Wall clock time and date at job start Tue Mar 31 2020 04:34:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46503 * 109.47494 * 2 1 4 4 C 1.46490 * 120.00195 * 262.84957 * 3 2 1 5 5 C 1.52994 * 109.47631 * 269.99776 * 4 3 2 6 6 N 1.46490 * 109.47631 * 180.02562 * 5 4 3 7 7 C 1.36937 * 120.00317 * 180.02562 * 6 5 4 8 8 H 1.08004 * 119.99786 * 359.97438 * 7 6 5 9 9 C 1.38818 * 120.00334 * 180.02562 * 7 6 5 10 10 N 1.31615 * 120.00028 * 359.97438 * 9 7 6 11 11 Si 1.86797 * 119.99916 * 179.97438 * 9 7 6 12 12 H 1.48499 * 109.47261 * 359.97438 * 11 9 7 13 13 H 1.48500 * 109.47084 * 119.99685 * 11 9 7 14 14 H 1.48501 * 109.46814 * 239.99622 * 11 9 7 15 15 C 1.34779 * 119.99885 * 82.84229 * 3 2 1 16 16 O 1.21548 * 120.00212 * 183.20399 * 15 3 2 17 17 C 1.47892 * 120.00014 * 3.21329 * 15 3 2 18 18 C 1.41574 * 119.89398 * 173.28283 * 17 15 3 19 19 C 1.36326 * 118.23683 * 180.02562 * 18 17 15 20 20 C 1.41266 * 117.93140 * 0.25487 * 19 18 17 21 21 O 1.21986 * 120.22267 * 179.73056 * 20 19 18 22 22 N 1.34608 * 119.55430 * 359.48474 * 20 19 18 23 23 C 1.46503 * 119.10088 * 180.23584 * 22 20 19 24 24 N 1.28388 * 121.79419 * 0.53564 * 22 20 19 25 25 H 1.08999 * 109.47442 * 299.99732 * 1 2 3 26 26 H 1.08998 * 109.46976 * 59.99781 * 1 2 3 27 27 H 1.08997 * 109.47373 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47442 * 240.00267 * 2 1 3 29 29 H 1.09008 * 109.47480 * 119.99995 * 2 1 3 30 30 H 1.09008 * 109.47383 * 29.99934 * 4 3 2 31 31 H 1.09006 * 109.47351 * 149.99049 * 4 3 2 32 32 H 1.09008 * 109.46865 * 300.00475 * 5 4 3 33 33 H 1.09001 * 109.46884 * 59.99266 * 5 4 3 34 34 H 0.97004 * 120.00084 * 0.02562 * 6 5 4 35 35 H 0.96995 * 120.00034 * 180.02562 * 10 9 7 36 36 H 1.08002 * 120.87863 * 0.04443 * 18 17 15 37 37 H 1.08003 * 121.03404 * 179.97438 * 19 18 17 38 38 H 1.08997 * 109.46869 * 180.28720 * 23 22 20 39 39 H 1.08996 * 109.46987 * 300.28963 * 23 22 20 40 40 H 1.08996 * 109.46856 * 60.28992 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.4115 2.0192 -1.2588 5 6 3.8977 1.7642 -1.5175 6 7 4.2909 2.4027 -2.7760 7 6 5.5839 2.3083 -3.2169 8 1 6.3139 1.7634 -2.6366 9 6 5.9566 2.9137 -4.4092 10 7 5.0672 3.5781 -5.1161 11 14 7.7206 2.7855 -5.0102 12 1 8.5174 1.9914 -4.0408 13 1 7.7444 2.1172 -6.3361 14 1 8.3024 4.1464 -5.1313 15 6 2.1059 2.0650 1.1581 16 8 2.4555 3.2291 1.1517 17 6 1.7768 1.3989 2.4369 18 6 2.0047 2.0712 3.6618 19 6 1.6896 1.4254 4.8203 20 6 1.1587 0.1196 4.7267 21 8 0.8668 -0.4984 5.7371 22 7 0.9726 -0.4362 3.5149 23 6 0.4166 -1.7889 3.4292 24 7 1.2743 0.1847 2.4324 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5139 0.8900 30 1 1.8236 1.6022 -2.0766 31 1 2.2329 3.0925 -1.1935 32 1 4.4856 2.1811 -0.6997 33 1 4.0762 0.6909 -1.5828 34 1 3.6353 2.8923 -3.2970 35 1 5.3276 4.0009 -5.9493 36 1 2.4170 3.0693 3.6779 37 1 1.8452 1.8957 5.7800 38 1 0.3379 -2.0837 2.3828 39 1 1.0709 -2.4845 3.9546 40 1 -0.5727 -1.8047 3.8865 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001497497585.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:34:12 Heat of formation + Delta-G solvation = 11.407847 kcal Electronic energy + Delta-G solvation = -23680.222120 eV Core-core repulsion = 20111.283107 eV Total energy + Delta-G solvation = -3568.939012 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.148 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -43.32194 -41.06640 -38.93141 -37.68654 -36.39483 -35.97372 -33.74272 -32.61047 -31.55756 -29.81611 -28.90914 -26.55321 -25.58818 -24.74562 -24.33781 -23.36528 -21.30765 -19.69347 -19.13045 -18.69069 -18.05058 -17.87549 -17.25872 -17.04852 -16.68389 -16.26184 -15.59035 -15.42742 -15.23876 -15.11383 -14.76698 -14.50416 -14.43575 -14.28555 -13.79832 -13.55935 -13.49942 -13.07040 -12.94768 -12.85747 -12.76637 -12.52013 -12.31624 -12.07401 -11.87737 -11.82126 -11.50996 -11.38002 -10.97087 -10.75558 -9.82927 -9.67734 -9.04267 -7.96295 -5.26531 -0.71307 -0.05489 1.00591 1.48019 1.49575 1.59114 1.60930 1.77928 2.35822 2.56438 2.71446 3.36580 3.38405 3.53584 3.67980 4.03739 4.12019 4.21210 4.26340 4.32618 4.36271 4.49165 4.50301 4.52409 4.60039 4.68453 4.72638 4.78766 4.86727 4.93408 5.07459 5.10505 5.14761 5.45175 5.46111 5.54629 6.23587 6.25817 6.33911 6.73815 6.95489 7.32099 8.03979 8.28956 9.27219 Molecular weight = 294.15amu Principal moments of inertia in cm(-1) A = 0.027758 B = 0.003140 C = 0.003046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1008.464649 B = 8916.443975 C = 9189.128884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.092 3.908 3 N -0.584 5.584 4 C 0.122 3.878 5 C 0.148 3.852 6 N -0.742 5.742 7 C -0.248 4.248 8 H 0.074 0.926 9 C -0.072 4.072 10 N -0.967 5.967 11 Si 0.975 3.025 12 H -0.267 1.267 13 H -0.289 1.289 14 H -0.293 1.293 15 C 0.578 3.422 16 O -0.561 6.561 17 C 0.008 3.992 18 C -0.028 4.028 19 C -0.188 4.188 20 C 0.471 3.529 21 O -0.558 6.558 22 N -0.336 5.336 23 C 0.070 3.930 24 N -0.153 5.153 25 H 0.046 0.954 26 H 0.049 0.951 27 H 0.094 0.906 28 H 0.088 0.912 29 H 0.111 0.889 30 H 0.099 0.901 31 H 0.068 0.932 32 H 0.004 0.996 33 H 0.031 0.969 34 H 0.376 0.624 35 H 0.253 0.747 36 H 0.171 0.829 37 H 0.189 0.811 38 H 0.129 0.871 39 H 0.095 0.905 40 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.878 -11.903 17.773 24.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.029 4.029 3 N -0.315 5.315 4 C -0.001 4.001 5 C 0.020 3.980 6 N -0.386 5.386 7 C -0.380 4.380 8 H 0.092 0.908 9 C -0.265 4.265 10 N -0.617 5.617 11 Si 0.804 3.196 12 H -0.191 1.191 13 H -0.216 1.216 14 H -0.221 1.221 15 C 0.364 3.636 16 O -0.438 6.438 17 C -0.161 4.161 18 C -0.051 4.051 19 C -0.217 4.217 20 C 0.271 3.729 21 O -0.439 6.439 22 N -0.158 5.158 23 C -0.069 4.069 24 N 0.015 4.985 25 H 0.065 0.935 26 H 0.068 0.932 27 H 0.112 0.888 28 H 0.107 0.893 29 H 0.129 0.871 30 H 0.118 0.882 31 H 0.087 0.913 32 H 0.022 0.978 33 H 0.049 0.951 34 H 0.209 0.791 35 H 0.062 0.938 36 H 0.189 0.811 37 H 0.206 0.794 38 H 0.147 0.853 39 H 0.114 0.886 40 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -12.974 -12.445 17.827 25.318 hybrid contribution 0.980 1.041 -0.142 1.437 sum -11.994 -11.404 17.685 24.221 Atomic orbital electron populations 1.22047 0.94187 1.03597 1.01182 1.22336 0.95850 0.79938 1.04805 1.47896 1.62304 1.15686 1.05648 1.21456 0.94718 0.98798 0.85171 1.20968 0.93852 0.95736 0.87439 1.42385 1.09038 1.64069 1.23110 1.19616 0.87945 1.27163 1.03241 0.90849 1.25587 1.01995 1.00753 0.98152 1.69812 1.34831 1.40679 1.16408 0.85050 0.79645 0.77014 0.77885 1.19145 1.21560 1.22053 1.17629 0.77658 0.85354 0.82925 1.90838 1.49273 1.17210 1.86497 1.21525 1.07151 0.91972 0.95451 1.22279 0.91585 1.01626 0.89606 1.22860 1.03513 0.93680 1.01655 1.18383 0.81501 0.89408 0.83608 1.90966 1.53620 1.65015 1.34271 1.47262 1.48233 1.17584 1.02700 1.22607 1.00608 0.76266 1.07396 1.71834 1.05700 1.07915 1.13051 0.93470 0.93212 0.88774 0.89341 0.87134 0.88237 0.91301 0.97805 0.95114 0.79137 0.93817 0.81125 0.79396 0.85279 0.88633 0.88409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.15 9.59 71.98 0.69 -1.46 16 2 C 0.09 1.65 5.70 86.38 0.49 2.15 16 3 N -0.58 -15.33 2.49 -825.18 -2.06 -17.38 16 4 C 0.12 3.95 5.51 86.38 0.48 4.43 16 5 C 0.15 6.03 6.58 86.38 0.57 6.60 16 6 N -0.74 -38.31 5.60 -343.46 -1.92 -40.23 16 7 C -0.25 -14.05 9.99 84.03 0.84 -13.22 16 8 H 0.07 4.03 7.83 -2.91 -0.02 4.01 16 9 C -0.07 -4.18 5.50 84.86 0.47 -3.71 16 10 N -0.97 -59.15 13.06 21.65 0.28 -58.87 16 11 Si 0.98 46.21 29.55 68.60 2.03 48.24 16 12 H -0.27 -11.92 7.11 99.48 0.71 -11.22 16 13 H -0.29 -13.47 7.11 99.48 0.71 -12.76 16 14 H -0.29 -13.93 7.11 99.48 0.71 -13.22 16 15 C 0.58 16.38 7.59 86.80 0.66 17.04 16 16 O -0.56 -20.24 15.96 -3.87 -0.06 -20.30 16 17 C 0.01 0.17 6.61 42.59 0.28 0.45 16 18 C -0.03 -0.51 9.67 22.65 0.22 -0.29 16 19 C -0.19 -3.19 10.11 22.57 0.23 -2.96 16 20 C 0.47 9.53 7.47 85.01 0.64 10.17 16 21 O -0.56 -14.35 17.07 -5.27 -0.09 -14.44 16 22 N -0.34 -5.42 3.62 -494.06 -1.79 -7.20 16 23 C 0.07 0.60 10.21 127.77 1.30 1.90 16 24 N -0.15 -2.63 4.88 -48.19 -0.24 -2.87 16 25 H 0.05 0.75 6.77 -2.39 -0.02 0.73 16 26 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 27 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 28 H 0.09 1.51 8.02 -2.39 -0.02 1.49 16 29 H 0.11 1.77 5.25 -3.16 -0.02 1.75 16 30 H 0.10 2.88 8.07 -2.38 -0.02 2.86 16 31 H 0.07 2.54 7.38 -2.38 -0.02 2.52 16 32 H 0.00 0.18 8.14 -2.38 -0.02 0.16 16 33 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 34 H 0.38 20.32 7.67 -92.71 -0.71 19.61 16 35 H 0.25 14.90 8.31 -92.71 -0.77 14.13 16 36 H 0.17 2.90 7.73 -2.91 -0.02 2.88 16 37 H 0.19 2.32 8.06 -2.91 -0.02 2.30 16 38 H 0.13 0.43 8.05 -2.39 -0.02 0.41 16 39 H 0.10 0.77 8.14 -2.39 -0.02 0.75 16 40 H 0.10 0.74 8.14 -2.39 -0.02 0.72 16 Total: -1.00 -75.49 340.09 3.36 -72.13 By element: Atomic # 1 Polarization: 19.49 SS G_CDS: 0.35 Total: 19.84 kcal Atomic # 6 Polarization: 14.23 SS G_CDS: 6.86 Total: 21.09 kcal Atomic # 7 Polarization: -120.84 SS G_CDS: -5.72 Total: -126.56 kcal Atomic # 8 Polarization: -34.59 SS G_CDS: -0.15 Total: -34.74 kcal Atomic # 14 Polarization: 46.21 SS G_CDS: 2.03 Total: 48.24 kcal Total: -75.49 3.36 -72.13 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001497497585.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.537 kcal (2) G-P(sol) polarization free energy of solvation -75.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.130 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds