Wall clock time and date at job start Tue Mar 31 2020 04:06:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09006 * 109.46730 * 2 1 4 4 C 1.52994 * 109.47101 * 120.00075 * 2 1 3 5 5 N 1.46507 * 109.46897 * 175.00189 * 4 2 1 6 6 C 1.46498 * 119.99918 * 269.99571 * 5 4 2 7 7 C 1.34770 * 119.99838 * 90.00103 * 5 4 2 8 8 O 1.21610 * 120.00452 * 2.42532 * 7 5 4 9 9 C 1.47388 * 120.00096 * 182.42803 * 7 5 4 10 10 C 1.38206 * 126.46884 * 172.49011 * 9 7 5 11 11 N 1.34261 * 108.40085 * 180.02562 * 10 9 7 12 12 H 0.97005 * 125.39169 * 180.02562 * 11 10 9 13 13 C 1.37774 * 109.21579 * 359.97438 * 11 10 9 14 14 C 1.46820 * 125.84991 * 180.02562 * 13 11 10 15 15 N 1.34773 * 119.99764 * 0.02781 * 14 13 11 16 16 O 1.21675 * 119.99721 * 180.02562 * 14 13 11 17 17 C 1.36346 * 108.30292 * 0.26479 * 13 11 10 18 18 N 1.46497 * 109.47198 * 240.00375 * 2 1 3 19 19 C 1.36938 * 120.00316 * 84.99703 * 18 2 1 20 20 H 1.07999 * 119.99907 * 0.02562 * 19 18 2 21 21 C 1.38809 * 120.00131 * 179.97438 * 19 18 2 22 22 N 1.31618 * 120.00119 * 180.02562 * 21 19 18 23 23 Si 1.86805 * 120.00219 * 0.02562 * 21 19 18 24 24 H 1.48498 * 109.47264 * 89.99707 * 23 21 19 25 25 H 1.48503 * 109.47273 * 210.00118 * 23 21 19 26 26 H 1.48507 * 109.46684 * 330.00077 * 23 21 19 27 27 H 1.08995 * 109.47459 * 299.99568 * 1 2 3 28 28 H 1.09001 * 109.47448 * 60.00070 * 1 2 3 29 29 H 1.09008 * 109.47065 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.47118 * 55.00260 * 4 2 1 31 31 H 1.08998 * 109.47030 * 295.00122 * 4 2 1 32 32 H 1.08997 * 109.47297 * 234.25920 * 6 5 4 33 33 H 1.08999 * 109.47019 * 354.26230 * 6 5 4 34 34 H 1.09006 * 109.46584 * 114.26316 * 6 5 4 35 35 H 1.08004 * 125.79799 * 0.04610 * 10 9 7 36 36 H 0.96999 * 119.99940 * 180.02562 * 15 14 13 37 37 H 0.96997 * 120.00159 * 359.71856 * 15 14 13 38 38 H 1.08000 * 126.49884 * 179.73715 * 17 13 11 39 39 H 0.97002 * 119.99770 * 265.00125 * 18 2 1 40 40 H 0.97000 * 120.00197 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 7 3.5001 -0.8263 1.1905 6 6 4.1259 -1.9919 0.5612 7 6 4.2675 0.1492 1.7155 8 8 3.7489 1.0951 2.2770 9 6 5.7354 0.0698 1.6092 10 6 6.6392 1.0529 1.9655 11 7 7.8783 0.5994 1.7172 12 1 8.6990 1.0912 1.8771 13 6 7.7996 -0.6753 1.2004 14 6 8.9373 -1.5129 0.8009 15 7 10.1953 -1.0463 0.9288 16 8 8.7445 -2.6283 0.3545 17 6 6.4840 -1.0237 1.1186 18 7 2.0183 -0.6905 -1.1962 19 6 2.1491 -0.0074 -2.3758 20 1 1.8926 1.0406 -2.4241 21 6 2.6123 -0.6616 -3.5090 22 7 2.7385 -0.0048 -4.6427 23 14 3.0567 -2.4741 -3.4252 24 1 1.8596 -3.2925 -3.7452 25 1 4.1326 -2.7659 -4.4064 26 1 3.5311 -2.8046 -2.0574 27 1 -0.3634 0.5137 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.6054 -1.7198 1.2951 31 1 1.7516 -0.1583 2.1369 32 1 4.8249 -2.4508 1.2603 33 1 3.3567 -2.7147 0.2892 34 1 4.6617 -1.6772 -0.3344 35 1 6.3909 2.0211 2.3745 36 1 10.9469 -1.5996 0.6645 37 1 10.3488 -0.1557 1.2809 38 1 6.0888 -1.9590 0.7506 39 1 2.2490 -1.6317 -1.1526 40 1 3.0618 -0.4621 -5.4347 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001485955662.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:06:43 Heat of formation + Delta-G solvation = -25.202478 kcal Electronic energy + Delta-G solvation = -24122.016936 eV Core-core repulsion = 20551.490381 eV Total energy + Delta-G solvation = -3570.526555 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.148 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.66464 -40.61714 -39.80986 -37.90808 -35.95930 -34.89916 -34.10266 -32.47734 -31.21997 -30.50787 -28.36535 -27.20078 -25.41295 -24.26878 -23.31955 -21.79259 -21.32397 -20.26986 -19.78574 -19.36042 -18.16068 -17.25385 -17.04975 -16.74307 -16.61621 -16.44466 -16.14116 -15.58037 -15.29500 -14.99227 -14.87672 -14.63094 -14.53179 -14.12320 -13.91285 -13.73812 -13.61097 -13.24608 -12.91117 -12.75578 -12.43403 -12.23148 -12.17251 -11.74031 -11.67746 -11.53780 -11.00359 -10.86916 -10.84640 -10.16810 -9.67790 -9.37611 -9.18087 -7.98106 -5.30113 0.35951 0.79552 1.37888 1.43160 1.50334 1.88994 2.15715 2.19403 2.47485 2.52034 2.57973 3.34082 3.60717 3.78454 3.92382 4.09955 4.11949 4.16901 4.23653 4.37280 4.52890 4.63915 4.68723 4.75048 4.83415 4.89435 4.92715 5.04974 5.27267 5.36282 5.40482 5.54138 5.73445 5.78403 5.81482 6.23935 6.24426 6.42551 6.50701 7.12668 7.16864 7.28711 7.87427 8.09935 9.23992 Molecular weight = 294.15amu Principal moments of inertia in cm(-1) A = 0.013365 B = 0.005617 C = 0.004468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2094.544300 B = 4983.958604 C = 6264.824096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.156 3.844 3 H 0.023 0.977 4 C 0.114 3.886 5 N -0.598 5.598 6 C 0.074 3.926 7 C 0.583 3.417 8 O -0.588 6.588 9 C -0.263 4.263 10 C 0.124 3.876 11 N -0.500 5.500 12 H 0.443 0.557 13 C -0.075 4.075 14 C 0.595 3.405 15 N -0.829 5.829 16 O -0.577 6.577 17 C -0.103 4.103 18 N -0.740 5.740 19 C -0.218 4.218 20 H 0.045 0.955 21 C -0.066 4.066 22 N -0.989 5.989 23 Si 0.946 3.054 24 H -0.280 1.280 25 H -0.304 1.304 26 H -0.232 1.232 27 H 0.071 0.929 28 H 0.031 0.969 29 H 0.063 0.937 30 H 0.102 0.898 31 H 0.093 0.907 32 H 0.092 0.908 33 H 0.082 0.918 34 H 0.047 0.953 35 H 0.212 0.788 36 H 0.417 0.583 37 H 0.414 0.586 38 H 0.167 0.833 39 H 0.366 0.634 40 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.369 -2.018 19.038 23.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.047 3.953 3 H 0.041 0.959 4 C -0.009 4.009 5 N -0.327 5.327 6 C -0.069 4.069 7 C 0.374 3.626 8 O -0.471 6.471 9 C -0.272 4.272 10 C -0.020 4.020 11 N -0.097 5.097 12 H 0.285 0.715 13 C -0.186 4.186 14 C 0.381 3.619 15 N -0.394 5.394 16 O -0.456 6.456 17 C -0.128 4.128 18 N -0.385 5.385 19 C -0.349 4.349 20 H 0.063 0.937 21 C -0.257 4.257 22 N -0.640 5.640 23 Si 0.773 3.227 24 H -0.207 1.207 25 H -0.231 1.231 26 H -0.156 1.156 27 H 0.090 0.910 28 H 0.050 0.950 29 H 0.082 0.918 30 H 0.121 0.879 31 H 0.112 0.888 32 H 0.110 0.890 33 H 0.101 0.899 34 H 0.065 0.935 35 H 0.229 0.771 36 H 0.250 0.750 37 H 0.245 0.755 38 H 0.184 0.816 39 H 0.201 0.799 40 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 14.017 -2.036 18.951 23.659 hybrid contribution 0.756 -0.259 -0.898 1.202 sum 14.773 -2.295 18.053 23.440 Atomic orbital electron populations 1.22193 0.96244 1.02026 1.00852 1.20777 0.93520 0.94901 0.86092 0.95895 1.21898 0.78799 1.02476 0.97725 1.47482 1.06731 1.21527 1.56976 1.22501 0.99370 0.87455 0.97554 1.17723 0.86435 0.81214 0.77179 1.90688 1.75659 1.34033 1.46714 1.19616 0.92500 0.98601 1.16502 1.22636 0.82252 0.99448 0.97702 1.41562 1.08952 1.12177 1.46975 0.71485 1.19965 0.95058 0.88602 1.14967 1.17080 0.83133 0.84871 0.76835 1.43445 1.06557 1.21788 1.67604 1.90889 1.85664 1.21438 1.47647 1.22316 0.91528 1.00066 0.98935 1.42611 1.79944 1.09418 1.06507 1.18921 1.34621 0.93970 0.87416 0.93719 1.25461 1.02509 1.02665 0.95039 1.69901 1.55185 1.37739 1.01221 0.85574 0.77475 0.80592 0.79013 1.20675 1.23145 1.15578 0.90999 0.94971 0.91767 0.87944 0.88829 0.88964 0.89922 0.93453 0.77136 0.74968 0.75469 0.81629 0.79945 0.93670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.26 9.49 71.98 0.68 -4.58 16 2 C 0.16 6.19 3.20 44.99 0.14 6.33 16 3 H 0.02 1.07 8.08 -2.38 -0.02 1.05 16 4 C 0.11 3.61 5.04 86.38 0.44 4.04 16 5 N -0.60 -19.83 2.73 -850.73 -2.32 -22.15 16 6 C 0.07 2.20 6.93 127.77 0.89 3.08 16 7 C 0.58 20.43 7.67 86.65 0.66 21.09 16 8 O -0.59 -23.25 16.47 -4.06 -0.07 -23.32 16 9 C -0.26 -7.57 6.04 -20.12 -0.12 -7.69 16 10 C 0.12 2.46 11.73 84.31 0.99 3.45 16 11 N -0.50 -6.85 5.91 -183.35 -1.08 -7.93 16 12 H 0.44 1.53 8.14 -92.70 -0.75 0.78 16 13 C -0.07 -1.62 6.99 40.01 0.28 -1.34 16 14 C 0.59 12.85 8.06 86.49 0.70 13.55 16 15 N -0.83 -8.27 8.87 -176.30 -1.56 -9.83 16 16 O -0.58 -18.11 17.69 -4.27 -0.08 -18.19 16 17 C -0.10 -2.84 8.46 22.58 0.19 -2.65 16 18 N -0.74 -34.48 4.37 -322.95 -1.41 -35.89 16 19 C -0.22 -12.73 10.41 84.03 0.87 -11.86 16 20 H 0.04 2.94 8.06 -2.91 -0.02 2.92 16 21 C -0.07 -3.98 5.50 84.86 0.47 -3.51 16 22 N -0.99 -65.24 13.97 21.65 0.30 -64.93 16 23 Si 0.95 45.59 27.74 68.60 1.90 47.49 16 24 H -0.28 -13.20 7.11 99.48 0.71 -12.49 16 25 H -0.30 -15.22 7.11 99.48 0.71 -14.52 16 26 H -0.23 -9.49 5.81 99.48 0.58 -8.91 16 27 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 28 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 29 H 0.06 1.97 8.14 -2.38 -0.02 1.96 16 30 H 0.10 2.62 7.88 -2.39 -0.02 2.60 16 31 H 0.09 2.85 7.39 -2.39 -0.02 2.83 16 32 H 0.09 2.28 5.77 -2.39 -0.01 2.27 16 33 H 0.08 2.24 6.95 -2.39 -0.02 2.22 16 34 H 0.05 1.66 6.97 -2.38 -0.02 1.65 16 35 H 0.21 3.10 8.06 -2.91 -0.02 3.08 16 36 H 0.42 3.25 8.93 -92.71 -0.83 2.42 16 37 H 0.41 0.89 7.91 -92.71 -0.73 0.16 16 38 H 0.17 4.73 4.24 -2.91 -0.01 4.72 16 39 H 0.37 15.83 4.01 -92.71 -0.37 15.46 16 40 H 0.25 16.06 8.31 -92.71 -0.77 15.29 16 Total: -1.00 -88.30 332.40 0.19 -88.12 By element: Atomic # 1 Polarization: 28.41 SS G_CDS: -1.69 Total: 26.73 kcal Atomic # 6 Polarization: 13.72 SS G_CDS: 6.19 Total: 19.91 kcal Atomic # 7 Polarization: -134.66 SS G_CDS: -6.08 Total: -140.74 kcal Atomic # 8 Polarization: -41.36 SS G_CDS: -0.14 Total: -41.51 kcal Atomic # 14 Polarization: 45.59 SS G_CDS: 1.90 Total: 47.49 kcal Total: -88.30 0.19 -88.12 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485955662.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.916 kcal (2) G-P(sol) polarization free energy of solvation -88.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.119 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds