Wall clock time and date at job start Tue Mar 31 2020 03:06:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.29953 * 125.30466 * 2 1 4 4 O 1.41876 * 107.40974 * 180.02562 * 3 2 1 5 5 N 1.41878 * 106.39024 * 359.77916 * 4 3 2 6 6 C 1.29951 * 107.41315 * 0.36926 * 5 4 3 7 7 C 1.50695 * 125.30359 * 179.89074 * 6 5 4 8 8 C 1.50704 * 109.47229 * 269.69466 * 7 6 5 9 9 O 1.21283 * 119.99598 * 0.02562 * 8 7 6 10 10 N 1.34778 * 119.99894 * 180.02562 * 8 7 6 11 11 C 1.46505 * 119.99661 * 179.97438 * 10 8 7 12 12 C 1.52994 * 109.46671 * 179.97438 * 11 10 8 13 13 H 1.08994 * 112.85600 * 43.80495 * 12 11 10 14 14 C 1.53790 * 113.61253 * 175.00078 * 12 11 10 15 15 C 1.53782 * 87.08176 * 139.98108 * 14 12 11 16 16 H 1.08997 * 113.61369 * 89.19654 * 15 14 12 17 17 N 1.46498 * 113.61388 * 220.02130 * 15 14 12 18 18 C 1.36943 * 119.99727 * 205.00107 * 17 15 14 19 19 H 1.07998 * 120.00392 * 359.97438 * 18 17 15 20 20 C 1.38811 * 119.99586 * 179.97438 * 18 17 15 21 21 N 1.31618 * 120.00460 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 119.99694 * 179.97438 * 20 18 17 23 23 H 1.48506 * 109.47297 * 179.97438 * 22 20 18 24 24 H 1.48503 * 109.47261 * 60.00129 * 22 20 18 25 25 H 1.48500 * 109.47454 * 300.00122 * 22 20 18 26 26 C 1.53785 * 113.61678 * 272.49712 * 12 11 10 27 27 H 1.08998 * 109.47240 * 270.00510 * 1 2 3 28 28 H 1.09001 * 109.46846 * 29.99829 * 1 2 3 29 29 H 1.08991 * 109.47442 * 149.99803 * 1 2 3 30 30 H 1.09000 * 109.47160 * 149.69719 * 7 6 5 31 31 H 1.08999 * 109.47239 * 29.69599 * 7 6 5 32 32 H 0.96990 * 119.99999 * 359.97438 * 10 8 7 33 33 H 1.09000 * 109.46957 * 60.00074 * 11 10 8 34 34 H 1.08999 * 109.47238 * 300.00079 * 11 10 8 35 35 H 1.08999 * 113.61219 * 25.43142 * 14 12 11 36 36 H 1.08996 * 113.68978 * 254.53746 * 14 12 11 37 37 H 0.96998 * 120.00095 * 24.99566 * 17 15 14 38 38 H 0.97001 * 119.99952 * 359.97438 * 21 20 18 39 39 H 1.09001 * 113.61484 * 105.47478 * 26 12 11 40 40 H 1.08998 * 113.61333 * 334.57032 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2581 1.0605 0.0000 4 8 3.6082 0.6246 -0.0006 5 7 3.5709 -0.7937 0.0043 6 6 2.3212 -1.1499 -0.0006 7 6 1.8208 -2.5714 -0.0003 8 6 1.6530 -3.0452 -1.4210 9 8 1.9146 -2.3019 -2.3430 10 7 1.2124 -4.2949 -1.6670 11 6 1.0488 -4.7553 -3.0482 12 6 0.5408 -6.1985 -3.0478 13 1 -0.2547 -6.3671 -2.3221 14 6 0.2190 -6.7386 -4.4513 15 6 0.8448 -8.0680 -3.9974 16 1 0.1326 -8.7494 -3.5321 17 7 1.6609 -8.7145 -5.0279 18 6 1.8540 -10.0699 -4.9980 19 1 1.4050 -10.6622 -4.2145 20 6 2.6269 -10.6825 -5.9748 21 7 3.1746 -9.9607 -6.9294 22 14 2.8909 -12.5313 -5.9336 23 1 3.7463 -12.9349 -7.0785 24 1 1.5792 -13.2209 -6.0292 25 1 3.5566 -12.9081 -4.6607 26 6 1.6642 -7.2470 -2.9877 27 1 -0.3633 0.0001 1.0276 28 1 -0.3633 0.8900 -0.5138 29 1 -0.3634 -0.8899 -0.5138 30 1 0.8610 -2.6186 0.5142 31 1 2.5399 -3.2096 0.5131 32 1 1.0036 -4.8894 -0.9296 33 1 2.0085 -4.7084 -3.5628 34 1 0.3297 -4.1167 -3.5612 35 1 0.7749 -6.2437 -5.2476 36 1 -0.8486 -6.8074 -4.6598 37 1 2.0645 -8.1825 -5.7315 38 1 3.0379 -9.0006 -6.9506 39 1 1.7630 -7.7258 -2.0135 40 1 2.6152 -6.8911 -3.3840 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001488782368.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:06:13 Heat of formation + Delta-G solvation = 79.628004 kcal Electronic energy + Delta-G solvation = -22486.318361 eV Core-core repulsion = 18920.337597 eV Total energy + Delta-G solvation = -3565.980764 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.148 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.90548 -40.04000 -38.65612 -35.11378 -34.86161 -33.81413 -33.66023 -30.63631 -29.75886 -29.15689 -27.08775 -25.25578 -23.76646 -23.03189 -21.61950 -21.29657 -20.60359 -19.21279 -17.72338 -17.37324 -17.26921 -16.39112 -16.18357 -15.84318 -15.18225 -14.90975 -14.73677 -14.40494 -13.92624 -13.87436 -13.84152 -13.65812 -13.47019 -13.28032 -12.73484 -12.13397 -12.10523 -12.03051 -11.98614 -11.65433 -11.30782 -11.04840 -11.00031 -10.79974 -10.51628 -10.42084 -10.10473 -10.04779 -9.92715 -9.30955 -9.15478 -8.92332 -7.08940 -6.15389 -3.15879 0.18324 1.52242 2.20747 2.25440 2.68511 2.93313 3.43069 3.48479 3.51811 3.69686 4.04978 4.34857 4.36184 4.60790 4.62413 4.72489 4.78773 4.81880 4.82819 4.92341 5.05525 5.18537 5.32276 5.36742 5.42171 5.65038 5.66406 5.79069 5.85298 6.03706 6.12967 6.17979 6.24941 6.43634 6.55600 6.64177 6.94946 7.13440 7.75472 7.82926 8.70230 9.16855 10.03244 10.17935 11.32644 Molecular weight = 294.15amu Principal moments of inertia in cm(-1) A = 0.036330 B = 0.002281 C = 0.002228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 770.530927 B =12272.923696 C =12566.719909 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C 0.086 3.914 3 N -0.278 5.278 4 O 0.028 5.972 5 N -0.260 5.260 6 C 0.095 3.905 7 C -0.082 4.082 8 C 0.515 3.485 9 O -0.532 6.532 10 N -0.718 5.718 11 C 0.132 3.868 12 C -0.126 4.126 13 H 0.091 0.909 14 C -0.144 4.144 15 C 0.171 3.829 16 H 0.077 0.923 17 N -0.724 5.724 18 C -0.337 4.337 19 H 0.065 0.935 20 C -0.045 4.045 21 N -0.942 5.942 22 Si 1.080 2.920 23 H -0.285 1.285 24 H -0.295 1.295 25 H -0.295 1.295 26 C -0.162 4.162 27 H 0.098 0.902 28 H 0.092 0.908 29 H 0.092 0.908 30 H 0.130 0.870 31 H 0.127 0.873 32 H 0.403 0.597 33 H 0.071 0.929 34 H 0.067 0.933 35 H 0.079 0.921 36 H 0.063 0.937 37 H 0.368 0.632 38 H 0.255 0.745 39 H 0.055 0.945 40 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.916 16.161 18.185 26.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.096 4.096 3 N -0.024 5.024 4 O -0.113 6.113 5 N -0.002 5.002 6 C -0.089 4.089 7 C -0.123 4.123 8 C 0.298 3.702 9 O -0.408 6.408 10 N -0.370 5.370 11 C 0.009 3.991 12 C -0.145 4.145 13 H 0.109 0.891 14 C -0.184 4.184 15 C 0.059 3.941 16 H 0.095 0.905 17 N -0.364 5.364 18 C -0.468 4.468 19 H 0.083 0.917 20 C -0.242 4.242 21 N -0.587 5.587 22 Si 0.911 3.089 23 H -0.210 1.210 24 H -0.222 1.222 25 H -0.222 1.222 26 C -0.203 4.203 27 H 0.116 0.884 28 H 0.111 0.889 29 H 0.111 0.889 30 H 0.148 0.852 31 H 0.145 0.855 32 H 0.238 0.762 33 H 0.089 0.911 34 H 0.086 0.914 35 H 0.097 0.903 36 H 0.082 0.918 37 H 0.202 0.798 38 H 0.067 0.933 39 H 0.074 0.926 40 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -7.858 16.063 16.852 24.572 hybrid contribution -1.223 0.778 0.994 1.758 sum -9.081 16.841 17.847 26.165 Atomic orbital electron populations 1.20583 0.84209 1.05631 1.04663 1.24513 1.00310 0.88810 0.95996 1.79915 0.89110 1.19596 1.13766 1.93401 1.20150 1.13234 1.84525 1.79933 1.17358 0.91455 1.11463 1.23754 0.90082 0.97680 0.97342 1.20363 1.05209 0.89321 0.97389 1.20044 0.77705 0.82394 0.90039 1.90797 1.49398 1.54706 1.45930 1.45961 1.67236 1.13696 1.10090 1.21497 1.01569 0.94677 0.81379 1.22638 0.99912 0.92316 0.99671 0.89122 1.23469 1.00860 0.99008 0.95062 1.21454 0.92229 0.90468 0.89919 0.90502 1.42424 1.58681 1.05610 1.29645 1.20087 1.30586 0.84097 1.12058 0.91671 1.25813 0.97311 1.06848 0.94267 1.70888 1.46643 1.07021 1.34117 0.83244 0.75950 0.74062 0.75680 1.20998 1.22216 1.22225 1.23956 0.97722 0.97376 1.01221 0.88398 0.88947 0.88889 0.85248 0.85513 0.76218 0.91091 0.91439 0.90285 0.91830 0.79807 0.93340 0.92583 0.90490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.40 10.05 36.01 0.36 -0.03 16 2 C 0.09 0.77 7.19 -82.38 -0.59 0.18 16 3 N -0.28 -3.31 12.98 33.74 0.44 -2.87 16 4 O 0.03 0.39 13.71 12.02 0.16 0.56 16 5 N -0.26 -3.32 12.98 33.74 0.44 -2.88 16 6 C 0.10 0.91 5.68 -82.38 -0.47 0.44 16 7 C -0.08 -0.47 5.87 -29.04 -0.17 -0.64 16 8 C 0.51 4.99 7.82 -10.98 -0.09 4.91 16 9 O -0.53 -7.86 16.03 5.55 0.09 -7.77 16 10 N -0.72 -6.01 5.56 -60.29 -0.33 -6.35 16 11 C 0.13 1.47 5.51 -4.04 -0.02 1.45 16 12 C -0.13 -1.46 3.75 -89.80 -0.34 -1.80 16 13 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 14 C -0.14 -2.12 7.39 -25.91 -0.19 -2.31 16 15 C 0.17 3.17 4.48 -67.12 -0.30 2.87 16 16 H 0.08 1.43 8.10 -51.93 -0.42 1.00 16 17 N -0.72 -17.65 5.40 -52.64 -0.28 -17.93 16 18 C -0.34 -9.30 9.97 -15.06 -0.15 -9.45 16 19 H 0.07 1.75 7.83 -52.49 -0.41 1.34 16 20 C -0.04 -1.28 5.50 -17.43 -0.10 -1.38 16 21 N -0.94 -28.98 13.70 55.49 0.76 -28.22 16 22 Si 1.08 25.54 29.92 -169.99 -5.09 20.46 16 23 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 24 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 25 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 26 C -0.16 -2.48 7.43 -25.91 -0.19 -2.67 16 27 H 0.10 0.17 8.14 -51.93 -0.42 -0.26 16 28 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.09 0.29 7.77 -51.93 -0.40 -0.11 16 30 H 0.13 0.17 7.78 -51.93 -0.40 -0.23 16 31 H 0.13 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.40 2.11 8.47 -40.82 -0.35 1.77 16 33 H 0.07 0.97 7.84 -51.93 -0.41 0.56 16 34 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.08 1.23 8.08 -51.93 -0.42 0.81 16 36 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.37 9.33 6.76 -40.82 -0.28 9.05 16 38 H 0.26 7.73 6.77 -40.82 -0.28 7.45 16 39 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 40 H 0.08 1.33 7.89 -51.93 -0.41 0.92 16 LS Contribution 346.53 15.07 5.22 5.22 Total: -1.00 -36.80 346.53 -6.37 -43.17 By element: Atomic # 1 Polarization: 10.58 SS G_CDS: -5.53 Total: 5.05 kcal Atomic # 6 Polarization: -6.19 SS G_CDS: -2.24 Total: -8.44 kcal Atomic # 7 Polarization: -59.26 SS G_CDS: 1.02 Total: -58.24 kcal Atomic # 8 Polarization: -7.46 SS G_CDS: 0.25 Total: -7.21 kcal Atomic # 14 Polarization: 25.54 SS G_CDS: -5.09 Total: 20.46 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -36.80 -6.37 -43.17 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001488782368.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.794 kcal (2) G-P(sol) polarization free energy of solvation -36.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.166 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.628 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds