Wall clock time and date at job start Tue Mar 31 2020 04:06:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09006 * 109.46730 * 2 1 4 4 C 1.52994 * 109.47101 * 120.00075 * 2 1 3 5 5 N 1.46507 * 109.46897 * 175.00189 * 4 2 1 6 6 C 1.46498 * 119.99918 * 269.99571 * 5 4 2 7 7 C 1.34770 * 119.99838 * 90.00103 * 5 4 2 8 8 O 1.21610 * 120.00452 * 2.42532 * 7 5 4 9 9 C 1.47388 * 120.00096 * 182.42803 * 7 5 4 10 10 C 1.38206 * 126.46884 * 172.49011 * 9 7 5 11 11 N 1.34261 * 108.40085 * 180.02562 * 10 9 7 12 12 H 0.97005 * 125.39169 * 180.02562 * 11 10 9 13 13 C 1.37774 * 109.21579 * 359.97438 * 11 10 9 14 14 C 1.46820 * 125.84991 * 180.02562 * 13 11 10 15 15 N 1.34773 * 119.99764 * 0.02781 * 14 13 11 16 16 O 1.21675 * 119.99721 * 180.02562 * 14 13 11 17 17 C 1.36346 * 108.30292 * 0.26479 * 13 11 10 18 18 N 1.46497 * 109.47198 * 240.00375 * 2 1 3 19 19 C 1.36938 * 120.00316 * 84.99703 * 18 2 1 20 20 H 1.07999 * 119.99907 * 0.02562 * 19 18 2 21 21 C 1.38809 * 120.00131 * 179.97438 * 19 18 2 22 22 N 1.31618 * 120.00119 * 180.02562 * 21 19 18 23 23 Si 1.86805 * 120.00219 * 0.02562 * 21 19 18 24 24 H 1.48498 * 109.47264 * 89.99707 * 23 21 19 25 25 H 1.48503 * 109.47273 * 210.00118 * 23 21 19 26 26 H 1.48507 * 109.46684 * 330.00077 * 23 21 19 27 27 H 1.08995 * 109.47459 * 299.99568 * 1 2 3 28 28 H 1.09001 * 109.47448 * 60.00070 * 1 2 3 29 29 H 1.09008 * 109.47065 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.47118 * 55.00260 * 4 2 1 31 31 H 1.08998 * 109.47030 * 295.00122 * 4 2 1 32 32 H 1.08997 * 109.47297 * 234.25920 * 6 5 4 33 33 H 1.08999 * 109.47019 * 354.26230 * 6 5 4 34 34 H 1.09006 * 109.46584 * 114.26316 * 6 5 4 35 35 H 1.08004 * 125.79799 * 0.04610 * 10 9 7 36 36 H 0.96999 * 119.99940 * 180.02562 * 15 14 13 37 37 H 0.96997 * 120.00159 * 359.71856 * 15 14 13 38 38 H 1.08000 * 126.49884 * 179.73715 * 17 13 11 39 39 H 0.97002 * 119.99770 * 265.00125 * 18 2 1 40 40 H 0.97000 * 120.00197 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 7 3.5001 -0.8263 1.1905 6 6 4.1259 -1.9919 0.5612 7 6 4.2675 0.1492 1.7155 8 8 3.7489 1.0951 2.2770 9 6 5.7354 0.0698 1.6092 10 6 6.6392 1.0529 1.9655 11 7 7.8783 0.5994 1.7172 12 1 8.6990 1.0912 1.8771 13 6 7.7996 -0.6753 1.2004 14 6 8.9373 -1.5129 0.8009 15 7 10.1953 -1.0463 0.9288 16 8 8.7445 -2.6283 0.3545 17 6 6.4840 -1.0237 1.1186 18 7 2.0183 -0.6905 -1.1962 19 6 2.1491 -0.0074 -2.3758 20 1 1.8926 1.0406 -2.4241 21 6 2.6123 -0.6616 -3.5090 22 7 2.7385 -0.0048 -4.6427 23 14 3.0567 -2.4741 -3.4252 24 1 1.8596 -3.2925 -3.7452 25 1 4.1326 -2.7659 -4.4064 26 1 3.5311 -2.8046 -2.0574 27 1 -0.3634 0.5137 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.6054 -1.7198 1.2951 31 1 1.7516 -0.1583 2.1369 32 1 4.8249 -2.4508 1.2603 33 1 3.3567 -2.7147 0.2892 34 1 4.6617 -1.6772 -0.3344 35 1 6.3909 2.0211 2.3745 36 1 10.9469 -1.5996 0.6645 37 1 10.3488 -0.1557 1.2809 38 1 6.0888 -1.9590 0.7506 39 1 2.2490 -1.6317 -1.1526 40 1 3.0618 -0.4621 -5.4347 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001485955662.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:06:45 Heat of formation + Delta-G solvation = 7.072235 kcal Electronic energy + Delta-G solvation = -24120.617399 eV Core-core repulsion = 20551.490381 eV Total energy + Delta-G solvation = -3569.127018 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.148 amu Computer time = 2.54 seconds Orbital eigenvalues (eV) -41.72095 -39.40544 -38.77880 -36.30800 -34.45212 -34.03547 -32.21241 -31.25627 -29.58460 -29.35905 -27.06458 -25.89153 -23.43378 -23.33282 -22.05641 -20.58458 -19.94039 -19.38959 -18.35067 -17.55550 -17.32925 -16.09234 -15.82408 -15.67500 -15.46877 -14.94954 -14.58652 -14.19059 -14.04344 -13.91161 -13.64436 -13.24203 -12.95820 -12.59209 -12.55847 -12.29137 -12.19728 -11.56440 -11.48488 -11.05491 -10.85118 -10.59846 -10.52869 -10.48596 -10.09132 -9.95660 -9.58107 -9.48129 -9.19507 -8.87981 -8.52063 -8.12124 -7.17299 -5.69255 -3.03542 1.26479 1.90619 2.73155 3.11459 3.15774 3.37264 3.42442 3.44171 3.50790 3.79358 4.61643 4.64887 4.87777 4.92250 5.11977 5.31976 5.40928 5.57301 5.61040 5.63675 5.70754 5.75492 5.90689 6.12068 6.17179 6.25152 6.28055 6.30800 6.42323 6.52295 6.55248 6.83972 6.88225 6.92608 7.09861 7.15447 7.78448 7.91703 8.08180 8.49312 8.59999 9.28528 10.00782 10.21147 11.49524 Molecular weight = 294.15amu Principal moments of inertia in cm(-1) A = 0.013365 B = 0.005617 C = 0.004468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2094.544300 B = 4983.958604 C = 6264.824096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.160 3.840 3 H 0.059 0.941 4 C 0.109 3.891 5 N -0.591 5.591 6 C 0.073 3.927 7 C 0.592 3.408 8 O -0.556 6.556 9 C -0.224 4.224 10 C 0.104 3.896 11 N -0.531 5.531 12 H 0.418 0.582 13 C -0.076 4.076 14 C 0.596 3.404 15 N -0.858 5.858 16 O -0.527 6.527 17 C -0.081 4.081 18 N -0.744 5.744 19 C -0.233 4.233 20 H 0.088 0.912 21 C 0.002 3.998 22 N -0.937 5.937 23 Si 0.879 3.121 24 H -0.287 1.287 25 H -0.293 1.293 26 H -0.273 1.273 27 H 0.041 0.959 28 H 0.059 0.941 29 H 0.045 0.955 30 H 0.071 0.929 31 H 0.085 0.915 32 H 0.067 0.933 33 H 0.071 0.929 34 H 0.073 0.927 35 H 0.187 0.813 36 H 0.407 0.593 37 H 0.394 0.606 38 H 0.176 0.824 39 H 0.358 0.642 40 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.858 -0.867 16.751 21.135 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.050 3.950 3 H 0.077 0.923 4 C -0.015 4.015 5 N -0.322 5.322 6 C -0.069 4.069 7 C 0.382 3.618 8 O -0.437 6.437 9 C -0.233 4.233 10 C -0.038 4.038 11 N -0.126 5.126 12 H 0.255 0.745 13 C -0.187 4.187 14 C 0.382 3.618 15 N -0.422 5.422 16 O -0.403 6.403 17 C -0.106 4.106 18 N -0.387 5.387 19 C -0.363 4.363 20 H 0.106 0.894 21 C -0.193 4.193 22 N -0.585 5.585 23 Si 0.710 3.290 24 H -0.214 1.214 25 H -0.219 1.219 26 H -0.199 1.199 27 H 0.060 0.940 28 H 0.079 0.921 29 H 0.064 0.936 30 H 0.090 0.910 31 H 0.104 0.896 32 H 0.085 0.915 33 H 0.090 0.910 34 H 0.091 0.909 35 H 0.204 0.796 36 H 0.239 0.761 37 H 0.222 0.778 38 H 0.193 0.807 39 H 0.191 0.809 40 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 12.443 -0.916 16.584 20.753 hybrid contribution 1.173 -0.792 -0.239 1.435 sum 13.616 -1.708 16.345 21.342 Atomic orbital electron populations 1.22341 0.98363 1.00818 1.00758 1.20624 0.92066 0.96570 0.85788 0.92260 1.21935 0.78610 1.01196 0.99712 1.47344 1.06568 1.21117 1.57122 1.22446 0.98815 0.87815 0.97865 1.17224 0.85107 0.81687 0.77801 1.90725 1.74812 1.32938 1.45185 1.19648 0.93487 0.96703 1.13482 1.22325 0.82241 0.99542 0.99691 1.41690 1.08472 1.13391 1.49082 0.74494 1.20026 0.95642 0.87618 1.15377 1.17061 0.81939 0.85598 0.77181 1.43696 1.08042 1.20893 1.69521 1.90910 1.84816 1.19382 1.45151 1.22349 0.90319 1.00120 0.97811 1.42725 1.79741 1.09193 1.07074 1.19059 1.36252 0.95519 0.85483 0.89429 1.24641 1.01730 0.97344 0.95596 1.69700 1.53158 1.35433 1.00257 0.86664 0.78029 0.87061 0.77231 1.21383 1.21921 1.19861 0.93977 0.92149 0.93611 0.91034 0.89636 0.91505 0.90990 0.90888 0.79585 0.76121 0.77810 0.80732 0.80920 0.93246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.88 9.49 37.16 0.35 -2.53 16 2 C 0.16 3.19 3.20 -67.94 -0.22 2.97 16 3 H 0.06 1.34 8.08 -51.93 -0.42 0.92 16 4 C 0.11 1.81 5.04 -4.04 -0.02 1.79 16 5 N -0.59 -10.11 2.73 -182.87 -0.50 -10.60 16 6 C 0.07 1.15 6.93 59.85 0.41 1.57 16 7 C 0.59 10.48 7.67 -12.54 -0.10 10.39 16 8 O -0.56 -11.02 16.47 5.27 0.09 -10.93 16 9 C -0.22 -3.33 6.04 -105.02 -0.63 -3.96 16 10 C 0.10 1.15 11.73 -16.50 -0.19 0.96 16 11 N -0.53 -4.46 5.91 -9.30 -0.05 -4.52 16 12 H 0.42 1.61 8.14 -40.82 -0.33 1.28 16 13 C -0.08 -0.91 6.99 -82.41 -0.58 -1.48 16 14 C 0.60 7.01 8.06 -12.79 -0.10 6.90 16 15 N -0.86 -5.58 8.87 30.29 0.27 -5.31 16 16 O -0.53 -8.48 17.69 5.21 0.09 -8.39 16 17 C -0.08 -1.15 8.46 -39.09 -0.33 -1.48 16 18 N -0.74 -17.42 4.37 -53.43 -0.23 -17.65 16 19 C -0.23 -6.61 10.41 -15.06 -0.16 -6.77 16 20 H 0.09 2.72 8.06 -52.49 -0.42 2.29 16 21 C 0.00 0.06 5.50 -17.43 -0.10 -0.04 16 22 N -0.94 -29.84 13.97 55.49 0.78 -29.07 16 23 Si 0.88 22.05 27.74 -169.99 -4.71 17.33 16 24 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 25 H -0.29 -7.57 7.11 56.52 0.40 -7.17 16 26 H -0.27 -6.09 5.81 56.52 0.33 -5.76 16 27 H 0.04 0.64 8.14 -51.93 -0.42 0.21 16 28 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 29 H 0.04 0.76 8.14 -51.92 -0.42 0.34 16 30 H 0.07 1.04 7.88 -51.93 -0.41 0.63 16 31 H 0.09 1.37 7.39 -51.93 -0.38 0.99 16 32 H 0.07 0.87 5.77 -51.93 -0.30 0.57 16 33 H 0.07 1.08 6.95 -51.93 -0.36 0.72 16 34 H 0.07 1.31 6.97 -51.93 -0.36 0.95 16 35 H 0.19 1.64 8.06 -52.48 -0.42 1.22 16 36 H 0.41 2.18 8.93 -40.82 -0.36 1.82 16 37 H 0.39 1.21 7.91 -40.82 -0.32 0.89 16 38 H 0.18 2.53 4.24 -52.49 -0.22 2.30 16 39 H 0.36 8.06 4.01 -40.82 -0.16 7.90 16 40 H 0.26 7.85 8.31 -40.82 -0.34 7.51 16 LS Contribution 332.40 15.07 5.01 5.01 Total: -1.00 -38.36 332.40 -5.89 -44.25 By element: Atomic # 1 Polarization: 16.52 SS G_CDS: -4.96 Total: 11.56 kcal Atomic # 6 Polarization: 9.97 SS G_CDS: -1.66 Total: 8.32 kcal Atomic # 7 Polarization: -67.41 SS G_CDS: 0.26 Total: -67.15 kcal Atomic # 8 Polarization: -19.50 SS G_CDS: 0.18 Total: -19.32 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -4.71 Total: 17.33 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -38.36 -5.89 -44.25 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485955662.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.324 kcal (2) G-P(sol) polarization free energy of solvation -38.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.251 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.54 seconds