = (1) + (5) -18.644 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.74 seconds