Wall clock time and date at job start Tue Mar 31 2020 04:48:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.34946 * 126.54245 * 2 1 4 4 O 1.35207 * 125.49269 * 359.96627 * 3 2 1 5 5 N 1.31537 * 109.01608 * 180.23531 * 3 2 1 6 6 C 1.33229 * 109.75717 * 359.76726 * 5 3 2 7 7 C 1.36720 * 107.96377 * 359.97438 * 6 5 3 8 8 C 1.46374 * 126.82558 * 179.97438 * 7 6 5 9 9 O 1.21732 * 120.00376 * 186.71216 * 8 7 6 10 10 N 1.34775 * 119.99832 * 6.99359 * 8 7 6 11 11 C 1.47422 * 125.65023 * 5.08978 * 10 8 7 12 12 C 1.54917 * 104.83528 * 155.83749 * 11 10 8 13 13 C 1.55150 * 101.57942 * 37.00700 * 12 11 10 14 14 C 1.47026 * 125.64910 * 184.78308 * 10 8 7 15 15 H 1.08997 * 109.88211 * 300.51276 * 14 10 8 16 16 C 1.53007 * 109.88287 * 61.67686 * 14 10 8 17 17 N 1.46498 * 109.46947 * 288.69159 * 16 14 10 18 18 C 1.36938 * 119.99999 * 171.93480 * 17 16 14 19 19 H 1.07994 * 119.99558 * 353.80165 * 18 17 16 20 20 C 1.38809 * 119.99973 * 173.81207 * 18 17 16 21 21 N 1.31618 * 119.99697 * 179.67107 * 20 18 17 22 22 Si 1.86800 * 120.00243 * 359.66069 * 20 18 17 23 23 H 1.48508 * 109.46832 * 92.99937 * 22 20 18 24 24 H 1.48500 * 109.47399 * 212.99803 * 22 20 18 25 25 H 1.48495 * 109.47006 * 333.00285 * 22 20 18 26 26 H 1.09003 * 109.46735 * 265.78625 * 1 2 3 27 27 H 1.08998 * 109.47350 * 25.77986 * 1 2 3 28 28 H 1.08993 * 109.46940 * 145.78700 * 1 2 3 29 29 H 0.96699 * 114.00248 * 270.28559 * 4 3 2 30 30 H 1.07993 * 126.01447 * 180.02562 * 6 5 3 31 31 H 1.09002 * 110.36800 * 274.67723 * 11 10 8 32 32 H 1.08999 * 110.36517 * 36.99738 * 11 10 8 33 33 H 1.08997 * 111.00417 * 155.08133 * 12 11 10 34 34 H 1.09002 * 110.99807 * 278.93523 * 12 11 10 35 35 H 1.09002 * 110.71967 * 82.86218 * 13 12 11 36 36 H 1.09003 * 110.72021 * 205.95881 * 13 12 11 37 37 H 1.08996 * 109.46620 * 48.68687 * 16 14 10 38 38 H 1.08996 * 109.46834 * 168.68729 * 16 14 10 39 39 H 0.97006 * 120.00317 * 351.93114 * 17 16 14 40 40 H 0.97006 * 120.00171 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2686 1.0842 0.0000 4 8 1.8515 2.3703 -0.0006 5 7 3.5229 0.6881 -0.0051 6 6 3.5747 -0.6432 -0.0034 7 6 2.2916 -1.1152 0.0036 8 6 1.8727 -2.5177 0.0072 9 8 0.6947 -2.8014 -0.1097 10 7 2.7906 -3.4948 0.1456 11 6 4.2274 -3.2931 0.4068 12 6 4.6966 -4.6074 1.0794 13 6 3.8630 -5.6659 0.3100 14 6 2.5238 -4.9385 0.0675 15 1 1.8011 -5.2238 0.8319 16 6 1.9856 -5.2939 -1.3200 17 7 0.6212 -4.7793 -1.4610 18 6 -0.0078 -4.8307 -2.6763 19 1 0.5343 -5.1571 -3.5515 20 6 -1.3421 -4.4632 -2.7834 21 7 -1.9448 -4.5065 -3.9526 22 14 -2.2823 -3.9074 -1.2679 23 1 -2.2076 -2.4286 -1.1538 24 1 -3.7028 -4.3236 -1.3864 25 1 -1.6838 -4.5280 -0.0589 26 1 -0.3633 -0.0755 1.0249 27 1 -0.3634 0.9254 -0.4469 28 1 -0.3633 -0.8498 -0.5778 29 1 1.7264 2.7428 -0.8842 30 1 4.4723 -1.2437 -0.0063 31 1 4.7642 -3.1330 -0.5283 32 1 4.3758 -2.4486 1.0797 33 1 5.7643 -4.7648 0.9269 34 1 4.4501 -4.6124 2.1412 35 1 4.3429 -5.9228 -0.6343 36 1 3.7134 -6.5568 0.9200 37 1 2.6232 -4.8465 -2.0825 38 1 1.9797 -6.3771 -1.4409 39 1 0.1633 -4.4021 -0.6935 40 1 -2.8773 -4.2500 -4.0275 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001666447178.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:48:22 Heat of formation + Delta-G solvation = 42.025098 kcal Electronic energy + Delta-G solvation = -24969.222801 eV Core-core repulsion = 21401.611452 eV Total energy + Delta-G solvation = -3567.611349 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 294.148 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.29712 -39.90872 -37.58628 -37.14075 -34.51713 -34.11834 -31.99618 -31.40959 -29.56878 -28.71237 -27.09478 -25.38657 -23.93463 -22.33769 -21.93320 -21.19355 -20.69273 -19.08232 -18.60954 -17.72769 -16.95417 -16.59917 -16.48848 -15.55540 -15.21393 -14.58619 -14.42396 -14.18747 -13.95201 -13.68658 -13.34052 -13.03570 -12.82270 -12.70255 -12.60231 -12.40565 -12.33092 -12.09308 -11.70417 -11.57222 -11.13132 -10.80082 -10.66813 -10.43023 -10.31057 -10.01810 -9.83520 -9.63912 -9.24229 -8.72594 -8.54821 -8.37998 -6.97411 -5.61527 -2.92661 1.22711 2.12380 2.60063 3.14555 3.45904 3.53999 3.57909 3.67650 3.71111 4.36525 4.46093 4.73784 4.78846 4.79502 4.84916 4.93485 5.19486 5.21244 5.24231 5.33442 5.42988 5.62445 5.65164 5.66840 5.75511 5.86547 5.87048 5.97476 6.08710 6.20109 6.25463 6.28805 6.42693 6.68117 6.80354 7.37928 7.62835 7.70610 8.14714 8.42041 8.60714 9.49323 10.20716 10.44957 11.57210 Molecular weight = 294.15amu Principal moments of inertia in cm(-1) A = 0.011777 B = 0.007696 C = 0.005072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2377.030912 B = 3637.484854 C = 5518.729002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.063 3.937 2 N -0.423 5.423 3 C 0.388 3.612 4 O -0.441 6.441 5 N -0.489 5.489 6 C 0.032 3.968 7 C -0.058 4.058 8 C 0.607 3.393 9 O -0.504 6.504 10 N -0.601 5.601 11 C 0.086 3.914 12 C -0.132 4.132 13 C -0.124 4.124 14 C 0.130 3.870 15 H 0.076 0.924 16 C 0.148 3.852 17 N -0.751 5.751 18 C -0.232 4.232 19 H 0.081 0.919 20 C 0.001 3.999 21 N -0.943 5.943 22 Si 0.900 3.100 23 H -0.288 1.288 24 H -0.303 1.303 25 H -0.277 1.277 26 H 0.081 0.919 27 H 0.087 0.913 28 H 0.113 0.887 29 H 0.403 0.597 30 H 0.193 0.807 31 H 0.075 0.925 32 H 0.084 0.916 33 H 0.085 0.915 34 H 0.075 0.925 35 H 0.082 0.918 36 H 0.083 0.917 37 H 0.029 0.971 38 H 0.028 0.972 39 H 0.382 0.618 40 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.085 6.782 11.594 19.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 N -0.115 5.115 3 C 0.088 3.912 4 O -0.242 6.242 5 N -0.218 5.218 6 C -0.121 4.121 7 C -0.175 4.175 8 C 0.395 3.605 9 O -0.379 6.379 10 N -0.336 5.336 11 C -0.037 4.037 12 C -0.170 4.170 13 C -0.162 4.162 14 C 0.027 3.973 15 H 0.094 0.906 16 C 0.019 3.981 17 N -0.406 5.406 18 C -0.362 4.362 19 H 0.099 0.901 20 C -0.194 4.194 21 N -0.592 5.592 22 Si 0.732 3.268 23 H -0.215 1.215 24 H -0.231 1.231 25 H -0.203 1.203 26 H 0.099 0.901 27 H 0.105 0.895 28 H 0.132 0.868 29 H 0.261 0.739 30 H 0.210 0.790 31 H 0.093 0.907 32 H 0.102 0.898 33 H 0.103 0.897 34 H 0.094 0.906 35 H 0.101 0.899 36 H 0.101 0.899 37 H 0.047 0.953 38 H 0.046 0.954 39 H 0.224 0.776 40 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 13.746 7.276 11.926 19.598 hybrid contribution -1.584 0.221 0.302 1.627 sum 12.162 7.496 12.227 18.805 Atomic orbital electron populations 1.22363 0.74837 1.05913 1.04732 1.45632 1.08596 1.05562 1.51728 1.20207 0.84565 0.81320 1.05068 1.84799 1.87065 1.18072 1.34276 1.70288 1.16451 1.12873 1.22192 1.23073 0.95986 0.90158 1.02932 1.20567 0.90935 0.88349 1.17643 1.16088 0.84955 0.82143 0.77333 1.90633 1.16550 1.82109 1.48586 1.47985 1.07879 1.06001 1.71765 1.22737 0.81733 0.98958 1.00254 1.22785 1.00277 0.94047 0.99914 1.22640 0.94304 0.97926 1.01360 1.21992 0.97023 0.78535 0.99714 0.90606 1.21013 0.88194 0.96718 0.92176 1.43362 1.12321 1.73976 1.10915 1.19045 0.93489 1.36933 0.86773 0.90088 1.24615 0.96521 1.01969 0.96300 1.69742 1.11451 1.55496 1.22502 0.86265 0.78016 0.78544 0.83935 1.21530 1.23088 1.20299 0.90086 0.89472 0.86835 0.73945 0.79025 0.90703 0.89808 0.89660 0.90601 0.89924 0.89884 0.95261 0.95423 0.77574 0.93509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.91 10.61 59.85 0.64 1.54 16 2 N -0.42 -6.51 3.20 -122.12 -0.39 -6.90 16 3 C 0.39 5.54 9.01 -89.59 -0.81 4.73 16 4 O -0.44 -4.91 13.46 -17.32 -0.23 -5.15 16 5 N -0.49 -7.32 11.22 -14.62 -0.16 -7.48 16 6 C 0.03 0.45 10.18 -17.49 -0.18 0.27 16 7 C -0.06 -0.93 6.85 -81.98 -0.56 -1.49 16 8 C 0.61 10.97 7.50 -12.99 -0.10 10.87 16 9 O -0.50 -11.13 10.28 5.16 0.05 -11.08 16 10 N -0.60 -8.99 3.07 -164.65 -0.50 -9.49 16 11 C 0.09 0.85 5.12 -2.53 -0.01 0.84 16 12 C -0.13 -1.05 7.08 -24.58 -0.17 -1.22 16 13 C -0.12 -1.25 6.46 -24.90 -0.16 -1.41 16 14 C 0.13 1.99 3.08 -66.95 -0.21 1.78 16 15 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 16 C 0.15 2.95 5.64 -4.04 -0.02 2.92 16 17 N -0.75 -19.27 4.18 -59.91 -0.25 -19.52 16 18 C -0.23 -7.00 10.47 -15.06 -0.16 -7.16 16 19 H 0.08 2.59 8.06 -52.49 -0.42 2.17 16 20 C 0.00 0.02 5.50 -17.43 -0.10 -0.08 16 21 N -0.94 -31.07 13.97 55.49 0.78 -30.30 16 22 Si 0.90 24.65 26.86 -169.99 -4.57 20.08 16 23 H -0.29 -7.66 7.11 56.52 0.40 -7.26 16 24 H -0.30 -8.32 7.11 56.52 0.40 -7.91 16 25 H -0.28 -7.45 6.50 56.52 0.37 -7.08 16 26 H 0.08 1.07 8.14 -51.93 -0.42 0.64 16 27 H 0.09 0.97 8.05 -51.93 -0.42 0.55 16 28 H 0.11 2.06 6.63 -51.93 -0.34 1.71 16 29 H 0.40 2.44 9.06 45.56 0.41 2.86 16 30 H 0.19 2.01 4.78 -52.49 -0.25 1.76 16 31 H 0.07 0.67 7.77 -51.93 -0.40 0.27 16 32 H 0.08 0.73 5.89 -51.93 -0.31 0.43 16 33 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 34 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 35 H 0.08 0.80 7.86 -51.93 -0.41 0.39 16 36 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 37 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 38 H 0.03 0.55 8.13 -51.93 -0.42 0.13 16 39 H 0.38 9.93 2.64 -40.97 -0.11 9.82 16 40 H 0.26 8.02 8.31 -40.82 -0.34 7.68 16 LS Contribution 320.49 15.07 4.83 4.83 Total: -1.00 -39.04 320.49 -6.67 -45.71 By element: Atomic # 1 Polarization: 12.06 SS G_CDS: -4.38 Total: 7.69 kcal Atomic # 6 Polarization: 13.44 SS G_CDS: -1.84 Total: 11.60 kcal Atomic # 7 Polarization: -73.15 SS G_CDS: -0.54 Total: -73.69 kcal Atomic # 8 Polarization: -16.04 SS G_CDS: -0.18 Total: -16.22 kcal Atomic # 14 Polarization: 24.65 SS G_CDS: -4.57 Total: 20.08 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -39.04 -6.67 -45.71 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001666447178.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.736 kcal (2) G-P(sol) polarization free energy of solvation -39.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.711 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds