Wall clock time and date at job start Tue Mar 31 2020 03:06:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.29953 * 125.30466 * 2 1 4 4 O 1.41876 * 107.40974 * 180.02562 * 3 2 1 5 5 N 1.41878 * 106.39024 * 359.77916 * 4 3 2 6 6 C 1.29951 * 107.41315 * 0.36926 * 5 4 3 7 7 C 1.50695 * 125.30359 * 179.89074 * 6 5 4 8 8 C 1.50704 * 109.47229 * 269.69466 * 7 6 5 9 9 O 1.21283 * 119.99598 * 0.02562 * 8 7 6 10 10 N 1.34778 * 119.99894 * 180.02562 * 8 7 6 11 11 C 1.46505 * 119.99661 * 179.97438 * 10 8 7 12 12 C 1.52994 * 109.46671 * 179.97438 * 11 10 8 13 13 H 1.08994 * 112.85600 * 43.80495 * 12 11 10 14 14 C 1.53790 * 113.61253 * 175.00078 * 12 11 10 15 15 C 1.53782 * 87.08176 * 139.98108 * 14 12 11 16 16 H 1.08997 * 113.61369 * 89.19654 * 15 14 12 17 17 N 1.46498 * 113.61388 * 220.02130 * 15 14 12 18 18 C 1.36943 * 119.99727 * 205.00107 * 17 15 14 19 19 H 1.07998 * 120.00392 * 359.97438 * 18 17 15 20 20 C 1.38811 * 119.99586 * 179.97438 * 18 17 15 21 21 N 1.31618 * 120.00460 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 119.99694 * 179.97438 * 20 18 17 23 23 H 1.48506 * 109.47297 * 179.97438 * 22 20 18 24 24 H 1.48503 * 109.47261 * 60.00129 * 22 20 18 25 25 H 1.48500 * 109.47454 * 300.00122 * 22 20 18 26 26 C 1.53785 * 113.61678 * 272.49712 * 12 11 10 27 27 H 1.08998 * 109.47240 * 270.00510 * 1 2 3 28 28 H 1.09001 * 109.46846 * 29.99829 * 1 2 3 29 29 H 1.08991 * 109.47442 * 149.99803 * 1 2 3 30 30 H 1.09000 * 109.47160 * 149.69719 * 7 6 5 31 31 H 1.08999 * 109.47239 * 29.69599 * 7 6 5 32 32 H 0.96990 * 119.99999 * 359.97438 * 10 8 7 33 33 H 1.09000 * 109.46957 * 60.00074 * 11 10 8 34 34 H 1.08999 * 109.47238 * 300.00079 * 11 10 8 35 35 H 1.08999 * 113.61219 * 25.43142 * 14 12 11 36 36 H 1.08996 * 113.68978 * 254.53746 * 14 12 11 37 37 H 0.96998 * 120.00095 * 24.99566 * 17 15 14 38 38 H 0.97001 * 119.99952 * 359.97438 * 21 20 18 39 39 H 1.09001 * 113.61484 * 105.47478 * 26 12 11 40 40 H 1.08998 * 113.61333 * 334.57032 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2581 1.0605 0.0000 4 8 3.6082 0.6246 -0.0006 5 7 3.5709 -0.7937 0.0043 6 6 2.3212 -1.1499 -0.0006 7 6 1.8208 -2.5714 -0.0003 8 6 1.6530 -3.0452 -1.4210 9 8 1.9146 -2.3019 -2.3430 10 7 1.2124 -4.2949 -1.6670 11 6 1.0488 -4.7553 -3.0482 12 6 0.5408 -6.1985 -3.0478 13 1 -0.2547 -6.3671 -2.3221 14 6 0.2190 -6.7386 -4.4513 15 6 0.8448 -8.0680 -3.9974 16 1 0.1326 -8.7494 -3.5321 17 7 1.6609 -8.7145 -5.0279 18 6 1.8540 -10.0699 -4.9980 19 1 1.4050 -10.6622 -4.2145 20 6 2.6269 -10.6825 -5.9748 21 7 3.1746 -9.9607 -6.9294 22 14 2.8909 -12.5313 -5.9336 23 1 3.7463 -12.9349 -7.0785 24 1 1.5792 -13.2209 -6.0292 25 1 3.5566 -12.9081 -4.6607 26 6 1.6642 -7.2470 -2.9877 27 1 -0.3633 0.0001 1.0276 28 1 -0.3633 0.8900 -0.5138 29 1 -0.3634 -0.8899 -0.5138 30 1 0.8610 -2.6186 0.5142 31 1 2.5399 -3.2096 0.5131 32 1 1.0036 -4.8894 -0.9296 33 1 2.0085 -4.7084 -3.5628 34 1 0.3297 -4.1167 -3.5612 35 1 0.7749 -6.2437 -5.2476 36 1 -0.8486 -6.8074 -4.6598 37 1 2.0645 -8.1825 -5.7315 38 1 3.0379 -9.0006 -6.9506 39 1 1.7630 -7.7258 -2.0135 40 1 2.6152 -6.8911 -3.3840 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001488782368.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:06:12 Heat of formation + Delta-G solvation = 50.742659 kcal Electronic energy + Delta-G solvation = -22487.570924 eV Core-core repulsion = 18920.337597 eV Total energy + Delta-G solvation = -3567.233327 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.148 amu Computer time = 1.81 seconds Orbital eigenvalues (eV) -42.64722 -40.92438 -39.86530 -36.34193 -35.66295 -35.24140 -34.50201 -32.09951 -30.87701 -29.66908 -28.19737 -26.52080 -25.67717 -23.87374 -22.70376 -22.17798 -21.40323 -20.45850 -19.37056 -18.37325 -18.07094 -17.28158 -16.98428 -16.76511 -16.54348 -16.14811 -15.73499 -15.38819 -15.27067 -15.04438 -14.73949 -14.63099 -14.24265 -13.84230 -13.45824 -13.31838 -13.27820 -13.05243 -12.89992 -12.64247 -12.60819 -12.52376 -12.16666 -12.07614 -11.83419 -11.69103 -11.64967 -11.39268 -11.13855 -10.91734 -10.80052 -10.14184 -9.08441 -8.39056 -5.32707 -0.58375 0.85303 1.44913 1.49165 1.58486 1.68632 1.84628 1.98606 2.20265 2.72785 2.78556 3.38494 3.44510 3.62173 3.68297 3.74690 3.90301 3.91403 4.12968 4.14563 4.27675 4.36125 4.36945 4.49248 4.51887 4.64054 4.71428 4.75362 4.91351 4.91654 5.01510 5.09088 5.17156 5.30164 5.37938 5.60747 5.67884 5.79633 6.47972 6.48663 7.10170 7.16692 8.00524 8.13658 9.12701 Molecular weight = 294.15amu Principal moments of inertia in cm(-1) A = 0.036330 B = 0.002281 C = 0.002228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 770.530927 B =12272.923696 C =12566.719909 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C 0.099 3.901 3 N -0.311 5.311 4 O -0.021 6.021 5 N -0.297 5.297 6 C 0.104 3.896 7 C -0.074 4.074 8 C 0.515 3.485 9 O -0.590 6.590 10 N -0.702 5.702 11 C 0.138 3.862 12 C -0.089 4.089 13 H 0.132 0.868 14 C -0.140 4.140 15 C 0.144 3.856 16 H 0.080 0.920 17 N -0.744 5.744 18 C -0.330 4.330 19 H 0.071 0.929 20 C -0.111 4.111 21 N -0.979 5.979 22 Si 1.128 2.872 23 H -0.297 1.297 24 H -0.275 1.275 25 H -0.277 1.277 26 C -0.155 4.155 27 H 0.134 0.866 28 H 0.092 0.908 29 H 0.113 0.887 30 H 0.189 0.811 31 H 0.150 0.850 32 H 0.424 0.576 33 H 0.039 0.961 34 H 0.071 0.929 35 H 0.062 0.938 36 H 0.080 0.920 37 H 0.357 0.643 38 H 0.242 0.758 39 H 0.071 0.929 40 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.888 15.259 21.076 29.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.084 4.084 3 N -0.060 5.060 4 O -0.154 6.154 5 N -0.043 5.043 6 C -0.081 4.081 7 C -0.114 4.114 8 C 0.301 3.699 9 O -0.470 6.470 10 N -0.355 5.355 11 C 0.014 3.986 12 C -0.108 4.108 13 H 0.150 0.850 14 C -0.179 4.179 15 C 0.035 3.965 16 H 0.098 0.902 17 N -0.384 5.384 18 C -0.462 4.462 19 H 0.089 0.911 20 C -0.302 4.302 21 N -0.628 5.628 22 Si 0.952 3.048 23 H -0.223 1.223 24 H -0.201 1.201 25 H -0.203 1.203 26 C -0.195 4.195 27 H 0.152 0.848 28 H 0.110 0.890 29 H 0.131 0.869 30 H 0.206 0.794 31 H 0.168 0.832 32 H 0.262 0.738 33 H 0.057 0.943 34 H 0.089 0.911 35 H 0.081 0.919 36 H 0.099 0.901 37 H 0.189 0.811 38 H 0.053 0.947 39 H 0.090 0.910 40 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -10.842 15.193 19.840 27.240 hybrid contribution -0.441 1.048 0.137 1.145 sum -11.283 16.241 19.978 28.110 Atomic orbital electron populations 1.20920 0.80468 1.06608 1.07147 1.25352 1.02288 0.87805 0.92972 1.79881 0.88645 1.21095 1.16383 1.93363 1.21843 1.14029 1.86128 1.79874 1.19559 0.91157 1.13684 1.24469 0.89284 0.99637 0.94696 1.20643 1.08736 0.86875 0.95125 1.20627 0.76320 0.81978 0.90998 1.90797 1.51845 1.56302 1.48065 1.45736 1.66502 1.13720 1.09507 1.21211 1.00031 0.94476 0.82908 1.22463 0.98823 0.91271 0.98203 0.84997 1.23351 1.01316 0.96585 0.96688 1.21957 0.92772 0.91856 0.89921 0.90161 1.42685 1.59884 1.04826 1.30960 1.20481 1.28787 0.85737 1.11177 0.91056 1.27243 0.97924 1.10628 0.94369 1.71001 1.49203 1.06494 1.36088 0.82631 0.76602 0.69678 0.75850 1.22325 1.20096 1.20267 1.23722 0.97335 0.97989 1.00501 0.84823 0.88967 0.86861 0.79391 0.83212 0.73794 0.94274 0.91051 0.91938 0.90086 0.81109 0.94728 0.91012 0.93159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.44 10.05 71.24 0.72 0.28 16 2 C 0.10 1.60 7.19 43.49 0.31 1.91 16 3 N -0.31 -7.49 12.98 -47.15 -0.61 -8.10 16 4 O -0.02 -0.61 13.71 70.16 0.96 0.35 16 5 N -0.30 -7.70 12.98 -47.16 -0.61 -8.31 16 6 C 0.10 1.80 5.68 43.49 0.25 2.04 16 7 C -0.07 -0.54 5.87 29.10 0.17 -0.37 16 8 C 0.52 8.43 7.82 87.66 0.69 9.11 16 9 O -0.59 -16.83 16.03 -3.04 -0.05 -16.88 16 10 N -0.70 -9.00 5.56 -463.05 -2.57 -11.57 16 11 C 0.14 2.74 5.51 86.38 0.48 3.22 16 12 C -0.09 -1.75 3.75 -10.26 -0.04 -1.79 16 13 H 0.13 1.67 8.14 -2.39 -0.02 1.65 16 14 C -0.14 -3.87 7.39 31.12 0.23 -3.64 16 15 C 0.14 5.16 4.48 45.52 0.20 5.36 16 16 H 0.08 2.80 8.10 -2.39 -0.02 2.79 16 17 N -0.74 -36.73 5.40 -320.44 -1.73 -38.46 16 18 C -0.33 -18.24 9.97 84.03 0.84 -17.40 16 19 H 0.07 3.77 7.83 -2.91 -0.02 3.74 16 20 C -0.11 -6.44 5.50 84.86 0.47 -5.98 16 21 N -0.98 -62.03 13.70 21.65 0.30 -61.73 16 22 Si 1.13 51.46 29.92 68.60 2.05 53.51 16 23 H -0.30 -14.04 7.11 99.48 0.71 -13.33 16 24 H -0.28 -11.52 7.11 99.48 0.71 -10.81 16 25 H -0.28 -11.65 7.11 99.48 0.71 -10.94 16 26 C -0.15 -4.45 7.43 31.12 0.23 -4.22 16 27 H 0.13 -0.25 8.14 -2.39 -0.02 -0.27 16 28 H 0.09 0.51 8.14 -2.39 -0.02 0.49 16 29 H 0.11 0.13 7.77 -2.39 -0.02 0.11 16 30 H 0.19 -0.84 7.78 -2.39 -0.02 -0.86 16 31 H 0.15 0.55 8.14 -2.39 -0.02 0.53 16 32 H 0.42 2.06 8.47 -92.72 -0.79 1.27 16 33 H 0.04 1.06 7.84 -2.39 -0.02 1.04 16 34 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 35 H 0.06 1.95 8.08 -2.39 -0.02 1.93 16 36 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 37 H 0.36 18.84 6.76 -92.71 -0.63 18.22 16 38 H 0.24 15.34 6.77 -92.71 -0.63 14.71 16 39 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 40 H 0.05 1.73 7.89 -2.39 -0.02 1.72 16 Total: -1.00 -87.59 346.53 2.08 -85.51 By element: Atomic # 1 Polarization: 17.36 SS G_CDS: -0.19 Total: 17.17 kcal Atomic # 6 Polarization: -16.01 SS G_CDS: 4.54 Total: -11.47 kcal Atomic # 7 Polarization: -122.95 SS G_CDS: -5.23 Total: -128.18 kcal Atomic # 8 Polarization: -17.45 SS G_CDS: 0.91 Total: -16.53 kcal Atomic # 14 Polarization: 51.46 SS G_CDS: 2.05 Total: 53.51 kcal Total: -87.59 2.08 -85.51 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001488782368.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.250 kcal (2) G-P(sol) polarization free energy of solvation -87.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.507 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.81 seconds